Co-Expression Analysis of: CYP73A5, C4H (At2g30490) Institut de Biologie Moléculaire des Plantes

















































































































CYPedia Home














































































































Hormones etc. Data Set save heatmap as: OpenOffice Table annotation details for co-expressed genes can be found to the right of the heatmap















































































































last updated: 31/01/06
MS Excel Table


















































































































magnitude of change    0   0.3   0.6   0.9  1.2   1.5   1.8   2.1   2.4   2.7   >2.99 















































































































greater than zero                                                         















































































































less than zero                                                         












































































































Locus r-value Name Description ethylene, 3h, petiole (13) mock, 30min, seedling (110) IAA, 30min, seedling (110) IAA, 1h, seedling (110) IAA, 3h, seedling (110) zeatin, 30min, seedling (110) zeatin, 1h, seedling (110) zeatin, 3h, seedling (110) GA3, 30min, seedling (110) GA3, 1h, seedling (110) GA3, 3h, seedling (110) ABA, 30min, seedling (110) ABA, 1h, seedling (110) ABA, 3h, seedling (110) MJ, 30min, seedling (110) MJ, 1h, seedling (110) MJ, 3h, seedling (110) ACC, 30min, seedling (110) ACC, 1h, seedling (110) ACC, 3h, seedling (110) BL, 30min, seedling (110) BL, 1h, seedling (110) BL, 3h, seedling (110) ABA, 3 uM, imbided seed (116) ABA, 30 uM, imbided seed (116) GA, 3h, imbibed seed (119) GA, 6h, imbibed seed (119) GA, 9h, imbibed seed (119) GA, 3h, imbibed seed (134) GA, 6h, imbibed seed (134) GA, 9h, imbibed seed (134) GA, 30min, whole plant (99) GA, 60min, whole plant (99) GA, 3h, whole plant (99) IAA, 0.1uM, 1h, seedling (144) IAA, 0.1uM, 3h, seedling (144) IAA, 1uM, 1h, seedling (144) IAA, 1uM, 3h, seedling (144) ppi, 3h, seedling (113) ppi, 12h, seedling (113) uni, 3h, seedling (113) uni, 12h, seedling (113) brz220, 3h, seedling (113) brz220, 12h, seedling (113) brz91, 3h, seedling (113) brz91, 12h, seedling (113) pac, 3h, seedling (113) pac, 12h, seedling (113) px, 3h, seedling (113) px, 12h, seedling (113) pno8, 3h, seedling (113) pno8, 12h, seedling (113) ibup, 3h, seedling (113) B9, 3h, seedling (113) AgNO3, 3h, seedling (113) AVG, 3h, seedling (113) Sal, 3h, seedling (113) MG132, 3h, seedling (113) 246T, 3h, seedling (113) PCIB, 3h, seedling (113) TIBA, 3h, seedling (113) NPA, 3h, seedling (113) CHX, 3h, seedling (113) Colm, 3h, seedling (113) ColPNO8, 3h, seedling (113) ColBrz, 3h, seedling (113) glucose, 8h, seedling (14) sucrose, 8h, seedling (15) deoxyglucose, 8h_seedling (14) methylglucose, 8h, seedling (14) K depleted, whole rosette (97) K depleted, root (97) Sulfate depleted, 2h, root (112) Sulfate depleted, 4h, root (112) Sulfate depleted, 8h, root (112) Sulfate depleted, 12h, root (112) Sulfate depleted, 24h, root (112) mannitol, 8h, seedling (14) CO2, 1000ppm, guard cell enriched (11) CO2, 1000ppm, mature leaf (11) CO2, high light, whole rosette (95) CO2, medium light, whole rosette (95) CO2, low light, whole rosette (95) CO2, 2h, juvenile leaf (151) CO2, 4h, juvenile leaf (151) CO2, 6h, juvenile leaf (151) CO2, 12h, juvenile leaf (151) CO2, 24h, juvenile leaf (151) CO2, 48h, juvenile leaf (151) dark, 45min, seedling (109) dark, 4h, seedling (109) far red, 45min, seedling (109) far red, 4h, seedling (109) red pulse1, seedling (109) red pulse2, seedling (109) red, 45min, seedling (109) red, 4h, seedling (109) blue, 45min, seedling (109) blue, 4h, seedling (109) UV-A pulse1, seedling (109) UV-A pulse2, seedling (109) UV-AB pulse1, seedling (109) UV-AB pulse2, seedling (109) UV-A, 18h, mature leaf (72) UV-B, 18h, mature leaf (72) Locus Probeset Name Description Annotation score GO.keywords FunCat keywords AraCyc annotations KEGG annotations BioPath annotations AcylLipid category Literature annotations Gene family 90% quantile of DE max. DE
At2g30490 1.000 C4H, CYP73A5 trans-cinnamate 4-monooxygenase / cinnamic acid 4-hydroxylase (C4H) (CA4H) / cytochrome P450 73 (CYP73A5) -0.2 0 0 0 -0.4 -0.1 0 0 0 0 -0.2 -0.2 0 0.3 -0.3 0 0 -0.2 -0.1 -0.2 -0.2 0 -0.2 -0.1 -0.2 0.1 0.1 0.2 0.1 0.1 0.2 -0.1 -0.1 0 0.1 0 0 -0.1 0.1 0.1 0.1 0.2 0.1 0 0 0 0.1 0 0 0 0.1 -0.1 0.1 0 0.6 0 0.5 -0.1 0 0 0 0 -1.7 -0.1 -0.2 -0.4 0 0.4 -0.1 0 0.6 0.4 -0.1 0.1 0 -0.1 0 -0.3 1 0 -0.4 -0.2 0.2 0 0 0 0.2 0 0 -0.1 -0.5 0 0.3 0 -0.3 0 -0.1 0 0.2 0 -0.2 0 0.2 0.2 0.9 At2g30490 267470_at C4H, CYP73A5 trans-cinnamate 4-monooxygenase / cinnamic acid 4-hydroxylase (C4H) (CA4H) / cytochrome P450 73 (CYP73A5) 10 trans-cinnamate 4-monooxygenase activity | response to light | response to wounding | phenylpropanoid biosynthesis
suberin biosynthesis | lignin biosynthesis | phenylpropanoid pathway, initial reactions Phenylalanine metabolism | Stilbene, coumarine and lignin biosynthesis Phenylpropanoid Metabolism | core phenylpropanoid metabolism
Phenylpropanoid pathway cytochrome P450 family, cinnamic acid 4-hydroxylase, phenylpropanoid metabolism 0.82 2.78
At2g40890 0.699 C3'H, CYP98A3 encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis. 0 0 -0.1 -0.2 -0.3 0 0 -0.2 -0.1 0.1 0 -0.2 -0.1 0.4 -0.3 0 0 0 0 0.2 -0.1 0 -0.1 0.1 0.1 0.1 0 0 0.1 0 0 -0.1 -0.1 -0.2 -0.1 -0.1 -0.1 -0.5 0 0 0.2 0.1 0.2 0 0.2 0.1 0.2 0.1 0 0 0.3 0 0.2 0.2 0.1 0.1 0.4 0 0.2 0 0.2 0.1 -2.1 -0.1 -0.1 -0.3 0.2 0.7 0 0.2 -0.1 0.1 0.1 0.1 0 0.1 0 0 0.1 0.1 0 -0.3 0 0.1 0 -0.2 0.1 0 0 0 -0.5 0 0.2 0 -0.3 0 0 0 0 0 -0.4 -0.1 -0.1 0.1 0.2 At2g40890 245101_at C3'H, CYP98A3 encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis. 10 p-coumarate 3-hydroxylase activity | monooxygenase activity | phenylpropanoid biosynthesis | lignin biosynthesis
suberin biosynthesis | lignin biosynthesis | phenylpropanoid biosynthesis Ascorbate and aldarate metabolism | Stilbene, coumarine and lignin biosynthesis | gamma-Hexachlorocyclohexane degradation | Fluorene degradation Phenylpropanoid Metabolism | core phenylpropanoid metabolism
Phenylpropanoid pathway cytochrome P450 family, 3’-hydroxylase for p-coumaryl shikimic/quinic acids, phenylpropanoid metabolism 0.63 2.83
At2g37040 0.655 PAL1 phenylalanine ammonia-lyase 1 0 0 0 -0.2 -0.4 -0.1 -0.3 0.4 0.1 -0.3 -0.1 0.1 -0.1 0.3 0 0.2 0.6 0 -0.2 0.2 0.1 0 0.1 0.4 0 0 -0.5 0 0 -0.5 0 -0.3 -0.2 -0.3 0.1 -0.1 0 -1 -0.1 0 0 0 0 0 0.1 0 0 0 0 0 0.2 0 0.1 0 0.6 0.1 0.5 0 0.2 0 0.1 0.1 -1 -0.5 -0.4 -0.7 0 0.4 -0.3 -0.4 0.2 0.8 -0.1 0 0.3 0 0 -0.4 0.6 -0.5 -0.1 -0.5 -0.1 0 -0.1 -0.1 0.2 0 -0.1 -0.1 -0.5 0 0.6 0 -0.2 0 0 0 0.1 0 0 -0.1 0.6 0.3 2.4 At2g37040 263845_at PAL1 phenylalanine ammonia-lyase 1 10 defense response | response to wounding | phenylpropanoid biosynthesis | phenylalanine ammonia-lyase activity amino acid metabolism | metabolism of the cysteine - aromatic group | biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine | biosynthesis of phenylpropanoids salicylic acid biosynthesis | suberin biosynthesis | lignin biosynthesis | phenylpropanoid pathway, initial reactions Nitrogen metabolism | Tyrosine metabolism | Phenylalanine metabolism | Alkaloid biosynthesis II Phenylpropanoid Metabolism | core phenylpropanoid metabolism
Phenylpropanoid pathway
1.15 3.56
At1g48850 0.651
Similar to chorismate synthase from Lycopersicon esculentum 0.3 0 0 0 0 -0.1 0.1 0.1 -0.1 0.1 0 -0.1 0 0 -0.2 0 0.2 -0.3 0 0 -0.2 0 -0.1 0 -0.1 0.1 0.2 0.1 0.1 0.2 0.1 0 -0.1 -0.1 0 0 0.1 -0.3 0.1 -0.2 0 0 0 0 0 -0.1 0 -0.1 -0.3 0 0 -0.2 -0.1 -0.1 0.4 0 0.1 0.2 0.1 -0.1 0.1 0 -1 -0.1 0 -0.2 0.2 0.8 0.1 -0.2 -0.1 0 0 0 -0.1 0 0 0 0.3 -0.2 0 -0.2 0 0 0 0 0 0.1 0 0 -0.1 0 0.2 0 0 0 -0.2 0 0.1 -0.1 0 0 0.1 0.1 1.4 At1g48850 245832_at
Similar to chorismate synthase from Lycopersicon esculentum 6 aromatic amino acid family biosynthesis, shikimate pathway
chorismate biosynthesis Phenylalanine, tyrosine and tryptophan biosynthesis Phenylpropanoid Metabolism | Aromatic amino acid (Phe, Tyr, Trp) metabolism
Shikimate pathway | chorismate biosynthesis
0.56 2.46
At2g31570 0.644 ATGPX2 glutathione peroxidase, putative 0.1 0 0 0 -0.1 0.1 0.1 0 0 0.2 -0.3 0 0 0.7 -0.1 -0.2 -0.2 -0.1 -0.1 -0.1 -0.3 -0.2 -0.3 -0.5 -0.5 0.3 0.6 1 0.3 0.6 1 -0.1 -0.1 -0.1 0 0 0 -0.5 0 0.3 0 0.2 0 0.1 0 0.1 0.1 0.4 0.1 0.2 -0.1 0.2 0.1 0 -0.1 0 0.2 0 -0.1 0 0 -0.1 -1.3 -0.1 -0.3 0 0 -0.2 0 0 0.9 0.1 0 0.1 -0.1 -0.2 -0.1 0 0.2 0.1 0.1 -0.2 -0.1 0.1 0 0 -0.1 -0.1 0 0 -0.4 0 -0.1 -0.1 -0.3 0 -0.2 0 -0.1 0 -0.3 0 -0.2 0.3 1 At2g31570 263426_at ATGPX2 glutathione peroxidase, putative 6


Glutathione metabolism Biosynthesis of Amino Acids and Derivatives | Glutathione metabolism


