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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| sterol biosynthesis |
BioPath |
20 |
2 |
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| brassinosteroid biosynthesis |
TAIR-GO |
20 |
2 |
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| sterol biosynthesis |
BioPath |
20 |
2 |
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| brassinosteroid biosynthesis |
TAIR-GO |
20 |
2 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
20 |
2 |
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| starch biosynthesis |
TAIR-GO |
18 |
2 |
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| starch biosynthesis |
TAIR-GO |
18 |
2 |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) |
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CYP77B1 (At1g11600) |
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| max. difference between log2-ratios: |
4.8 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.6 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
26 |
0.000 |
9 |
0.001 |
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| fatty acid metabolism |
TAIR-GO |
20 |
0.000 |
3 |
0.000 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
20 |
0.000 |
3 |
0.082 |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
19 |
0.000 |
5 |
0.010 |
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| core phenylpropanoid metabolism |
BioPath |
10 |
0.000 |
1 |
0.029 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
10 |
0.000 |
1 |
0.054 |
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| pectin metabolism |
BioPath |
10 |
0.000 |
4 |
0.001 |
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| Phenylpropanoid Metabolism |
BioPath |
10 |
0.025 |
1 |
0.278 |
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| sterol biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.010 |
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| brassinosteroid biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.006 |
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| growth |
TAIR-GO |
10 |
0.000 |
1 |
0.024 |
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| long-chain fatty acid metabolism |
TAIR-GO |
10 |
0.000 |
2 |
0.001 |
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| response to light |
TAIR-GO |
10 |
0.000 |
1 |
0.053 |
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| steroid biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.006 |
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| unidimensional cell growth |
TAIR-GO |
10 |
0.000 |
1 |
0.007 |
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| very-long-chain fatty acid metabolism |
TAIR-GO |
10 |
0.000 |
2 |
0.000 |
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| atty acid elongation -- unsaturated |
AraCyc |
10 |
0.000 |
2 |
0.000 |
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| cutin biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| fatty acid biosynthesis -- initial steps |
AraCyc |
10 |
0.000 |
2 |
0.000 |
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| fatty acid elongation -- saturated |
AraCyc |
10 |
0.000 |
2 |
0.000 |
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| fatty acid elongation -- unsaturated |
AraCyc |
10 |
0.000 |
2 |
0.000 |
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| octane oxidation |
AraCyc |
10 |
0.000 |
1 |
0.001 |
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| sterol biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.003 |
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| suberin biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.003 |
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| biogenesis of cell wall |
FunCat |
10 |
0.000 |
1 |
0.024 |
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| biosynthesis of phenylpropanoids |
FunCat |
10 |
0.000 |
1 |
0.007 |
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| biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine |
FunCat |
10 |
0.000 |
1 |
0.007 |
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| brassinosteroid biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.009 |
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| fatty acid modulation |
LitPath |
10 |
0.000 |
1 |
0.000 |
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| Phenylpropanoid pathway |
LitPath |
10 |
0.003 |
1 |
0.106 |
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| sterol and brassinosteroid biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.004 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
10 |
0.003 |
1 |
0.079 |
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