Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP77A4 (At5g04660)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are co-expressed pathways in the organ data set only
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP77A4 (At5g04660)
max. difference between log2-ratios:				3.8
max. difference between log2-ratios excluding lowest and highest 5%:				2.2
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Leaf Glycerolipid Biosynthesis	BioPath	20	0.000	2	0.096
Leaf Glycerolipid Biosynthesis in Plastid	BioPath	20	0.000	2	0.005
fatty acid biosynthesis	TAIR-GO	20	0.000	2	0.000
fatty acid biosynthesis -- initial steps	AraCyc	20	0.000	2	0.000
Fatty acid biosynthesis (path 1)	KEGG	20	0.000	2	0.000
Synthesis of fatty acids in plastids	AcylLipid	20	0.000	2	0.000
Pyruvate metabolism	KEGG	16	0.000	2	0.003
Ribosome	KEGG	12	0.014	2	0.094
biotin binding	TAIR-GO	10	0.000	1	0.000
fatty acid biosynthesis	FunCat	10	0.000	1	0.000
isoprenoid biosynthesis	FunCat	10	0.000	1	0.026
lipid, fatty acid and isoprenoid biosynthesis	FunCat	10	0.000	1	0.020
lipid, fatty acid and isoprenoid metabolism	FunCat	10	0.000	1	0.012
Propanoate metabolism	KEGG	10	0.000	1	0.007
Tetracycline biosynthesis	KEGG	10	0.000	1	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP77A4 (At5g04660)
max. difference between log2-ratios:				3.6
max. difference between log2-ratios excluding lowest and highest 5%:				1.5
						Link to stress heatmap
there are no co-expressed genes with more than 6 annotation points
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP77A4 (At5g04660)
max. difference between log2-ratios:				1.8
max. difference between log2-ratios excluding lowest and highest 5%:				1.0
						Link to hormones etc. heatmap
there are no co-expressed genes with r>0.5
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP77A4 (At5g04660)
max. difference between log2-ratios:				3.3
max. difference between log2-ratios excluding lowest and highest 5%:				1.6
						Link to mutants heatmap
there are no co-expressed genes with r>0.5
page created by Juergen Ehlting	05/12/06