| Co-Expression Analysis of: | CYP75B1, F3'H (At5g07990) | Institut de Biologie Moléculaire des Plantes |
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| ________________________ | _____________________________________________ | CYPedia Home | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Hormones etc. Data Set | save / view heatmap as: | OpenOffice Table | annotation details for co-expressed genes can be found to the right of the heatmap | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MS Excel Table | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| save / view all data as: | Tab delimited Table | For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) | magnitude of change [log2(treatment/control)] | 0 | 0.3 | 0.6 | 0.9 | 1.2 | 1.5 | 1.8 | 2.1 | 2.4 | 2.7 | >2.99 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| greater than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| less than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Locus | r-value | Name | Description | ethylene, 3h, petiole (13) | mock, 30min, seedling (110) | IAA, 30min, seedling (110) | IAA, 1h, seedling (110) | IAA, 3h, seedling (110) | zeatin, 30min, seedling (110) | zeatin, 1h, seedling (110) | zeatin, 3h, seedling (110) | GA3, 30min, seedling (110) | GA3, 1h, seedling (110) | GA3, 3h, seedling (110) | ABA, 30min, seedling (110) | ABA, 1h, seedling (110) | ABA, 3h, seedling (110) | MJ, 30min, seedling (110) | MJ, 1h, seedling (110) | MJ, 3h, seedling (110) | ACC, 30min, seedling (110) | ACC, 1h, seedling (110) | ACC, 3h, seedling (110) | BL, 30min, seedling (110) | BL, 1h, seedling (110) | BL, 3h, seedling (110) | ABA, 3 uM, imbided seed (116) | ABA, 30 uM, imbided seed (116) | GA, 3h, imbibed seed (119) | GA, 6h, imbibed seed (119) | GA, 9h, imbibed seed (119) | GA, 3h, imbibed seed (134) | GA, 6h, imbibed seed (134) | GA, 9h, imbibed seed (134) | GA, 30min, whole plant (99) | GA, 60min, whole plant (99) | GA, 3h, whole plant (99) | IAA, 0.1uM, 1h, seedling (144) | IAA, 0.1uM, 3h, seedling (144) | IAA, 1uM, 1h, seedling (144) | IAA, 1uM, 3h, seedling (144) | ppi, 3h, seedling (113) | ppi, 12h, seedling (113) | uni, 3h, seedling (113) | uni, 12h, seedling (113) | brz220, 3h, seedling (113) | brz220, 12h, seedling (113) | brz91, 3h, seedling (113) | brz91, 12h, seedling (113) | pac, 3h, seedling (113) | pac, 12h, seedling (113) | px, 3h, seedling (113) | px, 12h, seedling (113) | pno8, 3h, seedling (113) | pno8, 12h, seedling (113) | ibup, 3h, seedling (113) | B9, 3h, seedling (113) | AgNO3, 3h, seedling (113) | AVG, 3h, seedling (113) | Sal, 3h, seedling (113) | MG132, 3h, seedling (113) | 246T, 3h, seedling (113) | PCIB, 3h, seedling (113) | TIBA, 3h, seedling (113) | NPA, 3h, seedling (113) | CHX, 3h, seedling (113) | Colm, 3h, seedling (113) | ColPNO8, 3h, seedling (113) | ColBrz, 3h, seedling (113) | glucose, 8h, seedling (14) | sucrose, 8h, seedling (15) | deoxyglucose, 8h_seedling (14) | methylglucose, 8h, seedling (14) | K depleted, whole rosette (97) | K depleted, root (97) | Sulfate depleted, 