1.04 2.41
At5g54160 0.632 ATOMT1 A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. 0 0 0 0 0 0.1 0.1 0.1 0 0 0 0 0 0.3 0 0 0 0 0 0.1 0 0 0 -0.2 -0.8 -0.1 -0.2 -0.3 -0.1 -0.2 -0.3 0 -0.1 -0.2 0.2 0.2 0.1 -0.3 0.1 0 0.2 0.2 0.1 0 0.2 0 0.2 0.1 0.2 0 0 0.1 0.1 0.4 0.1 0.1 0 0.1 0.1 0.1 -0.1 0.2 -1.8 0 -0.5 -0.1 0.5 0.5 0.2 0.2 0.2 0.1 0 0.2 0 -0.2 0.1 0.2 1.1 -0.5 -0.2 -0.5 0 0.1 0.1 0 0 0.2 0.1 -0.1 -0.9 0 0 0 -0.4 0 0 0.1 0 0 -0.4 0 -0.4 0 0.1 At5g54160 248200_at ATOMT1 A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. 10 lignin biosynthesis | caffeate O-methyltransferase activity
suberin biosynthesis | lignin biosynthesis | phenylpropanoid biosynthesis Flavonoid biosynthesis Phenylpropanoid Metabolism | core phenylpropanoid metabolism
Phenylpropanoid pathway Methyltransferase, COMT like 0.77 2.97
At2g27510 0.612
similar to non-photosynthetic ferredoxin from Citrus sinensis, and to Ferredoxin, root R-B2 from Raphanus sativus 0.3 0 0 0 0 0 0 0 0 -0.1 0 0 0.1 -0.1 0 -0.1 -0.1 0 0 0.1 0 0 -0.2 0 0 0.4 0.2 0.1 0.4 0.2 0.1 -0.1 -0.3 0 0.2 0.3 0.2 -0.4 0.1 0 0.2 -0.1 0.2 0 0 -0.2 0 -0.2 -0.3 0 0 -0.2 -0.1 0 0.1 0 0.2 0 0.2 0 0 0 -1.9 -0.3 -0.1 -0.2 0 0.5 -0.1 -0.2 0.6 0 -0.1 0 -0.1 -0.3 0.1 -0.1 0.1 0 0.3 0 0.1 -0.1 0 0.1 0 -0.1 0 -0.1 0.1 -0.2 0 -0.2 0 0 0.1 0 0.1 -0.1 0 0 0.3 0 0.2 At2g27510 265649_at
similar to non-photosynthetic ferredoxin from Citrus sinensis, and to Ferredoxin, root R-B2 from Raphanus sativus 4


Photosynthesis Photosystems | Ferredoxin


0.64 2.63
At5g05270 0.602
contains very low similarity to chalcone-flavonone isomerase (chalcone isomerase), from Vitis vinifera 0.1 0.1 -0.2 -0.3 -0.7 -0.5 -0.2 0.2 -0.2 -0.2 -0.2 -0.2 0.2 0.8 -0.3 0 0 -0.3 0 -0.1 0 0 -0.1 -1.2 -0.5 0.8 1.1 1.3 0.8 1.1 1.3 0.3 -0.2 1 0.1 -0.5 -0.1 -1.3 0.6 -0.1 0.5 -0.5 0.5 0 0.7 -0.2 0.2 -0.6 0.2 -0.1 0.5 -0.3 0.9 0.4 -0.8 0.7 -0.2 0.8 0.8 0.6 0.2 0.5 -3.3 -0.1 0 -0.1 0 0.1 -0.4 -0.4 0.7 -0.7 0.3 -0.1 0.3 0.2 0.1 -1 0.1 0.1 -0.4 -0.1 0.1 0 0 0.4 0.8 0.1 -0.1 0.1 -2.6 0.1 1.4 0.1 -2.6 0.1 -2.6 0.1 0.3 0.1 -2.6 0.1 0.3 0.1 4 At5g05270 250794_at
contains very low similarity to chalcone-flavonone isomerase (chalcone isomerase), from Vitis vinifera 2

flavonoid biosynthesis
Phenylpropanoid Metabolism | Flavonoid and anthocyanin metabolism


2.42 7.40
At2g47470 0.601
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. 0 0 0 0.1 0 0 0 0 0 0 0 0.1 0.1 0.1 0 0 0 -0.1 0 -0.1 0 0 0 -0.1 0 0 0 -0.2 0 0 -0.2 -0.1 -0.5 0.1 0 0 0 -0.4 0.1 0.1 0.1 0.1 0.2 0 0 0 0 0 0 0.2 -0.1 0 0.2 0 -0.1 0 0.3 0.1 0.1 -0.2 0 -0.1 -2 -0.2 -0.6 -0.2 0.1 0.5 0.3 0.1 0.1 -0.3 0 0 0 -0.1 0.1 0.1 0.4 0.3 0.5 0.1 0.1 0.1 0.1 0.1 0 0 0 0 0.1 -0.1 0 -0.2 0 0 -0.1 0 0.1 -0.1 0 0 0 0.4 0.9 At2g47470 245175_at
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. 2


Folding, Sorting and Degradation | Protein folding and associated processing



0.67 2.98
At3g18280 0.601
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to TED4 (Zinnia elegans) 0.2 0 0 -0.2 -0.8 0 -0.1 -0.6 0 0 0 0 -0.2 0 0 0 0.1 0.1 0 0 -0.1 0 -0.1 0 -0.8 0.2 0 0.3 0.2 0 0.3 -0.1 -0.4 -0.5 0 0 -0.1 -0.7 0.1 0.2 0.3 0.2 0.2 0.3 0 0 0.3 0 0 -0.1 0.2 0.1 0.4 0.1 0.2 0 0.2 0.1 0.4 0.4 -0.4 0.1 -2.7 0.4 0.2 0.2 0.3 1.5 -0.2 0 0.6 0.2 0 -0.1 -0.1 -0.3 0 -0.4 0.7 0.3 0 0.1 -0.8 0.1 0 0 0 0 0.1 -0.1 0.1 -0.1 0 0 0.1 0 0 0 0.1 0 0 -0.2 -0.4 0.1 0 At3g18280 257066_at
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to TED4 (Zinnia elegans) 2




Miscellaneous acyl lipid metabolism

1.00 4.34
At1g14980 0.600 CPN10 Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs. 0.2 0 0 0 0 0 0 0.1 0 0 0 0 0 -0.4 -0.1 -0.1 -0.1 -0.1 -0.1 0 -0.1 -0.2 -0.1 -0.3 -0.4 0 0.1 0.5 0 0.1 0.5 0 -0.5 0.4 0 0.2 0 -0.3 0.2 0 0.2 0 0.1 0 0 -0.1 0 0 -0.2 0 0 -0.1 0.3 0.1 0 0 0.2 0.2 0.1 0 0 0 -0.9 -0.4 -0.3 -0.3 0.5 0.4 0 0 0.7 -0.5 0 0 -0.2 -0.2 0.1 0 0.4 0.5 0 -0.3 0.3 0.1 0 0 0 -0.2 0 -0.2 -0.4 -0.2 -0.2 0 -0.3 0 -0.4 -0.1 0 0.3 -0.3 0.3 0.4 0.1 1.2 At1g14980 260714_at CPN10 Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs. 10 response to heat | protein folding


Protein folding / chaperonins (chloroplast)


0.95 2.24
At1g74020 0.593 SS2 strictosidine synthase family protein / AtSS-2 strictosidine synthase (SS) 0 0 -0.2 0 -0.2 -0.1 0.2 0 -0.2 -0.1 -0.3 -0.3 0 1.5 -0.5 0 0.3 -0.4 -0.3 -0.3 -0.3 -0.5 -0.8 -0.1 -0.1 -0.2 0.4 1.4 -0.2 0.4 1.4 0 -0.1 -0.3 0 0.2 0 -0.1 0.1 0.3 0 0.4 0 0.1 0 0 0.1 0.2 0 0.1 -0.3 0 0.1 0 0.5 0.1 0.3 -0.4 0 0 0 -0.1 -1.1 -0.5 -0.8 -0.4 -0.1 -0.1 -0.1 -0.1 2.3 0.4 0 0 -0.1 -0.1 0 0 -0.3 -0.1 -0.6 -0.3 0 0 -0.1 0 0 -0.2 0 0 0 -0.2 0 -0.1 -0.1 -0.1 0 0 0 0 0 0 0.1 0 1.4 At1g74020 260391_at SS2 strictosidine synthase family protein / AtSS-2 strictosidine synthase (SS) 2


Terpenoid biosynthesis | Indole and ipecac alkaloid biosynthesis



1.05 3.47
At1g65290 0.590
acyl carrier family protein / ACP family protein 0 0 0 -0.1 0 0 0 0 0.1 0 0 0 0 -0.3 0 0 0 0 0 0 0 -0.1 -0.1 -0.2 -0.3 0 0.1 0 0 0.1 0 -0.2 -0.5 -0.2 0 0 -0.1 0 0.2 0.1 0.2 0 0.2 0.1 0.1 0 0.1 0 -0.1 0.1 0.1 -0.1 0.3 0.1 0 0.1 0.1 0.2 0.1 0.2 0.1 0.1 -1.9 -0.1 -0.1 -0.1 0 0.4 -0.2 -0.1 0.3 0 0 0 0 0 0 -0.4 0.6 0.8 0 -0.2 0 0 0 0 -0.1 0 0 0 0 -0.2 0 -0.2 0.1 -0.1 0.1 0 0 -0.1 0.1 -0.1 0.3 0 0.1 At1g65290 264162_at
acyl carrier family protein / ACP family protein 2


Oxidative phosphorylation
metabolism of acyl-lipids in mitochondria

0.58 2.76
At3g22840 0.589 ELIP1 chlorophyll A-B binding family protein / early light-induced protein (ELIP) -0.1 0 0 0 -0.3 -0.7 -0.3 -0.2 -0.5 -0.2 -0.1 -0.3 0.3 1.6 -0.5 -0.6 -1 -0.3 0 -0.2 -0.3 0.1 -0.2 -0.7 -1.3 0.1 0.2 0.4 0.1 0.2 0.4 0 0.2 1.5 0.3 0.4 -0.2 -1 0.6 0.3 0 0.1 0.5 0.3 0.2 0.1 0 -0.2 0 0.4 0.1 -0.2 0.9 0.2 -0.5 -0.1 -0.3 0.3 0.4 0.5 -0.5 0.5 -1.5 -0.8 0 -0.8 0.2 1.2 0.2 0 1.4 0 0.4 0.2 0.7 0.7 0 0 1 -0.2 -0.8 -1.1 0 0.2 0.1 0.1 0.2 0.1 -0.2 -2.8 -3.3 0.1 2.2 -0.3 -2.4 -0.4 -1.3 0 1.3 0.8 -3.3 1.4 0 0 6.1 At3g22840 258321_at ELIP1 chlorophyll A-B binding family protein / early light-induced protein (ELIP) 8



Photosystems | additional photosystem II components | Early light-inducible proteins


2.74 9.52
At3g27380 0.586 SDH2-1 One of three isoforms of the iron-sulfer component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complexII. The product of the nuclear encoded gene is imported into the mitochondrion. 0 -0.1 -0.1 0 0 0 0 -0.1 -0.1 0.1 0 0 0.1 0.7 0 0 -0.1 0 0 0 -0.1 0 0 -0.2 -0.4 0.4 0.5 1.2 0.4 0.5 1.2 -0.2 -0.3 -0.3 0 0.1 0 -0.5 0 -0.1 0 0 0 0 0 0 0.1 -0.1 0 0 0 0.1 0 0 0.1 0 0 -0.1 0 0 0 0 -0.7 -0.4 -0.3 -0.3 0 0.2 0.1 0 0.3 0 -0.1 0 0 -0.1 0 0 0.4 0.5 0.2 -0.2 -0.2 -0.1 0 -0.1 0 -0.1 0 -0.2 -0.9 -0.1 0.3 -0.3 -1.1 -0.1 -0.7 0 0 0.2 -0.8 0.2 0.6 0.1 1.8 At3g27380 257713_at SDH2-1 One of three isoforms of the iron-sulfer component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complexII. The product of the nuclear encoded gene is imported into the mitochondrion. 4
C-compound and carbohydrate metabolism | tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) mixed acid fermentation | acetyl-CoA assimilation | aerobic respiration -- electron donors reaction list | TCA cycle variation VII | TCA cycle variation VIII | TCA cycle variation IV | TCA cycle -- aerobic respiration Citrate cycle (TCA cycle) | Oxidative phosphorylation Intermediary Carbon Metabolism | Gluconeogenesis from lipids in seeds


1.06 2.98
At4g32470 0.585
similar to Ubiquinol-cytochrome C reductase complex 14 kDa protein (Solanum tuberosum) 0 0 0 0 0 0 0 0 0.1 0 -0.1 0 -0.2 -0.1 0 0 0 0 -0.1 -0.1 0 -0.2 -0.1 -0.1 -0.2 -0.1 0 0 -0.1 0 0 -0.2 -0.3 -0.2 0.1 0.1 0 -0.4 0.1 0.1 0.1 0.1 0.1 0.1 0 0 0 0.1 0 0.2 0 0 0.1 0.1 0 0 0 0.1 0 0 0 -0.1 -0.9 0 -0.2 -0.1 0.1 0.4 0 0 1 0.1 0 0.1 0 -0.1 0.1 0 0.5 0.6 0 0 0.1 0 0.1 -0.1 0 0 0.1 0 0 -0.1 0 -0.1 0 0 0.1 0 0 0 0.1 -0.1 0 0 0.2 At4g32470 253436_at
similar to Ubiquinol-cytochrome C reductase complex 14 kDa protein (Solanum tuberosum) 4
electron transport and membrane-associated energy conservation | accessory proteins of electron transport and membrane-associated energy conservation | respiration | aerobic respiration
Oxidative phosphorylation



0.48 1.98
At4g14800 0.577 PBD2 20S proteasome beta subunit D2 (PBD2) (PRCGA) -0.1 0 0 0.1 -0.1 0 0 -0.1 0 0 -0.1 -0.1 -0.1 -0.3 -0.1 0 -0.2 -0.1 0 -0.2 -0.1 -0.1 -0.1 0 0 -0.2 0.1 0.3 -0.2 0.1 0.3 -0.2 -0.5 -0.4 0 0 0 -0.4 0.2 0.1 0.3 0.2 0.2 0 0 -0.1 0.1 0 0 0.2 0.1 0 0 0 0.1 0 0 0.6 0.1 -0.1 0.1 0 -1.6 0 -0.1 0 0.3 0.2 0 0 0.4 -0.3 -0.1 0 -0.1 0 0.1 -0.1 0.5 0.4 0.5 0.4 0.1 -0.1 0 0 0 0.1 0 -0.1 0 -0.1 -0.2 -0.1 0 -0.1 0 0 -0.1 -0.1 0 -0.2 0.4 0.1 0.8 At4g14800 245315_at PBD2 20S proteasome beta subunit D2 (PBD2) (PRCGA) 6 proteasome core complex (sensu Eukaryota) | ubiquitin-dependent protein catabolism cytoplasmic and nuclear protein degradation
Folding, Sorting and Degradation | Proteasome



