Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP77A9 (At5g04630)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are co-expressed genes in 1 data set only
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP77A9 (At5g04630)
max. difference between log2-ratios:				0.0
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
not expressed to detectable levels in any sample
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP77A9 (At5g04630)
max. difference between log2-ratios:				0.0
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
not expressed to detectable levels in any sample
Pathways co-expressed in the Hormone etc. data set (with more than 15 annotation points)						CYP77A9 (At5g04630)
max. difference between log2-ratios:				0.4
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Cell Wall Carbohydrate Metabolism	BioPath	132	0.000	41	0.000
pectin metabolism	BioPath	72	0.000	29	0.000
Ribosome	KEGG	44	0.030	8	0.416
mono-/sesqui-/di-terpene biosynthesis	LitPath	32	0.000	5	0.006
terpenoid metabolism	LitPath	32	0.000	5	0.007
Fructose and mannose metabolism	KEGG	30	0.000	5	0.003
Fatty acid elongation and wax and cutin metabolism	AcylLipid	27	0.000	9	0.000
cellulose biosynthesis	BioPath	26	0.000	5	0.018
nucleotide metabolism	FunCat	24	0.000	6	0.000
Miscellaneous acyl lipid metabolism	AcylLipid	22	0.028	9	0.160
(deoxy)ribose phosphate degradation	AraCyc	20	0.000	4	0.000
biosynthesis of derivatives of homoisopentenyl pyrophosphate	FunCat	20	0.000	2	0.024
pyrimidine nucleotide metabolism	FunCat	20	0.000	4	0.001
Glycolysis / Gluconeogenesis	KEGG	20	0.001	5	0.035
Nucleotide Metabolism	KEGG	20	0.000	4	0.093
Pyrimidine metabolism	KEGG	20	0.000	4	0.008
Flavonoid and anthocyanin metabolism	BioPath	19	0.000	5	0.044
biogenesis of cell wall	FunCat	18	0.002	7	0.005
transport	FunCat	18	0.000	5	0.000
Starch and sucrose metabolism	KEGG	18	0.010	6	0.009
hemicellulose biosynthesis	BioPath	16	0.000	2	0.037
acetate fermentation	AraCyc	16	0.000	4	0.030
fructose degradation (anaerobic)	AraCyc	16	0.000	4	0.022
glycerol degradation II	AraCyc	16	0.000	4	0.006
glycolysis IV	AraCyc	16	0.000	4	0.024
non-phosphorylated glucose degradation	AraCyc	16	0.000	4	0.001
sorbitol fermentation	AraCyc	16	0.000	4	0.027
Glycan Biosynthesis and Metabolism	KEGG	16	0.002	2	0.325
Glycerolipid metabolism	KEGG	16	0.000	2	0.086
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP77A9 (At5g04630)
max. difference between log2-ratios:				0.0
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
not expressed to detectable levels in any sample
page created by Juergen Ehlting	05/19/06