2h, root (112) | Sulfate depleted, 4h, root (112) | Sulfate depleted, 8h, root (112) | Sulfate depleted, 12h, root (112) | Sulfate depleted, 24h, root (112) | mannitol, 8h, seedling (14) | CO2, 1000ppm, guard cell enriched (11) | CO2, 1000ppm, mature leaf (11) | CO2, high light, whole rosette (95) | CO2, medium light, whole rosette (95) | CO2, low light, whole rosette (95) | CO2, 2h, juvenile leaf (151) | CO2, 4h, juvenile leaf (151) | CO2, 6h, juvenile leaf (151) | CO2, 12h, juvenile leaf (151) | CO2, 24h, juvenile leaf (151) | CO2, 48h, juvenile leaf (151) | dark, 45min, seedling (109) | dark, 4h, seedling (109) | far red, 45min, seedling (109) | far red, 4h, seedling (109) | red pulse1, seedling (109) | red pulse2, seedling (109) | red, 45min, seedling (109) | red, 4h, seedling (109) | blue, 45min, seedling (109) | blue, 4h, seedling (109) | UV-A pulse1, seedling (109) | UV-A pulse2, seedling (109) | UV-AB pulse1, seedling (109) | UV-AB pulse2, seedling (109) | UV-A, 18h, mature leaf (72) | UV-B, 18h, mature leaf (72) | Locus | Probeset | Name | Description | Annotation score | GO.keywords | FunCat keywords | AraCyc annotations | KEGG annotations | BioPath annotations | AcylLipid category | Literature annotations | Gene family | 90% quantile of DE | max. DE |
| At5g07990 | 1.000 | TT7, CYP75B1 | flavonoid 3'-monooxygenase / flavonoid 3'-hydroxylase (F3'H) / cytochrome P450 75B1 (CYP75B1) / transparent testa 7 protein (TT7) | -0.42 | 0.09 | -0.02 | -0.06 | -0.84 | -0.05 | -0.37 | 0.05 | -0.07 | -0.07 | -0.38 | 0.23 | 0.41 | -0.05 | -0.21 | 0 | 0.7 | -0.13 | 0.38 | -0.69 | 0.11 | 0.3 | 0.03 | 0.28 | 0.89 | -0.18 | -0.31 | -0.63 | -0.18 | -0.31 | -0.63 | 0.54 | 0.12 | 1.81 | -0.01 | -0.01 | -0.01 | -0.6 | 0.36 | 0.07 | -0.07 | -0.1 | 0.1 | 0.19 | 0.2 | 0.19 | 0.12 | -0.24 | 0.48 | 0.12 | -0.13 | -0.38 | 0.54 | -0.2 | -0.86 | 0.38 | -0.27 | 0.55 | 0.28 | -0.14 | -0.14 | 0.1 | -0.62 | -0.35 | -0.51 | -0.53 | -0.26 | 0.09 | -0.35 | -0.46 | 0.02 | 0.12 | 0.07 | -0.08 | 0.2 | 0.3 | 0.31 | -0.98 | -0.3 | 0.09 | -0.77 | 0.49 | 0.09 | -0.05 | 0.07 | 0.13 | 0.4 | 0.75 | 0.15 | -0.21 | -0.07 | -0.14 | 0.57 | 0.11 | -0.34 | 0.02 | 0.2 | 0.12 | 0.33 | -0.16 | -0.14 | -0.03 | 0.3 | 0.06 | 0.45 | At5g07990 | 250558_at | TT7, CYP75B1 | flavonoid 3'-monooxygenase / flavonoid 3'-hydroxylase (F3'H) / cytochrome P450 75B1 (CYP75B1) / transparent testa 7 protein (TT7) | 10 | flavonoid 3'-monooxygenase activity | response to UV | flavonoid biosynthesis | secondary metabolism | anthocyanin biosynthesis | flavonol biosynthesis | Flavonoid biosynthesis | flavonoid, anthocyanin, and proanthocyanidin biosynthesis | cytochrome P450 family, 3’-hydroxylase for narigenin, dihydrokaempferol, flavonoid biosynthesis | 1.19 | 2.79 | ||
