Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP77A6 (At3g10570)	save all data as Tab Delimited Table
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Pathways co-expressed in all the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways common in the 3 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP77A6 (At3g10570)
max. difference between log2-ratios:				8.2
max. difference between log2-ratios excluding lowest and highest 5%:				5.7
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Miscellaneous acyl lipid metabolism	AcylLipid	64	0.000	17	0.000
Cell Wall Carbohydrate Metabolism	BioPath	41	0.000	10	0.003
pectin metabolism	BioPath	39	0.000	9	0.000
Fatty acid elongation and wax and cutin metabolism	AcylLipid	32	0.000	7	0.012
mono-/sesqui-/di-terpene biosynthesis	LitPath	30	0.000	3	0.003
terpenoid metabolism	LitPath	30	0.000	3	0.004
Starch and sucrose metabolism	KEGG	26	0.000	4	0.000
Gluconeogenesis from lipids in seeds	BioPath	20	0.000	2	0.059
sexual reproduction	TAIR-GO	20	0.000	5	0.000
fatty acid oxidation pathway	AraCyc	20	0.000	2	0.000
octane oxidation	AraCyc	20	0.000	2	0.000
fatty acid metabolism	TAIR-GO	18	0.000	2	0.002
cellulose biosynthesis	AraCyc	12	0.000	3	0.000
cutin biosynthesis	TAIR-GO	10	0.000	1	0.000
fatty acid biosynthesis	TAIR-GO	10	0.000	1	0.011
monoterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.001
pentacyclic triterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.003
monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
plant monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
Biosynthesis of steroids	KEGG	10	0.000	1	0.025
Fatty acid metabolism	KEGG	10	0.000	1	0.014
monoterpene biosynthesis	LitPath	10	0.000	1	0.004
sequiterpene biosynthesis	LitPath	10	0.000	1	0.000
triterpene biosynthesis	LitPath	10	0.000	1	0.019
C-compound and carbohydrate utilization	FunCat	8	0.000	2	0.000
cuticle biosynthesis	TAIR-GO	7	0.000	1	0.007
wax biosynthesis	TAIR-GO	7	0.000	1	0.002
epicuticular wax biosynthesis	AraCyc	7	0.000	1	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP77A6 (At3g10570)
max. difference between log2-ratios:				6.2
max. difference between log2-ratios excluding lowest and highest 5%:				2.5
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
fatty acid metabolism	TAIR-GO	18	0.000	2	0.000
Fatty acid elongation and wax and cutin metabolism	AcylLipid	18	0.000	2	0.005
Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)						CYP77A6 (At3g10570)
max. difference between log2-ratios:				6.4
max. difference between log2-ratios excluding lowest and highest 5%:				1.8
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Cell Wall Carbohydrate Metabolism	BioPath	89	0.000	22	0.000
pectin metabolism	BioPath	67	0.000	18	0.000
Starch and sucrose metabolism	KEGG	42	0.000	6	0.000
mono-/sesqui-/di-terpene biosynthesis	LitPath	40	0.000	4	0.000
terpenoid metabolism	LitPath	40	0.000	4	0.000
Miscellaneous acyl lipid metabolism	AcylLipid	26	0.000	10	0.000
Lipid signaling	AcylLipid	20	0.010	2	0.806
sucrose metabolism	BioPath	16	0.000	2	0.004
Galactose metabolism	KEGG	16	0.000	2	0.001
biogenesis of cell wall	FunCat	14	0.000	6	0.000
C-compound and carbohydrate utilization	FunCat	14	0.000	2	0.000
sexual reproduction	TAIR-GO	12	0.000	3	0.000
Oxidative phosphorylation	KEGG	12	0.000	3	0.001
jasmonic acid biosynthesis	TAIR-GO	10	0.000	1	0.011
jasmonic acid mediated signaling pathway	TAIR-GO	10	0.000	1	0.000
jasmonic acid metabolism	TAIR-GO	10	0.000	1	0.000
monoterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.000
N-terminal protein myristoylation	TAIR-GO	10	0.000	1	0.004
response to wounding	TAIR-GO	10	0.000	1	0.015
jasmonic acid biosynthesis	AraCyc	10	0.000	1	0.001
monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
plant monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
C-compound, carbohydrate catabolism	FunCat	10	0.000	3	0.001
monoterpene biosynthesis	LitPath	10	0.000	1	0.002
sequiterpene biosynthesis	LitPath	10	0.000	1	0.000
cellulose biosynthesis	AraCyc	8	0.000	2	0.000
lactose degradation IV	AraCyc	8	0.000	2	0.000
Pentose and glucuronate interconversions	KEGG	8	0.000	2	0.000
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP77A6 (At3g10570)
max. difference between log2-ratios:				5.1
max. difference between log2-ratios excluding lowest and highest 5%:				2.6
						Link to mutants heatmap
there are no co-expressed genes with r>0.5
page created by Juergen Ehlting	05/19/06