Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP735A1 (At5g38450) save all data as Tab Delimited Table










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Pathways co-expressed in the 3 data sets with co-expressed genes (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.







Pathway Source Sum of scores Sum of genes







Cell Wall Carbohydrate Metabolism BioPath 370 113




































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.







































For more information on how these pathway maps were generated please read the methods page
























































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP735A1 (At5g38450)







max. difference between log2-ratios: 3.1











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Inositol phosphate metabolism KEGG 19 0.000 4 0.001


Benzoate degradation via CoA ligation KEGG 15 0.000 3 0.004

Nicotinate and nicotinamide metabolism KEGG 15 0.000 3 0.003

Leaf Glycerolipid Biosynthesis BioPath 9 0.000 1 0.114

Leaf Glycerolipid Biosynthesis in cytosol / ER BioPath 9 0.000 1 0.004

N-terminal protein myristoylation TAIR-GO 9 0.000 1 0.000

Synthesis of membrane lipids in endomembrane system AcylLipid 9 0.000 1 0.026










Cell Wall Carbohydrate Metabolism BioPath 8 0.008 3 0.019












































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP735A1 (At5g38450)







max. difference between log2-ratios: 2.8











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

















Link to stress heatmap






there are no co-expressed genes with more than 6 annotation points


































Pathways co-expressed in the Hormone etc. data set (with more than 13 annotation points)
CYP735A1 (At5g38450)







max. difference between log2-ratios: 0.7











max. difference between log2-ratios excluding lowest and highest 5%: 0.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Cell Wall Carbohydrate Metabolism BioPath 104.5 0.000 36 0.000





pectin metabolism BioPath 72.5 0.000 29 0.000




Phenylpropanoid Metabolism BioPath 46 0.000 8 0.300




mono-/sesqui-/di-terpene biosynthesis LitPath 30 0.000 6 0.001




terpenoid metabolism LitPath 30 0.000 6 0.002




Lipid signaling AcylLipid 25 0.044 7 0.268




biosynthesis of derivatives of homoisopentenyl pyrophosphate FunCat 24 0.000 3 0.002




Fatty acid elongation and wax and cutin metabolism AcylLipid 23 0.000 7 0.004




nucleotide metabolism FunCat 22 0.000 5 0.000




(deoxy)ribose phosphate degradation AraCyc 20 0.000 4 0.000




pyrimidine nucleotide metabolism FunCat 20 0.000 4 0.000




Nucleotide Metabolism KEGG 20 0.000 4 0.044




Pyrimidine metabolism KEGG 20 0.000 4 0.003










Flavonoid and anthocyanin metabolism BioPath 18 0.000 4 0.080










biogenesis of cell wall FunCat 18 0.001 6 0.010










Starch and sucrose metabolism KEGG 18 0.001 6 0.003










C-compound, carbohydrate catabolism FunCat 16 0.000 3 0.067










Glycolysis / Gluconeogenesis KEGG 16 0.003 4 0.047










Leaf Glycerolipid Biosynthesis in cytosol / ER BioPath 14 0.000 2 0.131










phospholipid biosynthesis II AraCyc 14 0.000 2 0.011










triacylglycerol biosynthesis AraCyc 14 0.000 2 0.000










plant / fungal specific systemic sensing and response FunCat 14 0.000 2 0.033










plant hormonal regulation FunCat 14 0.000 2 0.033










transport FunCat 14 0.000 4 0.000










transport facilitation FunCat 14 0.000 4 0.000





























































Pathways co-expressed in the Mutant data set (with more than 30 annotation points)
CYP735A1 (At5g38450)







max. difference between log2-ratios: 4.1











max. difference between log2-ratios excluding lowest and highest 5%: 0.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Cell Wall Carbohydrate Metabolism BioPath 257.5 0.000 74 0.000



C-compound and carbohydrate metabolism FunCat 145 0.000 37 0.025


pectin metabolism BioPath 104.5 0.000 46 0.000


Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 72 0.000 12 0.043


triterpene, sterol, and brassinosteroid metabolism LitPath 71 0.007 15 0.066


Nucleotide Metabolism KEGG 67 0.000 13 0.012


transport FunCat 64 0.000 16 0.000


mono-/sesqui-/di-terpene biosynthesis LitPath 62 0.000 11 0.002


terpenoid metabolism LitPath 62 0.000 11 0.003


cellulose biosynthesis BioPath 58 0.000 10 0.019


Purine metabolism KEGG 55 0.000 10 0.025


Pyruvate metabolism KEGG 53 0.000 9 0.145


Biosynthesis of prenyl diphosphates BioPath 50 0.000 8 0.089










transport facilitation FunCat 50 0.000 14 0.000










Starch and sucrose metabolism KEGG 49 0.002 12 0.024










Biosynthesis of steroids KEGG 47 0.000 8 0.027










Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 44 0.006 6 0.540










lactose degradation IV AraCyc 43 0.000 10 0.000










biogenesis of cell wall FunCat 40 0.000 14 0.002










Pyrimidine metabolism KEGG 40 0.000 9 0.003










Flavonoid and anthocyanin metabolism BioPath 39 0.000 11 0.035










Translation factors KEGG 39 0.002 14 0.015










trans-zeatin biosynthesis AraCyc 36 0.000 7 0.000










Citrate cycle (TCA cycle) KEGG 36 0.000 6 0.091










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 36 0.001 4 0.393










acetate fermentation AraCyc 34 0.031 9 0.149










cellulose biosynthesis AraCyc 34 0.000 6 0.155










TCA cycle -- aerobic respiration AraCyc 34 0.001 8 0.045










TCA cycle variation IV AraCyc 34 0.001 8 0.035










TCA cycle variation VIII AraCyc 34 0.003 8 0.056










nucleotide metabolism FunCat 34 0.000 7 0.000










brassinosteroid biosynthesis LitPath 33 0.021 4 0.255










fructose degradation (anaerobic) AraCyc 32 0.035 9 0.103










glycolysis IV AraCyc 32 0.039 9 0.111










triacylglycerol degradation AraCyc 32 0.000 15 0.000










energy FunCat 32 0.000 7 0.000










lipases pathway AraCyc 31 0.000 6 0.013



























page created by Juergen Ehlting 04/03/06