Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP77A4 (At5g04660) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are co-expressed pathways in the organ data set only



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP77A4 (At5g04660)







max. difference between log2-ratios: 3.8











max. difference between log2-ratios excluding lowest and highest 5%: 2.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Leaf Glycerolipid Biosynthesis BioPath 20 0.000 2 0.096


Leaf Glycerolipid Biosynthesis in Plastid BioPath 20 0.000 2 0.005

fatty acid biosynthesis TAIR-GO 20 0.000 2 0.000

fatty acid biosynthesis -- initial steps AraCyc 20 0.000 2 0.000

Fatty acid biosynthesis (path 1) KEGG 20 0.000 2 0.000

Synthesis of fatty acids in plastids AcylLipid 20 0.000 2 0.000










Pyruvate metabolism KEGG 16 0.000 2 0.003










Ribosome KEGG 12 0.014 2 0.094










biotin binding TAIR-GO 10 0.000 1 0.000










fatty acid biosynthesis FunCat 10 0.000 1 0.000










isoprenoid biosynthesis FunCat 10 0.000 1 0.026










lipid, fatty acid and isoprenoid biosynthesis FunCat 10 0.000 1 0.020










lipid, fatty acid and isoprenoid metabolism FunCat 10 0.000 1 0.012










Propanoate metabolism KEGG 10 0.000 1 0.007










Tetracycline biosynthesis KEGG 10 0.000 1 0.000












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP77A4 (At5g04660)







max. difference between log2-ratios: 3.6











max. difference between log2-ratios excluding lowest and highest 5%: 1.5

















Link to stress heatmap






there are no co-expressed genes with more than 6 annotation points








































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP77A4 (At5g04660)







max. difference between log2-ratios: 1.8











max. difference between log2-ratios excluding lowest and highest 5%: 1.0

















Link to hormones etc. heatmap






there are no co-expressed genes with r>0.5









































































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP77A4 (At5g04660)







max. difference between log2-ratios: 3.3











max. difference between log2-ratios excluding lowest and highest 5%: 1.6

















Link to mutants heatmap






there are no co-expressed genes with r>0.5





































page created by Juergen Ehlting 05/12/06