| At3g51240 | 0.586 | F3H | Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. | -0.4 | 0.07 | 0.02 | -0.07 | -0.77 | -0.31 | -0.18 | 0.33 | -0.11 | -0.11 | -0.3 | -0.14 | 0.38 | 0.81 | -0.36 | 0.03 | 0.28 | -0.51 | -0.28 | -0.49 | -0.22 | 0.08 | 0.11 | 0.21 | 0.53 | -0.01 | -0.23 | -0.43 | -0.01 | -0.23 | -0.43 | 0.18 | 0.11 | 2.27 | 0.31 | -0.07 | -0.26 | -2.02 | 0.62 | 0.26 | 0.54 | 0.07 | 0.62 | 0.19 | 0.34 | 0.02 | 0.07 | -0.2 | 0.28 | 0.39 | 0.23 | -0.44 | 0.96 | 0.1 | -2.1 | 0.2 | -0.18 | 0.57 | 0.55 | 0.16 | -0.2 | 0.26 | -2.25 | -0.31 | -1.09 | -0.64 | -0.57 | 2.35 | -0.78 | -0.91 | 0.84 | -0.48 | 0.18 | 0.04 | 0.26 | 0.11 | 0.18 | -1.2 | 0.39 | -0.13 | -1.29 | -0.34 | -0.74 | 0.11 | 0.02 | 0.11 | 0.5 | 0.24 | -0.11 | -2.17 | -2.85 | 0.14 | 2.6 | -0.2 | -1.82 | -0.19 | -1.03 | 0.13 | 1.42 | 0.68 | -1.4 | 1 | 1.92 | 1.22 | 5.01 | At3g51240 | 252123_at | F3H | Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. | 10 | flavonoid biosynthesis | naringenin 3-dioxygenase activity | secondary metabolism | flavonoid biosynthesis | Flavonoid biosynthesis | Phenylpropanoid Metabolism | Flavonoid and anthocyanin metabolism | flavonoid, anthocyanin, and proanthocyanidin biosynthesis | 3.12 | 7.86 | ||
| At1g65060 | 0.568 | 4CL3 | encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. | 0.17 | 0.17 | 0.27 | -0.11 | -1.11 | 0.07 | 0.12 | 0.47 | -0.12 | -0.23 | -0.95 | -0.05 | -0.25 | -0.88 | -0.17 | -0.2 | 0.34 | -0.21 | -0.27 | -0.77 | -0.32 | -0.18 | 0.12 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 1.75 | 0.78 | -0.01 | 0.1 | -1.5 | 0.46 | 0.15 | 0.22 | 0.2 | 0.56 | 0.33 | 0.24 | 0.05 | -0.11 | 0.02 | -0.6 | 0.22 | 0.3 | -0.06 | 0.48 | 0.04 | -2.35 | 0.23 | -0.47 | 0.37 | 0.34 | 0.05 | -0.35 | 0.1 | -2.35 | -0.45 | -1.47 | -0.61 | -0.03 | 0.17 | -0.42 | -2.24 | -0.48 | 0.17 | 0.4 | 0.64 | 0.42 | 0.6 | 0.33 | -2.24 | 0.17 | 0.17 | -0.08 | -2.14 | 0.17 | 0.32 | 0.33 | 0.18 | 0.35 | 0.24 | 0.39 | 0.17 | 0.17 | 0.17 | 2.31 | 0.17 | 0.17 | 0.17 | 0.17 | 0.17 | 0.66 | 0.17 | 0.17 | 0.17 | 0.7 | 0.17 | 2.52 | At1g65060 | 261907_at | 4CL3 | encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. | 10 | 4-coumarate-CoA ligase activity | response to UV | phenylpropanoid metabolism | suberin biosynthesis | lignin biosynthesis | flavonoid biosynthesis | Stilbene, coumarine and lignin biosynthesis | Phenylpropanoid Metabolism | core phenylpropanoid metabolism | flavonoid, anthocyanin, and proanthocyanidin biosynthesis | general phenylpropanoid pathway | Phenylpropanoid pathway | Acyl activating enzymes , CoA ligases, clade IV, 4-coumarate-CoA ligase | 2.15 | 4.88 | ||
| At5g48880 | 0.546 | PKT1, PKT2 | Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. Complements the kat2 (3-ketoacyl-CoA thiolase ) mutant phenotype. | -0.02 | 0.02 | 0.01 | -0.2 | -0.21 | -0.2 | -0.31 | 0.22 | -0.05 | -0.11 | -0.5 | -0.04 | 0.01 | -0.24 | 0.09 | 0.66 | 1.5 | -0.2 | -0.09 | -0.4 | -0.08 | 0.32 | -0.06 | -0.02 | 0.34 | 0.14 | -0.09 | -0.03 | 0.14 | -0.09 | -0.03 | -0.31 | -0.07 | 0.49 | 0 | 0.03 | -0.07 | -0.84 | 0.48 | -0.18 | 0.1 | -0.46 | 0.22 | 0.19 | 0.41 | -0.11 | -0.32 | -0.06 | 0.21 | -0.02 | 0.42 | -0.23 | 0.72 | 0.28 | -1.18 | 0.3 | -0.16 | 0.32 | 0.06 | 0.04 | -0.31 | 0.45 | -1.59 | -0.1 | -0.66 | -0.37 | -0.65 | 2.08 | -0.64 | -0.73 | -0.21 | 0.02 | 0.22 | -0.06 | 0.52 | 0.45 | 0.36 | -1.09 | 0.42 | -0.96 | -0.26 | -0.32 | -0.53 | 0 | -0.26 | 0.22 | 0.71 | 0.13 | -0.08 | 0.02 | -0.74 | 0.02 | 2.11 | 0.02 | -0.74 | -0.12 | -0.74 | 0.02 | 0.92 | 0.02 | -0.74 | 0.02 | 0.79 | 0.18 | 1.52 | At5g48880 | 248625_at | PKT1, PKT2 | Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. Complements the kat2 (3-ketoacyl-CoA thiolase ) mutant phenotype. | 10 | acetyl-CoA C-acyltransferase activity | fatty acid oxidation | isoleucine degradation III | isoleucine degradation I | fatty acid oxidation pathway | Fatty acid biosynthesis (path 2) | Fatty acid metabolism | Bile acid biosynthesis | Valine, leucine and isoleucine degradation | Benzoate degradation via hydroxylation | Gluconeogenesis from lipids in seeds | fatty acid beta oxidation complex | Degradation of storage lipids and straight fatty acids | 1.51 | 3.70 | |||
| At5g17220 | 0.530 | ATGSTF12 | Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. | -2.33 | 0.09 | -0.36 | 0.1 | -0.72 | -0.28 | 0.37 | 0.56 | -0.22 | 0.18 | -0.38 | -0.07 | 0.09 | 0.26 | -0.44 | 0.36 | 1.23 | -0.18 | -0.39 | -0.34 | -0.15 | 0.44 | -0.06 | 0.09 | 0.09 | 1.06 | 0.56 | 1.11 | 1.06 | 0.56 | 1.11 | 0.09 | 0.09 | 1.58 | -0.35 | 0.1 | -0.6 | -1.01 | 0.27 | -0.16 | -0.39 | -0.62 | -0.02 | -0.33 | 0.06 | -0.21 | -0.03 | -0.23 | -0.15 | 0.5 | -0.16 | -0.34 | 0.59 | -0.16 | -0.43 | 0.65 | -0.21 | 0.56 | -0.01 | 0.28 | -0.17 | 0.52 | -1.88 | -1.88 | -1.88 | -1.88 | -2.19 | 0.09 | -2.19 | -2.19 | 1.64 | 0.09 | 0.09 | 0.09 | 0.09 | 0.85 | 0.09 | -2.19 | 0.09 | -0.59 | -1.15 | -0.16 | 0.09 | 0.03 | -0.22 | 0.21 | 0.64 | 0.72 | 0.01 | 0.09 | 0.09 | 0.09 | 3.09 | 0.09 | 0.09 | 0.09 | 0.09 | 0.09 | 2.36 | 0.09 | 0.09 | 0.09 | 0.09 | 0.09 | 3.68 | At5g17220 | 250083_at | ATGSTF12 | Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. | 8 | toxin catabolism | Phenylpropanoid Metabolism | Sequestration of phenylpropanoids (cytosol --> vacuole) | Biosynthesis of Amino Acids and Derivatives | Glutathione metabolism | Glutathione S-transferase, Phi family | 3.09 | 6.00 | |||||
| At3g44970 | 0.520 | CYP708A4 | cytochrome P450 family protein | 0.14 | 0.14 | 0.19 | -0.2 | -1.65 | -0.06 | 0.07 | -0.5 | 0.02 | -0.11 | -1.42 | -0.15 | 0.28 | 0.4 | 0.06 | -0.01 | 1.11 | -0.04 | -0.02 | -0.68 | 0.01 | -0.16 | 0.1 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.68 | 0.14 | 0.45 | -0.7 | -0.68 | -1.12 | 0.37 | -0.22 | 0.28 | -0.1 | 0.28 | -0.39 | 0.51 | -0.17 | 0.1 | -0.39 | 0.73 | 0.51 | -0.04 | 0.02 | 0.56 | 0.37 | -0.7 | 0.95 | -0.31 | 0.47 | 0.37 | 0.41 | -0.11 | 0.6 | -1.04 | -1.05 | -2.59 | -1.14 | -0.51 | 0.14 | -0.31 | -0.33 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | -0.4 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.6 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.67 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | 0.14 | At3g44970 | 252629_at | CYP708A4 | cytochrome P450 family protein | 1 | detoxification | detoxification involving cytochrome P450 | cytochrome P450 family | 1.65 | 3.70 | ||||||
| page created by Juergen Ehlting | 04/20/06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||