0.74 2.51
At1g51680 0.576 4CL1 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. -0.3 0.1 0 -0.2 -0.4 0 0.1 0.5 0 0.1 0.2 0 -0.1 0.2 -0.1 0 0.2 0 0 0.1 0.1 0.3 0 0.3 0.2 0 -0.4 0 0 -0.4 0 0 -0.1 -0.3 -0.2 -0.3 -0.1 -0.6 -0.1 -0.1 0 0 0 -0.1 0 -0.1 0.1 -0.1 -0.1 -0.1 0.1 0 0.1 0 0.7 0.3 0.1 0 0.1 0 0.1 0.2 -1.3 0 -0.1 -0.2 0 0.4 -0.1 -0.2 -0.5 0.7 0 0.2 0.1 0 0.1 -0.4 0.4 -0.8 -0.1 -0.5 0.1 0 0.1 0 0.1 0 -0.1 0.1 -0.2 0.2 0.1 0.2 0 0.1 0 0.1 0 0 -0.2 0 -0.3 0.3 0.6 At1g51680 256186_at 4CL1 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. 10 4-coumarate-CoA ligase activity | response to UV | response to pathogenic fungi | response to wounding | phenylpropanoid metabolism
lignin biosynthesis | flavonoid biosynthesis Stilbene, coumarine and lignin biosynthesis Phenylpropanoid Metabolism | core phenylpropanoid metabolism
Phenylpropanoid pathway Acyl activating enzymes , CoA ligases, clade IV, 4-coumarate-CoA ligase 0.87 2.14
At5g03850 0.575 RPS28B 40S ribosomal protein S28 (RPS28B) 0.2 0 -0.1 0 0 0 0 0.1 0 -0.1 0 -0.1 0 -0.3 -0.1 -0.2 0.1 -0.3 -0.2 0 -0.1 -0.3 0 -0.2 -0.3 0.2 0 0.3 0.2 0 0.3 0 -0.2 0.3 0.2 0.1 0.2 -0.4 0.2 0 0.1 -0.1 0.2 0 0 -0.1 0.1 0 -0.1 0 0.1 -0.2 0.2 0.1 0.1 0.2 0.2 0.3 0.3 0 0.1 -0.1 -0.9 -0.1 -0.3 -0.1 0.1 -0.1 -0.2 -0.1 0.4 0 0 0 0 -0.1 0 -0.2 0.4 0.4 0 -0.2 0.1 0.1 0.1 0.1 0 0.1 0 0 0 -0.2 0 -0.2 0 0 0 -0.1 0 -0.1 0 0 0.2 0 0.2 At5g03850 250895_at RPS28B 40S ribosomal protein S28 (RPS28B) 6
protein synthesis | ribosome biogenesis
Ribosome



0.68 1.47
At1g66670 0.574 CLPP3 One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). 0.1 0 -0.1 -0.1 -0.3 0 -0.2 -0.2 0 0 -0.1 -0.1 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.1 -0.3 -0.1 0 -0.1 0 0.1 0 0 0.1 0 -0.1 0 -0.1 -0.1 -0.1 0 -0.3 0.1 -0.3 0.2 -0.1 0.1 0 0.2 0 0.1 -0.1 -0.2 0 0.3 0 0.2 0 0.1 0 0 0.2 0.2 0 0.2 0.2 -0.9 0.2 0 0 0.3 0.3 0.3 0.3 -0.3 0 0 0 -0.2 0.2 0.1 0.3 0.5 -0.2 0.1 0.1 0.1 0.1 0 0 0 0 0 -0.2 -0.4 0.1 0.1 0 -0.2 0 -0.2 -0.1 0 0 0 0 0.1 0.4 1.2 At1g66670 256411_at CLPP3 One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). 4 chloroplastic endopeptidase Clp complex | ATP-dependent proteolysis


Chloroplastic protein turnover | ClpP protease complex


0.68 2.24
At5g50850 0.574 PDH2 pyruvate dehydrogenase E1 component beta subunit, mitochondrial / PDHE1-B (PDH2) 0 0 0 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 -0.2 0 -0.1 0 -0.1 -0.1 0 0 -0.1 -0.2 -0.1 -0.1 0 0 0.1 0 0 0.1 0 -0.1 -0.1 0.1 0 0.1 -0.3 0.1 0.1 0.1 0.1 0.1 0.1 0 0.1 0.1 0 0 0.1 0 0.1 0.2 0.1 0 0 0.1 0.2 0 0 0.1 0.1 -0.5 -0.2 -0.1 -0.1 0.2 0.6 0 0 0.2 0.1 -0.2 0 0 -0.1 0 0 0.3 0 0.3 0 0 0 0 0 -0.1 0 0 -0.1 -0.2 0 -0.2 -0.1 -0.1 -0.1 0 0 0 -0.2 0 -0.1 -0.1 0 0.2 At5g50850 248474_at PDH2 pyruvate dehydrogenase E1 component beta subunit, mitochondrial / PDHE1-B (PDH2) 10
C-compound and carbohydrate metabolism | glycolysis and gluconeogenesis | tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)
Glycolysis / Gluconeogenesis | Pyruvate metabolism | Butanoate metabolism | Valine, leucine and isoleucine biosynthesis Intermediary Carbon Metabolism


0.46 1.21
At3g11400 0.573 EIF3G1 One of the 2 genes that code for the G subunit of eukaryotic initation factor 3 (EIF3). 0.1 0 0 0.1 0.1 0 0 0 0 -0.2 -0.1 -0.1 -0.1 -0.2 -0.2 -0.2 0 -0.2 -0.2 0 -0.3 -0.5 -0.1 0 0.1 0 -0.1 0 0 -0.1 0 -0.2 -0.3 0 0 0.1 0 -0.3 0.1 0.1 0.2 0 0.3 0.1 0 0 0.1 0 0 0.1 0.1 -0.1 0.2 0 0 0 0.3 0.2 0.1 0.1 0 0.2 -1.4 0 -0.3 -0.1 0.3 0 0 0 0.3 -0.3 -0.1 0 -0.1 0 0 0 0.4 0.5 0.1 0 0.3 0.1 0 0 0 0 0 -0.1 0.1 0 0 -0.1 0 -0.1 0 -0.1 0 -0.2 0.1 -0.2 0.3 0.1 0.4 At3g11400 259238_at EIF3G1 One of the 2 genes that code for the G subunit of eukaryotic initation factor 3 (EIF3). 9 eukaryotic translation initiation factor 3 complex | translation initiation factor activity | translational initiation

Translation factors



0.66 1.99
At4g31300 0.571 PBA1 20S proteasome beta subunit A (PBA1) (PRCD) 0.1 0 0 0 0 -0.1 -0.2 0 0 -0.1 0 -0.2 -0.1 0 -0.2 -0.2 0.1 -0.2 -0.1 0.1 -0.2 -0.2 0 0 0 0.1 0 0.2 0.1 0 0.2 -0.2 -0.3 -0.2 0 0.1 0 -0.3 0.1 0 0 -0.1 0 0.1 -0.1 -0.1 -0.1 0 0 0.1 -0.1 -0.2 0.1 0 0 -0.1 0 0.3 0 -0.2 0 -0.1 -1.2 -0.1 -0.3 -0.2 0.4 0.2 0.3 0.2 0.6 0 0 0 -0.1 0 0.1 0.2 0 0.5 0 -0.1 -0.1 0.1 0.1 0 0.1 0.1 0.1 0 -0.1 0 0 -0.1 0 -0.1 0.1 -0.1 0.1 0 0.2 0 0.4 0 0.9 At4g31300 253521_at PBA1 20S proteasome beta subunit A (PBA1) (PRCD) 6 proteasome core complex (sensu Eukaryota) | ubiquitin-dependent protein catabolism storage protein
Folding, Sorting and Degradation | Proteasome



0.63 2.15
At1g63970 0.570 ISPF similar to 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Catharanthus roseus 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 -0.1 0 -0.1 0 0 -0.1 -0.2 0 -0.2 -0.1 0.1 -0.2 -0.3 0.1 -0.2 -0.3 0 -0.2 -0.3 -0.1 -0.1 0 -0.4 0.3 0.1 0.2 0.1 0.3 0.1 0.4 0 0.1 0.1 0.1 -0.1 0.2 0 0.2 0.1 0.1 0.1 0.2 0.4 0.2 0.4 0.2 0 -0.7 0 -0.1 0 0 -0.1 -0.2 -0.1 0.3 0 0.1 0 0 0.1 0.1 -0.1 0.5 0.2 -0.2 0 0 0 0.1 0 0 0 0 0 -0.5 -0.2 -0.1 -0.1 -0.3 -0.1 -0.2 0 0 0.1 -0.1 0 0 0.4 0.5 At1g63970 260324_at ISPF similar to 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase from Catharanthus roseus 4

isopentenyl diphosphate biosynthesis -- mevalonate-independent
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Biosynthesis of prenyl diphosphates
IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis | MEP (methylerythritol P) pathway, plastids
0.74 1.27
At5g13930 0.570 CHS chalcone synthase / naringenin-chalcone synthase. Participates in the biosynthesis pathway of all flavonoids. metabolismof defense and communication. Trancriptionally regulated by light. Required for the accumulation of purple anthocyanins in leaves and stems. -0.8 0 0 0 -0.3 -0.1 0 0.1 0 0 -0.5 -0.1 0 0 -0.3 -0.1 0 -0.2 -0.1 -0.2 -0.2 -0.2 0 0 -0.1 0.3 0.7 0.6 0.3 0.7 0.6 0 0.1 1.3 0.2 0.1 0 -1.1 0.2 0.2 0.4 0.1 0.4 0 0.3 -0.1 0.1 0 0 0 0.3 0 0.3 0.4 -1.3 0.2 0 0.3 0.3 0.4 0 0.1 -1.4 -0.6 -1.2 -0.7 -0.2 1.9 -0.4 -0.4 1 -1.1 0 0.1 0.2 -0.3 0.2 -0.6 1.3 0.2 -0.4 -0.1 -1.1 0.2 0.1 0.1 0.4 0 0 0 -4.4 0 1.8 0 -3.5 0 -1.5 0 0.8 0 -2.4 0 1.4 0 6.5 At5g13930 250207_at CHS chalcone synthase / naringenin-chalcone synthase. Participates in the biosynthesis pathway of all flavonoids. metabolismof defense and communication. Trancriptionally regulated by light. Required for the accumulation of purple anthocyanins in leaves and stems. 10 naringenin-chalcone synthase activity | flavonoid biosynthesis | chalcone biosynthesis biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine | biosynthesis of phenylpropanoids flavonoid biosynthesis Flavonoid biosynthesis Phenylpropanoid Metabolism | Flavonoid and anthocyanin metabolism
flavonoid, anthocyanin, and proanthocyanidin biosynthesis
2.57 10.98
At3g55120 0.567 TT5 chalcone-flavanone isomerase / chalcone isomerase (CHI). Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. 0 0 -0.2 -0.2 -0.5 -0.3 -0.4 0 0 0 -0.3 0 0 0.2 -0.1 0 0.1 -0.1 0 0 0 0 -0.5 -0.2 0.1 0.2 0.6 0 0.2 0.6 0 0 -0.1 0.5 0 0.1 0 -0.9 0.5 0.1 0.4 0 0.5 0 0.5 0 0.3 -0.1 -0.1 0.1 0.3 -0.1 0.5 0.1 -0.8 0 0.2 0.2 0.5 0 0.1 0.3 -0.9 -0.4 -0.2 -0.4 -0.4 0.6 -0.5 -0.7 0.3 -0.1 0.2 0 0.2 0.2 0.1 -0.6 0.2 -0.2 -0.5 -0.3 -0.6 0 0 0 0.2 0 -0.1 -0.2 -1.2 0 1.5 -0.1 -0.6 -0.1 -0.2 0 0.7 -0.2 -0.6 0 0.9 0 2 At3g55120 251827_at TT5 chalcone-flavanone isomerase / chalcone isomerase (CHI). Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. 10 extrinsic to endoplasmic reticulum response to UV | flavonoid biosynthesis | chalcone isomerase activity secondary metabolism flavonoid biosynthesis Flavonoid biosynthesis Phenylpropanoid Metabolism | Flavonoid and anthocyanin metabolism
flavonoid, anthocyanin, and proanthocyanidin biosynthesis
1.28 3.26
At3g22630 0.566 PBD1 20S proteasome beta subunit D 0 0 0 -0.1 0 0 -0.1 0 0.1 0 0 -0.1 -0.1 -0.3 0 -0.1 0 -0.1 -0.2 0 0 -0.1 -0.1 0 0 0.1 0 0 0.1 0 0 0 -0.2 0.1 -0.1 0.2 -0.1 -0.4 0 0 0 0 0 0 -0.1 0.1 0 0.1 -0.3 0.2 0 0 0 0 0.1 0 0.1 0.2 -0.1 -0.1 0.1 0.1 -1.4 -0.2 0 -0.3 0.4 0 -0.1 0 1 0 0 0 0.1 0.2 0.1 0.1 0 0.1 -0.2 -0.1 -0.2 0.1 0 0 -0.1 -0.1 0 0 0.1 0 -0.1 0 0 0 0 -0.1 0 0 0 0 0.4 0 1 At3g22630 256939_at PBD1 20S proteasome beta subunit D 6 proteasome core complex (sensu Eukaryota) | ubiquitin-dependent protein catabolism

