| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP77A7 (At3g10560) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are no co-expressed pathway common in the 2 data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP77A7 (At3g10560) | |||||||||||||||
| max. difference between log2-ratios: | 2.4 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.2 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| Cell Wall Carbohydrate Metabolism | BioPath | 12 | 0.000 | 3 | 0.003 |
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| C-compound, carbohydrate catabolism | FunCat | 10 | 0.000 | 2 | 0.000 | |||||||||||
| Starch and sucrose metabolism | KEGG | 10 | 0.000 | 2 | 0.000 | |||||||||||
| mono-/sesqui-/di-terpene biosynthesis | LitPath | 10 | 0.000 | 1 | 0.002 | |||||||||||
| terpenoid metabolism | LitPath | 10 | 0.000 | 1 | 0.002 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP77A7 (At3g10560) | |||||||||||||||
| max. difference between log2-ratios: | 2.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.2 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP77A7 (At3g10560) | |||||||||||||||
| max. difference between log2-ratios: | 0.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.0 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| Photosystems | BioPath | 12 | 0.000 | 2 | 0.008 |
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| Leaf Glycerolipid Biosynthesis | BioPath | 8 | 0.032 | 1 | 0.160 | |||||||||||
| Leaf Glycerolipid Biosynthesis in Plastid | BioPath | 8 | 0.000 | 1 | 0.022 | |||||||||||
| Synthesis of fatty acids in plastids | AcylLipid | 8 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP77A7 (At3g10560) | |||||||||||||||
| max. difference between log2-ratios: | 1.1 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.1 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| page created by Juergen Ehlting | 05/19/06 | |||||||||||||||