Folding, Sorting and Degradation | Proteasome



0.51 2.45
At5g58290 0.565 RPT3 26S proteasome AAA-ATPase subunit (RPT3) 0 0 0 0 0 0 0 0 -0.1 0 0 -0.1 0 0 0 -0.1 -0.1 -0.1 0 0 -0.2 0 0 0 0 0.2 0.2 0.5 0.2 0.2 0.5 -0.2 -0.2 -0.1 0 0 -0.1 -0.4 0 0.2 0 0.1 0 0.1 -0.1 0 -0.1 0.1 -0.1 0 -0.1 0.1 0 0 0.1 -0.2 -0.1 0.4 -0.1 -0.1 0 0 -2 -0.2 -0.3 -0.2 0.2 0 0.3 0.3 0.3 0 -0.1 0 0.1 0 0.1 0.4 0 -0.1 0.2 0.1 0 0 0 0 0 0 0 0 0.1 0 0 -0.1 0 -0.1 0 0 0 -0.1 0.1 0 0.4 0 0.8 At5g58290 247810_at RPT3 26S proteasome AAA-ATPase subunit (RPT3) 7 proteasome regulatory particle, base subcomplex (sensu Eukaryota) | ATPase activity | ubiquitin-dependent protein catabolism

Folding, Sorting and Degradation | Proteasome



0.66 2.81
At1g47250 0.562 PAF2 20S proteasome subunit PAF2 (PAF2) -0.1 0 -0.1 0 0 -0.1 0 0 -0.1 0 -0.2 -0.2 0 -0.3 -0.1 -0.2 -0.2 -0.2 0 -0.2 -0.2 -0.2 0 0 -0.1 0.1 0.1 0.3 0.1 0.1 0.3 -0.5 -0.5 -0.3 0.2 0 0.1 -0.1 0.4 -0.2 0.4 -0.2 0.4 0 0.1 -0.1 0.2 -0.1 0 -0.1 0.4 0 0.3 0.3 0.2 0.3 0.2 0.8 0.3 0 0.2 0.3 -1.4 0 -0.3 0 0 0.4 -0.2 0 0 -0.4 0 0 -0.1 0 0 -0.3 0.3 0.1 0 0.3 -0.4 0 0 -0.2 0 -0.1 0 0.1 -0.2 0 -0.1 0 -0.1 0 -0.1 0.1 0 -0.1 0 0.1 0.4 0.1 0.9 At1g47250 260503_at PAF2 20S proteasome subunit PAF2 (PAF2) 6 proteasome core complex (sensu Eukaryota) | ubiquitin-dependent protein catabolism

Folding, Sorting and Degradation | Proteasome



0.76 2.39
At1g54270 0.562 EIF4A-2 member of eIF4A - eukaryotic initiation factor 4A family 0.2 0 0 0.1 0.1 -0.1 0.1 0.4 -0.1 0 -0.1 -0.2 -0.2 0.5 -0.3 -0.3 0 -0.3 -0.2 0 -0.3 -0.3 0.1 0 -0.1 0.3 0.4 0.8 0.3 0.4 0.8 -0.1 0 0.5 0 0 0.1 -0.2 0 0 0 -0.1 0 -0.1 -0.2 -0.2 0 0 -0.1 -0.1 0 -0.3 0.2 0 -0.1 -0.2 0.3 0 0.1 0 0.3 0.1 -1.1 -0.3 -0.3 -0.2 0.2 0.1 0 0 0.5 0 0 0 0 0 0 -0.2 0 -0.1 -0.1 -0.2 0.1 0.1 0.1 -0.1 0 0 0 0 -0.1 -0.1 0 -0.1 -0.2 -0.1 0 0 0 -0.1 -0.1 0 0.4 -0.1 0.4 At1g54270 262956_at (m) EIF4A-2 member of eIF4A - eukaryotic initiation factor 4A family 2


Translation factors



0.80 2.00
At3g13920 0.562 EIF4A1 eukaryotic translation initiation factor 4A-1 / eIF-4A-1, eIF-4A-1 0.2 0 0 0.1 0.1 -0.1 0.1 0.4 -0.1 0 -0.1 -0.2 -0.2 0.5 -0.3 -0.3 0 -0.3 -0.2 0 -0.3 -0.3 0.1 0 -0.1 0.3 0.4 0.8 0.3 0.4 0.8 -0.1 0 0.5 0 0 0.1 -0.2 0 0 0 -0.1 0 -0.1 -0.2 -0.2 0 0 -0.1 -0.1 0 -0.3 0.2 0 -0.1 -0.2 0.3 0 0.1 0 0.3 0.1 -1.1 -0.3 -0.3 -0.2 0.2 0.1 0 0 0.5 0 0 0 0 0 0 -0.2 0 -0.1 -0.1 -0.2 0.1 0.1 0.1 -0.1 0 0 0 0 -0.1 -0.1 0 -0.1 -0.2 -0.1 0 0 0 -0.1 -0.1 0 0.4 -0.1 0.4 At3g13920 258210_at (m) EIF4A1 eukaryotic translation initiation factor 4A-1 / eIF-4A-1, eIF-4A-1 6


Translation factors



0.80 2.00
At2g16510 0.561 AVA-P1 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) 0 0 0.1 0.1 0 0 0 -0.3 0 0 -0.1 0 -0.1 -0.4 0 -0.1 -0.2 0 0 -0.2 0 0.1 -0.2 0 -0.1 0.2 0.2 0 0.2 0.2 0 0 0 0 -0.1 0 0 -0.3 0 0 0.1 0 0.1 0 0 0 0.1 0 0.1 0 0 0 0 0.2 0 0.1 -0.1 0 0 0.1 0.1 0.1 -1.2 0 0 0 0.1 0.3 0 0 0.2 0.2 0 0 0 0 0 0.1 0.1 0 0 -0.2 0 0 0 0 0 0.1 0 0 -0.1 -0.1 -0.1 -0.1 0 0 -0.1 0 0 0 0 0 0 0.3 0.1 At2g16510 263267_at AVA-P1 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) 6


ATP synthesis



0.50 1.64
At1g11750 0.555 CLPP6 One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). -0.1 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 -0.2 0 -0.2 -0.1 0.1 -0.1 -0.3 0 -0.1 -0.4 0 0.1 0 0 0.1 0 -0.2 -0.1 -0.2 0 -0.2 0 -0.4 0.1 0 0 0 0.1 0.1 0.1 0 0 0.1 0 0 0 -0.1 0.3 0 0 0 0.1 0.1 0 0 0.1 0 -0.6 -0.2 -0.3 -0.2 0.1 0 0 0.1 -0.1 -0.1 0 0 0 0.2 0 0 0.6 0.5 0.1 0 0 0 0 -0.1 0 0 0 0.1 -0.1 0 0.2 0.1 0 0 0 0 0 0 0 -0.1 0.1 0.2 0.7 At1g11750 262823_at CLPP6 One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). 4 chloroplastic endopeptidase Clp complex | ATP-dependent proteolysis

Folding, Sorting and Degradation | Protein folding and associated processing Chloroplastic protein turnover | ClpP protease complex


0.51 1.39
At5g37510 0.555
similar to NADH-ubiquinone oxidoreductase 75 kDa subunit from Solanum tuberosum 0 0 0 0 0.1 0 -0.1 0 0.1 -0.1 0 0 -0.1 0 0 -0.1 0 -0.2 -0.2 0 -0.1 -0.2 0 0 0 0 0 0 0 0 0 -0.1 -0.3 -0.4 0.2 0 0.1 -0.2 0 0.3 0 0.3 0.1 0.1 0 0 0 0 0 0.2 0 0 0.1 0.1 -0.1 -0.1 -0.1 0 -0.1 0 -0.1 0 -1.3 -0.2 -0.4 -0.1 0.2 0.3 0 0 -0.1 0.1 -0.2 0.1 0 0 0 0 0.3 0.4 0.2 0 -0.1 0 0 0 0 0.1 0 0 0 0 0 0 0 -0.1 0 0 0.1 0 0 0 0.2 0 0.5 At5g37510 249627_at
similar to NADH-ubiquinone oxidoreductase 75 kDa subunit from Solanum tuberosum 4
electron transport and membrane-associated energy conservation carbon monoxide dehydrogenase pathway | acetate fermentation | respiration (anaerobic)-- electron donors reaction list Oxidative phosphorylation



0.55 1.92
At2g48140 0.554
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to pEARLI 1: an Arabidopsis member of a conserved gene family (PGF95-099) 0 0 0 -0.3 -0.3 0.1 0 0.4 0 -0.3 -0.2 0 0.2 1.5 -0.1 0 -0.1 -0.4 -0.8 -1 0.2 0 -0.3 0 0 0 0 0 0 0 0 -0.2 -0.4 -0.7 0 0.1 0 0 0 0.5 -0.4 0 0.2 0.5 -0.2 0.1 0.1 0.7 0.3 0.5 0.3 0.9 0.4 -0.1 0 0.3 1.1 0.3 0.6 0.4 0.8 -0.2 -3.6 0.3 -0.5 0.3 -1.3 2.5 -1.2 -1.2 0.7 -0.1 0 0.1 0.1 0.2 0 -1.1 0 0 0 0 0 0 0 0 0 0 0 0 -0.6 0.1 0.2 0.2 -0.6 0 0 0.2 0.3 0.3 0 0 0.5 0 0 At2g48140 262317_at
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein, similar to pEARLI 1: an Arabidopsis member of a conserved gene family (PGF95-099) 2

arginine biosynthesis I | de novo biosynthesis of pyrimidine ribonucleotides

Miscellaneous acyl lipid metabolism

1.70 6.25
At1g10370 0.551 ATGSTU17, GST30B ERD9 glutathione S-transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). 0 0 -0.3 0 -0.5 0 -0.1 0 -0.2 0.1 0 -0.1 1.1 2.5 -0.3 -0.1 0 0 0.4 0 -0.4 0.3 0.5 -0.5 -1.2 0 0.4 0.1 0 0.4 0.1 -0.2 -0.6 -1.1 0 -0.1 -0.4 -1 0.2 -0.4 0.4 -0.6 0.6 -0.6 0.3 -0.3 0 -0.6 0 0 0.2 -0.2 0.8 0.1 0.5 0.3 -0.4 0.6 0.6 0 0.1 0.3 -1.4 -0.4 0 -0.7 -0.5 3.6 -0.2 -0.4 1 -0.4 0.1 0.1 0.2 0.5 0.4 -0.3 -0.2 -1 -0.8 -0.8 -0.7 0 0 0 0.7 0 0 -1.3 -1.6 -0.1 0.9 -0.2 -1.2 -0.1 -0.5 -0.1 0.5 0.3 -0.4 0.3 0.4 0.8 2.9 At1g10370 264436_at ATGSTU17, GST30B ERD9 glutathione S-transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). 2 toxin catabolism





Glutathione S-transferase, Tau family 2.04 5.36
At1g79550 0.551 PGK cytosolic phosphoglycerate kinase (PGK) 0.2 0 0 0 0 0 0 0 0 0 0 0 -0.1 -0.4 0 -0.2 -0.1 0 -0.1 -0.1 -0.1 -0.1 -0.1 -0.2 -0.3 0.1 0.1 0.5 0.1 0.1 0.5 0 -0.4 -0.1 0.1 0.2 0 -0.3 0 0.1 0 0.1 0 0.1 0 0 0 0.1 -0.1 0.2 -0.1 0 0.2 0.1 0 0 0.1 0.2 0 0.1 0.1 0 -0.8 -0.3 -0.5 -0.4 0.1 0.6 0 0 0.3 0 -0.1 0.1 0 -0.1 0 -0.1 0 0.1 0.1 0 0 0.1 0 0 0.1 0 0 -0.2 -0.2 -0.2 0 0 -0.1 0 0 -0.2 0.1 0.2 -0.1 0.3 0 -0.1 0.6 At1g79550 262944_at PGK cytosolic phosphoglycerate kinase (PGK) 4
C-compound and carbohydrate metabolism | glycolysis and gluconeogenesis gluconeogenesis | glycerol degradation II | Calvin cycle | sorbitol fermentation | fructose degradation (anaerobic) | acetate fermentation | glycolysis I | glyceraldehyde 3-phosphate degradation | glycolysis IV Glycolysis / Gluconeogenesis | Carbon fixation Intermediary Carbon Metabolism | Gluconeogenesis from lipids in seeds


0.68 1.51
At2g34630 0.548 GPPS geranyl diphosphate synthase (dimethylallyltransferase, putative / prenyl transferase, putative) 0.1 0 0 0 0 0 0 0.1 0 0 -0.2 0 0 0.2 0 0 0 -0.2 0 0 -0.1 0 -0.1 -0.1 -0.1 0.1 0.4 0.3 0.1 0.4 0.3 -0.2 -0.2 -0.2 0 0 -0.1 0 0.1 -0.1 0 -0.3 0 -0.1 0 -0.3 -0.1 0 0 0 0.1 -0.1 0.3 0 0.1 -0.2 0.2 0.2 0.2 0 0.1 0.3 -0.7 -0.1 0 -0.1 0.1 0.4 0 -0.1 0.1 -0.2 0.1 0.1 -0.2 0 0.1 0 -0.3 -0.3 0 -0.1 -0.2 0 0 -0.1 0 0 0 -0.3 -0.8 0 0.4 0.1 -0.8 0.1 -0.4 0 0.3 0.2 -0.7 0.2 0.3 0.2 1.4 At2g34630 266958_at GPPS geranyl diphosphate synthase (dimethylallyltransferase, putative / prenyl transferase, putative) 10 dimethylallyltranstransferase activity
polyisoprenoid biosynthesis
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Biosynthesis of prenyl diphosphates
prenyl diphosphate (GPP,FPP, GGPP) biosynthesis
0.75 2.35
At2g17420 0.547 NTRA NADPH-dependent thioredoxin reductase, major cytosolic isoform 0.2 0 0 0.2 0 0 0.2 0 -0.3 0 0 -0.2 -0.1 0.2 -0.2 -0.3 -0.1 -0.5 -0.3 0.1 -0.4 -0.1 0 0 -0.1 0.3 0.4 0.4 0.3 0.4 0.4 -0.1 -0.2 -0.2 0 0 -0.1 -0.4 0.1 0.3 0.2 0.3 0.1 0.3 0 0.1 0 0.2 0 0 0 0 0 0.1 0.3 0 0.1 0 0 -0.1 0 0 -0.9 -0.3 -0.5 -0.2 -0.1 0.7 0 -0.2 0.4 0.2 -0.1 0 0 0 0 -0.1 -0.5 -0.3 0.5 0.1 0 0 0 0 -0.1 0 -0.1 0 -0.1 -0.1 0 0 -0.2 0.1 -0.1 -0.1 0.1 0 0 0 0 0.3 0.8 At2g17420 264904_s_at NTRA NADPH-dependent thioredoxin reductase, major cytosolic isoform 9 thioredoxin-disulfide reductase activity

Nucleotide Metabolism | Pyrimidine metabolism



0.85 1.84
At3g51240 0.547 F3H Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. -0.4 0 0 0 -0.7 -0.3 -0.1 0.3 -0.1 -0.1 -0.3 -0.1 0.3 0.8 -0.3 0 0.2 -0.5 -0.2 -0.4 -0.2 0 0.1 0.2 0.5 0 -0.2 -0.4 0 -0.2 -0.4 0.1 0.1 2.2 0.3 0 -0.2 -2 0.6 0.2 0.5 0 0.6 0.1 0.3 0 0 -0.2 0.2 0.3 0.2 -0.4 0.9 0.1 -2.1 0.2 -0.1 0.5 0.5 0.1 -0.2 0.2 -2.2 -0.3 -1 -0.6 -0.5 2.3 -0.7 -0.9 0.8 -0.4 0.1 0 0.2 0.1 0.1 -1.2 0.3 -0.1 -1.2 -0.3 -0.7 0.1 0 0.1 0.5 0.2 -0.1 -2.1 -2.8 0.1 2.6 -0.2 -1.8 -0.1 -1 0.1 1.4 0.6 -1.4 1 1.9 1.2 5 At3g51240 252123_at F3H Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. 10 flavonoid biosynthesis | naringenin 3-dioxygenase activity secondary metabolism flavonoid biosynthesis Flavonoid biosynthesis Phenylpropanoid Metabolism | Flavonoid and anthocyanin metabolism
flavonoid, anthocyanin, and proanthocyanidin biosynthesis
3.12 7.86
At3g22110 0.546 PAC1 Encodes the alpha-3 subunit of 20s proteasome. 0 0 0 0 0.1 0 0 0 0 0 0 0 0 0 0 0 -0.2 0.1 0 0 0 -0.1 0 0 0 0.2 0.1 0.6 0.2 0.1 0.6 -0.2 -0.3 -0.2 0 0 0.1 -0.3 0 0 0.2 0.2 0.1 0 0 0 0 0 -0.1 0.2 -0.1 0 0.2 0.1 0 0.1 -0.1 0.2 0.1 0 0 0 -1 -0.2 -0.3 -0.2 0.1 0 0 0 0.1 -0.1 -0.1 0 0 0 0 0 0.2 0.2 0 -0.1 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 0 -0.1 0 -0.1 0 0 0 0 0 0 0.2 -0.1 0.2 At3g22110 256795_at PAC1 Encodes the alpha-3 subunit of 20s proteasome. 6 proteasome core complex (sensu Eukaryota) | ubiquitin-dependent protein catabolism

Folding, Sorting and Degradation | Proteasome



0.51 1.70
At4g02580 0.546
similar to NADH-ubiquinone oxidoreductase 24 kDa subunit (Bos taurus) 0 0 0 -0.1 0 0 -0.1 -0.1 0 0 0 0 -0.1 0 0 -0.1 -0.1 -0.1 -0.1 0 -0.1 -0.2 0 0 0 0.1 -0.1 -0.1 0.1 -0.1 -0.1 -0.1 -0.4 -0.4 0 0 0 -0.3 0.1 0.1 0.2 0 0 0.1 0.1 -0.1 0.1 0 -0.1 0 0 0 0.2 0.3 0 0 0.1 0.2 0.1 0.1 0.1 0.1 -0.7 0 -0.1 0 0.1 0.2 0 0 0.3 0.1 0 0 0 0 0 0 0.4 0.2 0.2 0 -0.1 0 0 0 0 0.1 0 0 0 0 0 0 0 0 0 0 0 0 0.1 0 -0.1 -0.2 0.3 At4g02580 255442_at
similar to NADH-ubiquinone oxidoreductase 24 kDa subunit (Bos taurus) 2
respiration | aerobic respiration | transported compounds (substrates) | electron / hydrogen transport | transport facilitation aerobic respiration -- electron donors reaction list Oxidative phosphorylation



0.49 1.16
At5g16010 0.546
3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein 0 0 0 0 -0.2 0.1 0.3 0.2 0 0.1 -0.1 0 0.2 0.4 0 0 0 0 0 0 0 -0.1 0 0.4 0.3 0 -0.2 -0.1 0 -0.2 -0.1 0 0.1 -0.3 0 0 -0.1 -0.4 0 0.1 0 0.1 0 0.1 0 0.1 0 0.1 -0.1 0 0 0.2 0.2 0 0.6 0 -0.2 0.1 0 0 0.1 -0.1 -1.7 -0.6 -0.7 -0.5 0.1 0.4 0.2 0.1 0.2 0.2 0.1 0.2 -0.2 0.1 0.1 0.3 0 0.1 0.1 0 0 0.2 0.2 0 0.1 0.1 0 -0.2 -1.3 0 0.3 0 -0.9 0.1 -0.4 0 0.3 0.3 -0.3 0.2 0.1 0 0 At5g16010 246488_at
3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein 2
secondary metabolism brassinosteroid biosynthesis II | brassinosteroid biosynthesis III | brassinosteroid biosynthesis I




0.89 2.40
At1g15950 0.545 CCR1 Cinnamoyl CoA reductase isoform 1 (CCR1). Involved in lignin biosynthesis. -0.1 0 0.1 0.1 -0.1 0 0.1 0 0 0 -0.1 -0.1 0 0 -0.1 0.2 0.7 0 -0.1 0 -0.1 -0.2 -0.1 0.2 0.1 0 -0.2 -0.1 0 -0.2 -0.1 0 -0.2 -0.4 0.2 0.2 0.1 -0.2 0.1 0 0.1 0.1 0.1 0 0.1 0.1 0.2 0.1 0.3 0.1 0.2 0 0.3 0.1 0.3 0.1 0.5 0.1 0.2 0.2 0 0.2 -1.4 0 -0.1 0 0 0.1 0 0 0.2 0.4 0 0.1 0 0 0.1 -0.1 -0.3 -0.7 0 0 0 0.1 0 -0.1 0 0 0 -0.1 -1.1 0 0.3 0 -0.6 0 0 0 0.2 0 -0.6 -0.1 -0.3 0.3 0.3 At1g15950 261792_at CCR1 Cinnamoyl CoA reductase isoform 1 (CCR1). Involved in lignin biosynthesis. 10 cinnamoyl-CoA reductase activity | lignin biosynthesis
lignin biosynthesis
Phenylpropanoid Metabolism | core phenylpropanoid metabolism
Phenylpropanoid pathway
0.75 2.20
At5g19440 0.543
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function; NOT a cinnamyl-alcohol dehydrogenase -0.3 -0.2 -0.2 -0.1 0.1 -0.1 -0.1 -0.1 -0.1 -0.2 -0.3 -0.2 -0.1 0.1 -0.2 -0.1 0 -0.2 -0.2 -0.1 -0.2 -0.3 -0.4 -0.1 -0.1 -0.2 -0.1 0 -0.2 -0.1 0 -0.3 -0.5 -0.4 0.1 0.3 0 -0.2 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 -0.2 0.1 0.5 0 0.5 0 1.4 -0.1 1.1 0 0.8 0.5 1.2 0 -1.2 -0.2 0.9 0 0.2 0.5 0.3 0.2 1 -0.1 -0.1 0 0 0 0 0.5 0.3 0 -0.3 -0.1 -0.6 -0.2 -0.2 -0.2 -0.2 0 0 -0.2 0 -0.2 0 -0.1 -0.1 -0.2 -0.1 -0.1 0 -0.2 0 0 0.8 -0.1 1.1 At5g19440 246042_at
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function; NOT a cinnamyl-alcohol dehydrogenase 2
C-compound, carbohydrate catabolism lignin biosynthesis


Phenylpropanoid pathway
1.23 2.72
At5g14660 0.541 PDF1B encodes a peptide deformylase-like protein -0.1 0 0 0.2 -0.3 -0.1 0 -0.1 0 0 -0.2 -0.1 0 -0.2 0 -0.2 -0.2 -0.1 -0.2 -0.2 -0.3 -0.2 -0.2 -0.1 -0.3 0 0 0.2 0 0 0.2 0.1 0 0 0.2 0 0.2 -0.4 0.1 0 0 0 0 0.2 0 0 0 0.1 -0.3 0.1 0.2 0.1 0 0 -0.2 0 -0.1 0.1 0.1 0 0 0 -1 -0.4 -0.7 -0.4 0.3 0 -0.1 0 -0.3 0 0.2 -0.4 -0.2 0 -0.2 -0.1 0.5 0.6 0.1 0 0.2 0 0.1 0.1 0.1 0.1 0 0 -0.6 0 1 0 -0.3 0 0.7 0 0.8 0 0 0 0.4 0.3 1 At5g14660 250146_at PDF1B encodes a peptide deformylase-like protein 10
protein modification

Translation (chloroplast)


0.98 2.06
At5g01410 0.539
stress-responsive protein, putative, similar to ethylene-inducible protein HEVER (Hevea brasiliensis) 0.4 0 -0.1 0 -0.1 0 -0.1 -0.1 0 0 0 0 -0.1 -0.3 0 0 0.1 0 0 0.2 0 -0.3 0 -0.3 -0.4 0.3 0.1 0.1 0.3 0.1 0.1 0 -0.3 -0.2 0 0 -0.1 -0.4 0.2 0 0.1 0 0.1 0 0.2 0 0 -0.1 -0.3 0.2 0.3 0 0.3 0.2 0.2 0 -0.3 0.2 0.1 0.4 0.1 0 -1.1 -0.6 -0.4 -0.6 0.1 0.2 0.3 0.3 0.1 0 0 -0.1 0 0.1 0 0.3 -0.1 -0.7 0.4 -0.3 0.1 0.1 0 0.1 0.1 -0.1 0.2 -0.3 -1.2 -0.1 0.9 -0.2 -0.9 0 -0.1 -0.1 0.3 0.2 -0.7 0.5 0.3 0.3 1.9 At5g01410 251091_at
stress-responsive protein, putative, similar to ethylene-inducible protein HEVER (Hevea brasiliensis) 2
biosynthesis of vitamins, cofactors, and prosthetic groups
Vitamin B6 metabolism



1.09 3.20
At3g05560 0.538 RPL22B 60S ribosomal protein L22-2 (RPL22B) 0.2 0 0 0 0 0 0 0.1 -0.1 0 -0.1 -0.1 -0.1 -0.5 -0.1 -0.3 0 -0.2 -0.2 -0.1 -0.3 -0.3 -0.1 -0.2 -0.3 0 0.1 0.5 0 0.1 0.5 0 -0.2 0.2 0.2 0.1 0.1 -0.3 0.1 0 0.2 -0.1 0.1 0 0 -0.1 0 0.1 0 0 0 -0.2 0.3 0.2 0 0 0.2 0.1 0.1 0.1 0 0.1 -0.9 -0.2 -0.3 -0.1 0.3 0.3 -0.1 -0.1 0.1 -0.2 -0.1 0 -0.1 -0.1 0 -0.2 0.5 0.5 0.2 0 0.3 0.1 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 0.1 -0.1 0 -0.2 0.2 0.1 0.5 At3g05560 259112_at RPL22B 60S ribosomal protein L22-2 (RPL22B) 6


Ribosome



0.69 1.55
At4g38630 0.537 AT-MCB1 Arabidopsis thaliana multiubiquitin-chain-binding protein; 26S proteasome regulatory subunit S5A (RPN10 0.1 0 0 0.1 0.1 0.1 0 -0.1 0.1 0 0 0 0 0 -0.2 0 0 -0.2 0 0 0 0 0 0 0 -0.1 0.1 0.4 -0.1 0.1 0.4 -0.3 -0.6 -0.2 0.1 0.1 0 -0.2 -0.2 0 0 0 0 0 -0.2 -0.1 -0.1 0 -0.1 -0.1 -0.1 -0.1 0.1 0 0 -0.3 0 0.3 -0.1 -0.6 -0.1 0 -1.2 -0.3 -0.2 -0.1 0.6 0.3 0.1 0.4 0.5 -0.3 0 0.1 0 0 0.1 0.2 0.5 0.2 0.2 0.1 -0.1 0.2 0.1 0 0 0 0.2 -0.1 -0.1 -0.1 0 0 0 -0.1 0 0 0.1 -0.2 0 0 0.4 0.2 1.1 At4g38630 252955_at AT-MCB1 Arabidopsis thaliana multiubiquitin-chain-binding protein; 26S proteasome regulatory subunit S5A (RPN10 9 proteasome regulatory particle, base subcomplex (sensu Eukaryota) | peptide receptor activity | ubiquitin-dependent protein catabolism | protein catabolism protein degradation
Folding, Sorting and Degradation | Proteasome



0.76 2.33
At5g42180 0.537
peroxidase 64 (PER64) (P64) (PRXR4) 0.1 0.1 0 0.3 0 0 0.3 -0.3 -0.2 0.3 -0.3 0 0 -0.1 0 0.1 -0.1 0 0.1 -0.1 -0.2 0.4 -0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0 0.1 -0.5 0.2 0.3 0.2 -0.3 0 0 0.3 0.3 0.2 -0.2 0 0.1 0.1 0 0 0.2 -0.6 0 0.1 -0.1 -0.6 0.3 -0.5 0 0.2 0.2 -1.2 -0.1 -3.6 0.1 0 0 0 0 -0.4 -0.5 -0.3 0 0 0.2 0.1 0.2 0.2 -0.4 2.2 0.4 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0.1 0 0.1 0 0 0 0.1 0 0.2 0 0 0 0.1 -0.3 0.1 0.1 At5g42180 249227_at
peroxidase 64 (PER64) (P64) (PRXR4) 2


Methane metabolism | Prostaglandin and leukotriene metabolism | Phenylalanine metabolism | Stilbene, coumarine and lignin biosynthesis



0.90 5.91
At4g14910 0.535 GPD Encodes imidazoleglycerolphosphate dehydratase. 0 0 0 0 0.1 0 -0.2 0.2 0 -0.1 0.1 0 0 0.1 -0.1 -0.1 0 -0.1 0 0.2 0 -0.3 0 0 -0.2 0 0.3 -0.1 0 0.3 -0.1 -0.3 -0.2 -0.2 0 0 0.1 -0.3 0.1 0.1 0 0.1 0 0.1 -0.1 0 0 0.1 -0.1 0 0.1 0 0 -0.1 0 0 0 0.1 0 0 0 -0.2 -1.2 -0.2 0.1 -0.1 -0.1 0.4 0 0 -0.2 0.1 0.2 0 0 0.1 -0.1 0 0.7 0.3 0.1 0.1 0.1 0.1 0.1 0 0.2 0.1 0 -0.1 -0.4 0 0.1 0 -0.1 -0.1 0.1 0 -0.1 0 0 0 0.3 0 0.1 At4g14910 245287_at GPD Encodes imidazoleglycerolphosphate dehydratase. 9 imidazoleglycerol-phosphate dehydratase activity | histidine biosynthesis amino acid metabolism histidine biosynthesis I Histidine metabolism



0.57 1.97
At5g23250 0.532
succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative 0.1 0 -0.1 0 0 0 0 0.2 0 0 0 -0.1 0 -0.3 -0.2 -0.1 -0.1 -0.1 -0.1 0 -0.2 -0.2 0 0 0 0 0.1 0.2 0 0.1 0.2 0 -0.4 0 0.1 0 0.1 -0.2 0.3 -0.1 0.2 -0.4 0.3 -0.3 0 -0.3 0.2 0 -0.2 0 0.1 -0.1 0 0.1 -0.1 0 0.1 0.2 0.1 -0.2 0 0 -0.5 0 -0.4 -0.1 0.3 0.6 0 0 0.2 -0.3 0 0 0.1 0.1 0 -0.3 1 -0.3 0 0 0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 -0.1 0.2 0.1 0.7 At5g23250 249828_at
succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative 4
C-compound and carbohydrate metabolism | tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) serine-isocitrate lyase pathway | formaldehyde assimilation I (serine pathway) Citrate cycle (TCA cycle) | Propanoate metabolism Intermediary Carbon Metabolism


0.65 1.58
At3g52730 0.529
ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein 0.1 0 0 0 0 0 0 0.1 0.1 0 -0.1 0 0 -0.1 0 0 0 0 0 0 0 -0.2 0 -0.1 0 0.2 0.1 0.2 0.2 0.1 0.2 0 -0.4 0 0 0 0 -0.4 0 0 0.1 0 0 0 0 0 0 0 -0.4 0.1 0 -0.2 0 -0.1 0 0 -0.2 0 0.1 0 0 0 -1.4 -0.2 -0.1 -0.2 0.1 0.4 0 0 0.6 0 0 -0.1 0.1 0 -0.1 -0.1 0 0.2 0.1 -0.2 0.1 0 0 0.2 -0.1 0.1 -0.1 0 0.1 0 0 0 0 0.1 0 0.1 0 0 0.2 0.1 0.1 0 0.3 At3g52730 252012_at
ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein 2
respiration
Oxidative phosphorylation



0.55 2.18
At1g52760 0.526
esterase/lipase/thioesterase family protein, low similarity to monoglyceride lipase from (Homo sapiens, Mus musculus) 0.4 0 0 0 0 0 0.2 0.2 0 0.3 0 0 0 -0.4 0 0.4 0.4 0 0.2 0.3 0.1 0.3 -0.1 0 0 -0.2 -0.4 0.1 -0.2 -0.4 0.1 0 -0.2 -0.3 -0.3 -0.3 -0.1 -0.4 -0.1 0 0 0.1 0 0 0 0 0 0 0 0 0 0 0 0 0.1 -0.1 0.2 0 -0.2 0 -0.3 0 -2.7 0.1 -0.1 -0.2 0.4 0.2 0.2 0.2 0.6 0.2 0.1 0 0 0 0 0.1 0.6 -0.6 0.2 0 -0.2 0.1 0 0 0 0 0 0 0.3 0 0 0 0.2 0 0.1 0 -0.1 -0.1 0 -0.1 -0.1 0.3 0.5 At1g52760 260153_at
esterase/lipase/thioesterase family protein, low similarity to monoglyceride lipase from (Homo sapiens, Mus musculus) 2




Degradation of storage lipids and straight fatty acids

0.82 3.41
At4g34050 0.525 CCOMT caffeoyl-CoA 3-O-methyltransferase 0.3 0 0 0 0 0 -0.1 0 0 -0.1 0 -0.1 -0.2 0 -0.2 -0.3 0 -0.1 -0.2 0 -0.2 -0.3 -0.2 0 0 0.1 -0.3 -0.3 0.1 -0.3 -0.3 -0.1 0 -0.4 0 0 0 -0.4 0.2 0.4 0.3 0.4 0.2 0.2 0.3 -0.1 0 0.4 0.8 0.1 0.2 -0.1 0.8 0.6 0.3 -0.1 0.4 0.2 0.2 0.2 0.5 0.1 -0.9 0.2 0 0 0 0.7 -0.3 -0.2 0.4 0 -0.2 0.1 -0.1 -0.2 0 -0.5 0.2 -0.6 -0.2 -0.1 -0.2 0 0 -0.1 0.1 -0.1 -0.1 0.1 -0.3 0 0 0 -0.2 0 -0.1 0.1 -0.1 0 -0.2 0 -0.4 0.1 0.7 At4g34050 253276_at CCOMT caffeoyl-CoA 3-O-methyltransferase 10
biogenesis of cell wall suberin biosynthesis | lignin biosynthesis Stilbene, coumarine and lignin biosynthesis

Phenylpropanoid pathway Methyltransferase, CCOMT like 0.91 1.79
At2g31750 0.524
UDP-glucoronosyl/UDP-glucosyl transferase family protein -0.2 0.2 0 0 -0.2 0 -0.1 0 0.1 0 -0.3 -0.1 0 0.1 -0.4 -0.3 -0.1 -0.1 0 0.1 -0.1 0 0 -0.1 -0.2 0.2 -0.5 0.2 0.2 -0.5 0.2 0.1 -0.4 -0.3 0.1 0.1 0 -0.7 0 0 0 0 -0.2 0.1 -0.1 0.2 -0.2 -0.1 -0.1 0.2 0.4 0.1 0.4 -0.3 -0.1 0.1 0.4 0 0.6 0 1.2 0.2 -1.5 -0.7 0.6 -0.9 0.1 0.6 0.3 0.2 -0.5 0.4 0.2 0.1 0.1 0.6 0 0.3 0 0 -0.4 -0.3 -0.2 0 0 0.2 0.3 0.2 0 -0.1 -1.4 0.1 0.8 0.1 -0.9 0.1 -0.2 0 0.5 0.4 -0.7 0.2 -0.1 0.6 1.2 At2g31750 263473_at
UDP-glucoronosyl/UDP-glucosyl transferase family protein 1






Glycosyl transferase, Family 1 1.36 2.74
At3g12260 0.524
complex 1 family protein / LVR family protein 0 0 0.1 0 -0.1 0.2 0 -0.3 0.1 0.1 -0.1 0 0 -0.1 0 -0.3 -0.1 -0.1 -0.3 -0.1 -0.3 -0.3 -0.1 0.1 0.1 0.1 -0.1 -0.2 0.1 -0.1 -0.2 -0.1 -0.5 -0.2 0 0 0.2 -0.3 0 0 0.2 0 0 0.1 0 0 0 0 0 0.1 -0.1 -0.1 0.2 0.1 0.1 0.1 -0.1 0 0 0.1 0 -0.1 -1.4 -0.1 -0.5 -0.1 0.1 0.2 -0.3 -0.2 0.6 0.3 -0.1 0 0.1 0 0.4 -0.2 0.4 0.7 0.2 -0.1 -0.1 0 0 0.2 0 0.1 0 0 0 0 0 0 0 0 0 0 0.2 0 0.4 0 0 0.4 0.1 At3g12260 256267_at
complex 1 family protein / LVR family protein 2


Oxidative phosphorylation



0.71 2.20
At4g29410 0.524 RPL28C 60S ribosomal protein L28 (RPL28C) 0.3 0 0 0.1 0.1 0 0 0.3 0 0 0 0 0 -0.5 0 -0.2 0.2 -0.1 -0.1 0 -0.2 -0.3 0 -0.1 -0.2 0 0.3 0.4 0 0.3 0.4 -0.1 -0.4 0.4 0.1 0.1 0 -0.3 0.2 0 0.1 -0.3 0.1 0 -0.1 -0.2 0 0 -0.2 0 0 -0.3 0 0 -0.1 0 0 0.2 0 0 -0.1 0.1 -1.3 0 -0.1 -0.1 0.3 0.3 -0.2 -0.1 0.4 -0.5 0 -0.1 -0.1 -0.1 0 -0.2 0.7 0.6 0 0 0.2 0 0 0 0 0 0 0 -0.1 0 -0.2 -0.1 0 0 -0.1 0 0 -0.1 0 0 0.4 0 0.7 At4g29410 253728_at RPL28C 60S ribosomal protein L28 (RPL28C) 6


Ribosome



0.73 2.04
At5g45390 0.524 CLPP4 One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). -0.1 0 0 -0.2 0 0 -0.1 0 0 -0.2 0 0 -0.1 0 0.1 -0.2 0 0 -0.1 0 0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 -0.2 -0.1 -0.1 0 -0.5 0 0 0.1 -0.2 0.1 0 0.1 0 0.1 0 0 0 0.1 -0.1 0.3 0.1 0.1 0.1 0.1 0.1 0.2 0 0.1 0 -0.8 0 0 0 0 0.1 -0.1 0 0 0 0.2 -0.1 0 0.1 0 -0.1 0.4 0.2 0.1 -0.2 0 0 0 -0.1 0 0.1 0 0 -0.3 0 0 0 0 0 0 -0.1 0.1 -0.2 0.1 0 0.3 0 0.2 At5g45390 248950_at CLPP4 One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). 4 chloroplastic endopeptidase Clp complex | ATP-dependent proteolysis


Chloroplastic protein turnover | ClpP protease complex


0.44 1.28
At1g53240 0.523
malate dehydrogenase (NAD), mitochondrial -0.1 0 0 0 -0.1 0.1 0 0 0 0 0 0 -0.1 -0.4 -0.1 -0.1 -0.1 0 -0.1 0 -0.2 -0.2 0 -0.1 -0.3 0.2 0.3 0.5 0.2 0.3 0.5 0 -0.3 -0.1 0 0 0 -0.3 0.1 0 0.2 -0.1 0.2 0 0 0 0 0 0 0 0 -0.1 0.2 0.2 -0.2 0 0.1 0.1 0.1 0 0 0.2 -0.7 -0.1 -0.4 -0.2 0 0.8 -0.2 -0.1 -0.3 -0.2 -0.1 0 0.1 0 0 -0.5 0.3 0.4 0 -0.1 0.1 0 0 0 0.1 0 0 0.1 -0.2 0 0 0 -0.1 0 0 0 0.1 -0.1 0 0 0 0 0.6 At1g53240 260615_at
malate dehydrogenase (NAD), mitochondrial 10 malate dehydrogenase activity C-compound and carbohydrate metabolism | tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) gluconeogenesis | aspartate degradation II | phenylalanine degradation I | serine-isocitrate lyase pathway | formaldehyde assimilation I (serine pathway) | mixed acid fermentation | acetyl-CoA assimilation | glyoxylate cycle | TCA cycle variation VII | TCA cycle variation VIII | TCA cycle variation II | TCA cycle variation IV | TCA cycle -- aerobic respiration Citrate cycle (TCA cycle) | Pyruvate metabolism | Glyoxylate and dicarboxylate metabolism | Carbon fixation | Reductive carboxylate cycle (CO2 fixation) Intermediary Carbon Metabolism


0.75 1.58
At4g14210 0.523 PDS3 Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastd. -0.1 0 0 0 -0.1 -0.1 0 0 -0.1 0 -0.2 -0.2 -0.1 0.1 -0.2 -0.2 -0.3 -0.3 -0.2 0 -0.3 -0.3 0 0 -0.3 0.4 0.1 0.4 0.4 0.1 0.4 -0.1 -0.1 -0.2 -0.2 -0.1 0 -0.5 0 0.1 0 0.1 0 0.2 0.1 0.1 0 0.1 0 0.2 0 0.2 0 0 -0.1 0 0 0.1 0 0 0 0 -0.9 -0.1 -0.4 -0.2 -0.1 0.3 0 0 -0.7 0 0.2 0.3 0.4 0.3 0.3 -0.1 0.4 -0.1 0 0 0 0.2 0.1 0 0.1 0 0 0.1 -0.6 0.2 0.2 0.3 -0.2 0.1 -0.2 0.2 0.1 0 -0.3 0.2 0 0 0.6 At4g14210 245284_at PDS3 Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastd. 8 phytoene dehydrogenase activity | carotenoid biosynthesis biosynthesis of vitamins, cofactors, and prosthetic groups | secondary biosynthesis of derivatives of homoisopentenyl pyrophosphate | biogenesis of chloroplast carotenoid biosynthesis Biosynthesis of steroids Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Carotenoid biosynthesis
Carotenoid and abscisic acid metabolism | carotenid biosynthesis
0.75 1.57
At5g17770 0.522 ATCBR Encodes NADH-cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor. 0 0 0 -0.1 0 0 -0.2 -0.1 0 -0.2 -0.2 0 -0.2 -0.2 -0.1 -0.2 0.1 0 -0.2 -0.1 -0.1 -0.4 -0.1 -0.1 -0.3 0 0.3 0.4 0 0.3 0.4 -0.1 -0.2 0.4 0.1 0.1 0 -0.3 0 0 0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0.3 0 0.1 0.1 0 0 0 0 -1.3 0 0 0 0.1 -0.1 -0.1 -0.1 0.2 0 0 0 0 0 0 0 0.4 0.5 -0.1 0 0 0.1 0.1 0 0 0 0 0 0.1 -0.1 0 0 0.1 0 0.1 0 0 0 0.1 0 0.1 0 -0.1 At5g17770 250055_at ATCBR Encodes NADH-cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor. 9 cytochrome-b5 reductase activity | electron transport transported compounds (substrates) | electron / hydrogen transport | transport facilitation
Aminosugars metabolism



0.64 1.85
At3g24170 0.516
glutathione reductase, putative 0.1 0 0 -0.2 0.1 0 -0.1 -0.1 0 0 0.1 0 0 0.9 -0.1 -0.1 0.2 0 -0.2 0 -0.2 -0.1 -0.1 0 0 0 0 0.2 0 0 0.2 -0.3 -0.6 -0.6 0 0.1 -0.1 -0.3 0.1 -0.1 0 -0.2 0 0 0 -0.1 -0.1 -0.2 0 0 0.3 -0.1 0.3 -0.2 0.7 -0.2 0.6 0.1 0.4 0.1 0.4 0 -0.7 0 0.4 0.1 -0.1 0.6 0 -0.2 0.6 -0.1 0.1 0.1 0.1 0.1 0 -0.1 -0.5 -0.4 0 -0.7 -0.4 0 0 0 0 0 0 -0.3 -1 0 0.6 0 -1 0 -0.6 0.1 0.6 0.4 -0.7 0.1 1.3 -0.3 1.8 At3g24170 257252_at
glutathione reductase, putative 8


Glutamate metabolism | Glutathione metabolism Biosynthesis of Amino Acids and Derivatives | Glutathione metabolism


1.33 2.95
At2g48130 0.515
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein 0 0 0 -0.2 -0.1 -0.1 0 0.2 0 -0.1 -0.2 0 0.1 1.2 -0.2 -0.3 -0.1 0 -0.1 -0.2 0.1 0.1 -0.1 0 0 0 0 0 0 0 0 -0.1 -0.1 -0.5 0 0.4 0.4 0 0 0.4 0 0.2 0.3 0.4 -0.4 0.2 0 0.5 0.3 0.4 0.1 0.5 0.6 0 -1.1 0.1 0.9 0.1 0.7 0.5 0.7 0.1 -3.6 -0.3 -0.8 -0.1 -0.7 2.5 -0.3 -0.9 0 -0.3 0.2 0 0.1 0 0.2 -0.3 0 0 0 0 0 0 0 0 0 0 0 -0.3 -0.8 -0.5 0.3 -0.1 -0.5 0.1 0 -0.4 0.1 0.1 0.1 -0.1 0.5 0 0 At2g48130 262349_at
protease inhibitor/seed storage/lipid transfer protein (LTP) family protein 2




Miscellaneous acyl lipid metabolism

1.31 6.23
At2g02050 0.514
similar to NADH-ubiquinone oxidoreductase B18 subunit 0 0 0 0 0 0 0 0 0 0.1 0 -0.1 0 -0.2 0 0 0 0.1 0 0 0 0 -0.1 0 -0.1 0 0 0 0 0 0 0 -0.2 0 -0.1 0 0 0 0 0.2 0 0 0 0.1 0 0.1 0.1 0.1 -0.1 0.2 0 0.1 0 0 0 0 0 0.1 0.1 0.1 -0.1 0 -1.1 -0.2 -0.2 -0.1 0.1 0.1 0 0 0.2 0 0.2 -0.1 0 0 0 0 0.2 0.1 0 -0.1 0 0 0 0 0.1 0 0.1 0 0 0 -0.2 -0.1 0 0 0 0 0 -0.1 0 0 0 0.2 0.2 At2g02050 265219_at
similar to NADH-ubiquinone oxidoreductase B18 subunit 2

aerobic respiration -- electron donors reaction list Oxidative phosphorylation



0.39 1.39
At4g35090 0.514 CAT2 Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. -0.3 0.1 0.1 0 -0.2 -0.1 -0.1 -0.1 0 -0.1 -0.3 -0.1 0.1 0.1 -0.1 -0.3 -0.1 -0.2 -0.3 0 -0.2 -0.4 -0.1 -0.7 -1.1 0 0.1 0.2 0 0.1 0.2 0 -0.5 -0.9 0.2 0.3 0 -0.6 0.1 0 0.2 0.2 0.1 0 0.2 0 0.1 0.3 0.4 0.3 0.1 0 0.4 0.4 -0.1 0.1 0 0.2 0 0.1 0 0 -1.3 -0.1 -0.4 0 0 0 0.4 0.5 0.1 0.1 0 0.3 0.2 -0.1 0.1 0.5 -0.5 -0.8 -0.4 -0.6 -0.2 0.2 0.2 0.1 0.3 0 0.1 0 -0.4 0.2 0.6 0.2 -0.5 0.2 0 0 0.4 0.4 -0.3 0.5 0 0.3 1.3 At4g35090 253174_at CAT2 Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. 4 hydrogen peroxide catabolism detoxification | detoxification by modification removal of superoxide radicals Methane metabolism | Tryptophan metabolism



1.13 2.72
At5g08300 0.514
succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative 0.2 0 0 0 0.1 0 0 0 0 0 0 -0.2 -0.1 -0.4 -0.1 -0.1 0 -0.1 0 0 -0.3 -0.2 -0.1 -0.1 -0.1 0.2 0.3 0.5 0.2 0.3 0.5 0 -0.2 -0.1 0 0 0 -0.4 0.1 0 0 -0.3 0 -0.1 0 -0.2 0 -0.2 -0.2 0 0 -0.2 0 0 0.3 -0.1 0.2 0.1 0.1 -0.1 -0.2 0 -0.4 -0.1 0 -0.1 0.3 0.7 -0.1 -0.1 0.5 -0.3 -0.1 0 -0.3 0 0 0 0.3 0 0.1 0 0.2 0 -0.1 0 0 0 0 0 0 -0.1 -0.1 -0.1 0 0 0 -0.1 0 -0.2 0 0 0.3 0.5 1.4 At5g08300 246035_at
succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative 4
C-compound and carbohydrate metabolism | tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)
Citrate cycle (TCA cycle) | Propanoate metabolism Intermediary Carbon Metabolism


0.80 1.93
At3g27240 0.513
cytochrome c1, putative 0.1 0 -0.1 0 0 0 -0.1 0 0 -0.1 -0.1 -0.2 -0.1 0 0 -0.1 0 0 0 0 -0.1 -0.1 -0.1 0 0 0 -0.1 0 0 -0.1 0 0 -0.1 -0.2 0 0 0 -0.3 0.1 0 0 0 0.2 0 0 0 0 0 0.1 0.1 0.1 0 0 0.2 -0.1 0.1 0 0.1 0.2 0.1 0.1 0 -0.3 0 -0.1 0 0.3 0.4 0.2 0.1 0.4 0 0 0 0 0 0 0.1 0.3 0.3 0.1 -0.2 -0.1 0 0 0 0 0 0 0 -0.2 -0.1 0.1 -0.1 -0.2 -0.1 0 0 0.1 -0.1 0 -0.1 0.1 -0.1 0.3 At3g27240 257148_at
cytochrome c1, putative 4


Oxidative phosphorylation



0.54 0.87
At2g22360 0.511
DNAJ heat shock family protein, similar to Chaperone protein dnaJ from Listeria monocytogenes 0 0 -0.1 -0.1 0 0 0 0.5 -0.2 -0.3 0 -0.3 -0.2 -0.2 -0.1 -0.3 0.1 -0.3 -0.3 0.3 -0.3 -0.5 0 -0.1 0 0.5 0.5 0.5 0.5 0.5 0.5 0 0 0 -0.1 0 0 -0.6 0.1 -0.1 0 -0.1 0 0.2 0 -0.1 0 0 -0.3 0 0 -0.2 0.3 -0.1 -0.2 0.2 0.2 0.2 0.4 0.1 0 0.2 -0.9 0 -0.6 -0.1 0.2 0.8 -0.3 -0.1 0 0.1 0 0 -0.1 0 0 0 0 -0.7 0.1 -0.2 0 0 -0.1 0.1 0 0 -0.1 0 -0.6 -0.3 0.5 -0.3 -0.1 0 0 0 0.3 -0.3 0 -0.1 0 1 2.2 At2g22360 264002_at
DNAJ heat shock family protein, similar to Chaperone protein dnaJ from Listeria monocytogenes 2


Folding, Sorting and Degradation | Protein folding and associated processing



1.04 3.20
At5g11770 0.511
NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial, -0.1 0 0 0 -0.1 0 0 -0.1 0 0 -0.1 0 0 0 -0.1 0 0 -0.1 -0.1 -0.2 0 -0.1 -0.1 0 0 0 0 0 0 0 0 -0.1 -0.3 -0.4 0 0 0 -0.2 0 0 0.1 0 0 0 0 0 0 0.1 0 0.1 -0.1 0 0 0.2 0 0 0 0 -0.1 0 0 0 -0.9 -0.1 -0.4 -0.1 0.1 0.3 0.1 0 0.5 0.5 -0.1 0.2 0 0 0.1 0 -0.3 0.1 0.1 0 0 0.1 0 0 0 0 0.1 0 0.2 0 0.1 -0.1 0 0 0.2 0 0.1 0 0.2 -0.1 0 0.1 0.5 At5g11770 250334_at
NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial, 6
transported compounds (substrates) | electron / hydrogen transport | transport facilitation aerobic respiration -- electron donors reaction list Oxidative phosphorylation



0.47 1.52
At1g80600 0.509
acetylornithine aminotransferase, mitochondrial, putative / acetylornithine transaminase, putative 0.1 0 0 0.1 0 0 0 0 0.1 0.1 0 0 0 0 -0.1 -0.2 0.1 -0.2 -0.2 0.1 -0.2 -0.4 0 0 0 -0.1 0.1 -0.2 -0.1 0.1 -0.2 0 -0.1 -0.2 0 0 0.1 -0.2 0.1 0.1 0.2 0.1 0.1 0.1 0 0 0 0.1 0 0.1 0 0 0 0.1 0 0 0.2 0.1 0 0 0 0 -0.9 -0.2 -0.5 -0.3 0 0.6 -0.3 -0.3 -0.3 0 0 -0.1 -0.2 0.2 0 -0.4 0.1 0.1 0.2 0 0.1 0 0.1 0.1 0 0.2 0 -0.1 -0.1 0 0.1 0.1 0 0 0 0 0.2 0.1 0.1 0 0.1 0.2 0.5 At1g80600 260286_at
acetylornithine aminotransferase, mitochondrial, putative / acetylornithine transaminase, putative 4

arginine biosynthesis I | arginine degradation VIII Urea cycle and metabolism of amino groups Biosynthesis of Amino Acids and Derivatives | aspartate/ornithin cycle / nitric oxid from glutamate


0.61 1.58
At5g11520 0.508 ASP3 Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves. -0.1 0 0 0 0.1 0 -0.2 -0.3 0 0 0 -0.1 -0.1 0.7 -0.3 -0.3 0 -0.4 -0.3 -0.1 -0.4 -0.5 -0.1 -0.4 -1.3 0 0.1 0.3 0 0.1 0.3 0 -0.1 -0.1 0.1 0.2 0 0 0 0 0 0.2 -0.1 0 -0.2 0 -0.2 0.1 -0.2 0.2 0 0 -0.1 -0.2 0.4 -0.3 0.4 -0.1 0 -0.3 0.2 -0.3 -1.1 -0.3 0 -0.3 0 0.1 0.4 0.5 0.5 0.1 0 0.1 0 0 0.1 0.7 0.1 0 0.1 -0.1 0 0 0 -0.1 0 0.1 0 0 0.4 0 0 0 0.2 0 0.1 -0.1 0 0 0.4 0 0.6 -0.2 1.1 At5g11520 250385_at ASP3 Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves. 10 aspartate transaminase activity | leaf senescence | nitrogen compound metabolism amino acid metabolism | metabolism of the aspartate family | nitrogen and sulfur biogenesis of chloroplast asparagine biosynthesis I | aspartate biosynthesis and degradation | asparagine degradation I | aspartate degradation I | aspartate degradation II | glutamine degradation III Carbon fixation | Glutamate metabolism | Alanine and aspartate metabolism | Cysteine metabolism | Arginine and proline metabolism | Tyrosine metabolism | Phenylalanine, tyrosine and tryptophan biosynthesis | Alkaloid biosynthesis I | Novobiocin biosynthesis | Phenylalanine metabolism Gluconeogenesis from lipids in seeds


0.93 2.56
At2g23930 0.506
similar to small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) from Homo sapiens 0.2 0 -0.1 0 0.1 0 0 0.3 0 0 0 0 0 -0.3 -0.1 -0.1 0.1 0 -0.1 0 -0.2 -0.2 0 0 0 0 0.2 0.7 0 0.2 0.7 -0.1 -0.2 0.3 -0.1 0 0 0 0.1 0 0 -0.4 0 0 0 -0.3 0 -0.1 -0.6 0 -0.1 -0.3 -0.1 -0.2 -0.1 0 0 0.1 0.1 0 -0.2 0 -2 0.1 0 0.1 0 0.4 -0.3 -0.2 0.2 -0.5 0.2 -0.1 0.4 0 0.1 -0.1 0.4 0.6 0.1 -0.2 0.3 0 -0.2 0.1 0 0 0 0 0 0 -0.1 0 0.1 0 0 0.1 0 0 0.1 0.1 0.3 0.2 1 At2g23930 266579_at
similar to small nuclear ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG) from Homo sapiens 2


Transcription | Other and unclassified family transcriptional regulators



0.81 3.12
At5g40650 0.505 SDH2-2 One of three isoforms of the iron-sulfer component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complexII. The product of the nuclear encoded gene is imported into the mitochondrion. 0 0 0 0.2 0 0 0.1 -0.2 0 0.3 -0.1 0 0 0 0 0 0 0 0 0 -0.2 0.1 -0.1 -0.5 -0.2 0.2 0.5 0.8 0.2 0.5 0.8 0 -0.1 0 0 0.1 0 -0.3 0 0.1 0 0 0 0 -0.2 -0.1 0.1 0 0 0.1 -0.2 0 -0.1 0 0 -0.1 -0.1 -0.2 0 0 -0.1 0 -0.7 0 -0.2 0 0.1 0.1 0 -0.1 0.5 -0.1 0 0.1 -0.2 0 0 0.1 0.4 0.6 0 -0.3 0 0 -0.1 0 0 0 0 0 -0.2 0 -0.1 -0.2 -0.2 0 -0.1 0 -0.1 0 -0.1 0 0.1 0.1 0.5 At5g40650 249343_at SDH2-2 One of three isoforms of the iron-sulfer component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complexII. The product of the nuclear encoded gene is imported into the mitochondrion. 4
C-compound, carbohydrate catabolism | tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) mixed acid fermentation | acetyl-CoA assimilation | aerobic respiration -- electron donors reaction list | TCA cycle variation VII | TCA cycle variation VIII | TCA cycle variation IV | TCA cycle -- aerobic respiration Citrate cycle (TCA cycle) | Oxidative phosphorylation Intermediary Carbon Metabolism | Gluconeogenesis from lipids in seeds


0.80 1.59
At3g21240 0.504 4CL2 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it does NOT convert ferulate. -0.3 0 0.1 -0.4 -0.9 0.3 0 0.2 0 0 0.1 0.2 -0.4 0 0.1 0.3 0.7 0.1 0 0 0.3 0 -0.2 0 0 0 0 0 0 0 0 0 0.1 -0.2 -0.2 -0.3 -0.3 -1 -0.1 -0.2 0.1 0.1 0 0 -0.1 -0.4 0.1 -0.1 0.2 -0.1 0.2 -0.1 0.5 0 0.8 0.3 0.4 0.1 0.1 0.4 -0.4 -0.1 -1.9 0 -0.3 -0.2 -0.2 0.6 0 0.3 0.2 0.8 0 0 -0.1 0 0 -0.2 -0.4 -0.5 0 0 0 0 0 0 0 0 0 0 0 0 0.3 0 0 0 0.3 0 0.2 0 0 -0.3 0 0 0 At3g21240 258047_at 4CL2 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it does NOT convert ferulate. 10 4-coumarate-CoA ligase activity | response to UV | response to pathogenic fungi | response to wounding | phenylpropanoid metabolism
suberin biosynthesis | lignin biosynthesis | flavonoid biosynthesis Stilbene, coumarine and lignin biosynthesis Phenylpropanoid Metabolism | core phenylpropanoid metabolism
Phenylpropanoid pathway Acyl activating enzymes , CoA ligases, clade IV, 4-coumarate-CoA ligase 0.95 2.74
At4g35260 0.504 IDH1 NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1) 0.2 0 -0.1 0 0 0 0 0 0 0.1 0.2 0 0 0 0 0 0.1 0 0.1 0 0 0 0.1 0 0 0.2 0.1 0.6 0.2 0.1 0.6 0 -0.2 -0.2 0.1 0 0 -0.3 -0.1 -0.1 0 0 -0.1 -0.1 -0.2 0 -0.1 -0.1 -0.1 0 -0.1 0 0 -0.1 -0.1 -0.2 0 0 -0.3 -0.1 0 0 -1.2 0 -0.3 -0.2 0 0.6 -0.3 -0.1 0.1 0.1 0.1 0 0 0.1 0.1 -0.2 0.2 -0.1 0.4 0.2 0.2 0 0.1 0 0 0.1 0.1 0 -0.1 -0.1 0 -0.1 0 0 0 0 0.1 0 0 0 0.2 0 0.3 At4g35260 253196_at IDH1 NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1) 4
C-compound and carbohydrate metabolism | glycolysis and gluconeogenesis | tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) leucine biosynthesis | TCA cycle variation VIII | TCA cycle variation IV | TCA cycle -- aerobic respiration Citrate cycle (TCA cycle) Intermediary Carbon Metabolism


0.54 1.86
At5g17220 0.504 ATGSTF12 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. -2.3 0 -0.3 0.1 -0.7 -0.2 0.3 0.5 -0.2 0.1 -0.3 0 0 0.2 -0.4 0.3 1.2 -0.1 -0.3 -0.3 -0.1 0.4 0 0 0 1 0.5 1.1 1 0.5 1.1 0 0 1.5 -0.3 0.1 -0.6 -1 0.2 -0.1 -0.3 -0.6 0 -0.3 0 -0.2 0 -0.2 -0.1 0.5 -0.1 -0.3 0.5 -0.1 -0.4 0.6 -0.2 0.5 0 0.2 -0.1 0.5 -1.8 -1.8 -1.8 -1.8 -2.1 0 -2.1 -2.1 1.6 0 0 0 0 0.8 0 -2.1 0 -0.5 -1.1 -0.1 0 0 -0.2 0.2 0.6 0.7 0 0 0 0 3 0 0 0 0 0 2.3 0 0 0 0 0 3.6 At5g17220 250083_at ATGSTF12 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. 8 toxin catabolism


Phenylpropanoid Metabolism | Sequestration of phenylpropanoids (cytosol --> vacuole) | Biosynthesis of Amino Acids and Derivatives | Glutathione metabolism

Glutathione S-transferase, Phi family 3.09 6.00
At1g10960 0.503
Strong similarity to FERREDOXIN PRECURSOR from Arabidopsis thaliana -0.1 0 0.1 0.1 -0.1 0.1 0.2 -0.2 0 0.1 -0.4 0 -0.1 -0.3 -0.1 -0.2 -0.4 -0.2 -0.1 -0.4 -0.2 -0.3 -0.3 -0.2 -0.3 0.3 0.5 0.8 0.3 0.5 0.8 0 -0.3 0 0 0.1 0 -0.4 0 0.1 0.1 0.3 0 0 0.1 0 0 0.1 0 0.2 0 0 0.2 0.3 -0.3 -0.1 0 0 0 0.2 0 -0.1 -0.9 -0.2 -0.4 -0.1 0.1 0 0 0.1 0 0.2 0.1 0.1 0.2 0.2 0.3 0 -0.1 0.1 0 -0.2 -0.1 0.2 0.1 0 0.1 0 0 -0.9 -1.5 -0.1 0.9 0.1 -1.1 -0.1 -0.3 -0.2 0.6 0.7 -1.1 0.9 0 0.1 1.1 At1g10960 260481_at
Strong similarity to FERREDOXIN PRECURSOR from Arabidopsis thaliana 6


Photosynthesis Photosystems | Ferredoxin


1.18 2.65
At2g27020 0.503 PAG1 20S proteasome alpha subunit G (PAG1) (PRC8) 0 0 -0.1 0 -0.1 -0.1 0 0 0 0 0 -0.1 0 -0.3 -0.1 0 -0.1 -0.2 -0.1 0 -0.2 -0.1 -0.1 0 -0.1 0.1 0.4 0.3 0.1 0.4 0.3 -0.1 -0.3 -0.4 -0.1 0 0 -0.5 0.3 0.1 0.2 -0.1 0.2 0 0 -0.1 0 0 -0.2 0 0 -0.1 0.1 -0.1 0 -0.1 0 0.5 0 0 -0.1 0.1 -0.9 -0.1 -0.1 -0.1 0.4 0.4 0 0 0 -0.3 0 -0.1 0 0 0.1 0 0.5 0.3 0.1 0.1 0 0 0 0 0 0 0 -0.1 0.2 0 -0.1 -0.1 0 0 -0.2 -0.1 0 -0.2 0.1 -0.2 0.2 0.4 1.6 At2g27020 266312_at PAG1 20S proteasome alpha subunit G (PAG1) (PRC8) 6 proteasome core complex (sensu Eukaryota) | ubiquitin-dependent protein catabolism

Folding, Sorting and Degradation | Proteasome



0.79 2.49
At3g10050 0.502 OMR1 threonine ammonia-lyase / threonine dehydratase / threonine deaminase 0.4 0 -0.2 0 0 0 0 0.1 0 0 -0.2 0 -0.2 -0.8 0 0 0.1 0 0 0 0 0 -0.1 0.1 0 0 0 0 0 0 0 -0.1 -0.2 0 -0.1 0 -0.1 -0.5 0.1 0 0 -0.2 0.2 0 0.1 -0.2 0.2 0 -0.2 0.1 0.2 0 0.2 0.2 0.4 0.1 0.2 0.2 0.3 0 0.3 0.1 -1.2 -0.1 0.3 -0.1 0.2 0.2 0.1 0.3 -0.1 -0.1 -0.1 -0.1 -0.2 0 -0.1 0.1 0.5 0.5 0.4 0 0.2 0 0 0 -0.1 0 0 -0.1 -0.7 -0.1 0 -0.1 -0.4 -0.1 -0.6 -0.1 0 -0.1 -0.7 -0.1 -0.2 0.6 2.4 At3g10050 258884_at OMR1 threonine ammonia-lyase / threonine dehydratase / threonine deaminase 8

cysteine biosynthesis II | threonine biosynthesis from homoserine | sulfate assimilation III Glycine, serine and threonine metabolism Biosynthesis of Amino Acids and Derivatives | Branched-chain amino acids from aspartate


0.94 3.73
At5g04800 0.502 RPS17D 40S ribosomal protein S17 (RPS17D) 0.1 0 0 0.1 0 0 0 -0.1 0 0 -0.1 0 0 -0.2 -0.1 -0.1 0 0 -0.1 -0.1 -0.1 -0.1 -0.1 -0.3 -0.5 0 0.1 0 0 0.1 0 0 -0.3 0.1 0.2 0.1 0.1 -0.1 0.1 0.1 0.1 0 0.1 0.1 0 0 0 0.2 -0.1 0.1 -0.1 0 0.3 0.1 0 0 0.1 0.1 0.1 0.1 0 0 -0.9 0 -0.1 0.1 0.2 0.1 -0.1 0 0 -0.4 -0.1 0.1 -0.1 -0.3 0.1 0 0.4 0.5 0.1 -0.2 0.1 0.1 0 0.1 0 0 -0.1 0 -0.1 0 -0.1 -0.1 -0.1 0 0 0 0 0 0 0.1 0 0 0.2 At5g04800 250862_s_at RPS17D 40S ribosomal protein S17 (RPS17D) 6


Ribosome



0.57 1.48