Co-Expression Analysis of:			CYP78A9 (At3g61880)	Institut de Biologie Moléculaire des Plantes																																																																																																												_____________________________________________		____________________________________	____________________________________	____________________________________	____________________________________	____________________________________	____________________________________	____________________________________	____________________________________
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Hormones etc. Data Set			save / view heatmap as:		OpenOffice Table			annotation details for co-expressed genes can be found to the right of the heatmap
					MS Excel Table
			save / view all data as:		Tab delimited Table			For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets.
shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only)			magnitude of change [log2(treatment/control)]	0	0.3	0.6	0.9	1.2	1.5	1.8	2.1	2.4	2.7	>2.99
			greater than zero
			less than zero
Locus	r-value	Name	Description	ethylene, 3h, petiole (13)	mock, 30min, seedling (110)	IAA, 30min, seedling (110)	IAA, 1h, seedling (110)	IAA, 3h, seedling (110)	zeatin, 30min, seedling (110)	zeatin, 1h, seedling (110)	zeatin, 3h, seedling (110)	GA3, 30min, seedling (110)	GA3, 1h, seedling (110)	GA3, 3h, seedling (110)	ABA, 30min, seedling (110)	ABA, 1h, seedling (110)	ABA, 3h, seedling (110)	MJ, 30min, seedling (110)	MJ, 1h, seedling (110)	MJ, 3h, seedling (110)	ACC, 30min, seedling (110)	ACC, 1h, seedling (110)	ACC, 3h, seedling (110)	BL, 30min, seedling (110)	BL, 1h, seedling (110)	BL, 3h, seedling (110)	ABA, 3 uM, imbided seed (116)	ABA, 30 uM, imbided seed (116)	GA, 3h, imbibed seed (119)	GA, 6h, imbibed seed (119)	GA, 9h, imbibed seed (119)	GA, 3h, imbibed seed (134)	GA, 6h, imbibed seed (134)	GA, 9h, imbibed seed (134)	GA, 30min, whole plant (99)	GA, 60min, whole plant (99)	GA, 3h, whole plant (99)	IAA, 0.1uM, 1h, seedling (144)	IAA, 0.1uM, 3h, seedling (144)	IAA, 1uM, 1h, seedling (144)	IAA, 1uM, 3h, seedling (144)	ppi, 3h, seedling (113)	ppi, 12h, seedling (113)	uni, 3h, seedling (113)	uni, 12h, seedling (113)	brz220, 3h, seedling (113)	brz220, 12h, seedling (113)	brz91, 3h, seedling (113)	brz91, 12h, seedling (113)	pac, 3h, seedling (113)	pac, 12h, seedling (113)	px, 3h, seedling (113)	px, 12h, seedling (113)	pno8, 3h, seedling (113)	pno8, 12h, seedling (113)	ibup, 3h, seedling (113)	B9, 3h, seedling (113)	AgNO3, 3h, seedling (113)	AVG, 3h, seedling (113)	Sal, 3h, seedling (113)	MG132, 3h, seedling (113)	246T, 3h, seedling (113)	PCIB, 3h, seedling (113)	TIBA, 3h, seedling (113)	NPA, 3h, seedling (113)	CHX, 3h, seedling (113)	Colm, 3h, seedling (113)	ColPNO8, 3h, seedling (113)	ColBrz, 3h, seedling (113)	glucose, 8h, seedling (14)	sucrose, 8h, seedling (15)	deoxyglucose, 8h_seedling (14)	methylglucose, 8h, seedling (14)	K depleted, whole rosette (97)	K depleted, root (97)	Sulfate depleted, 2h, root (112)	Sulfate depleted, 4h, root (112)	Sulfate depleted, 8h, root (112)	Sulfate depleted, 12h, root (112)	Sulfate depleted, 24h, root (112)	mannitol, 8h, seedling (14)	CO2, 1000ppm, guard cell enriched (11)	CO2, 1000ppm, mature leaf (11)	CO2, high light, whole rosette (95)	CO2, medium light, whole rosette (95)	CO2, low light, whole rosette (95)	CO2, 2h, juvenile leaf (151)	CO2, 4h, juvenile leaf (151)	CO2, 6h, juvenile leaf (151)	CO2, 12h, juvenile leaf (151)	CO2, 24h, juvenile leaf (151)	CO2, 48h, juvenile leaf (151)	dark, 45min, seedling (109)	dark, 4h, seedling (109)	far red, 45min, seedling (109)	far red, 4h, seedling (109)	red pulse1, seedling (109)	red pulse2, seedling (109)	red, 45min, seedling (109)	red, 4h, seedling (109)	blue, 45min, seedling (109)	blue, 4h, seedling (109)	UV-A pulse1, seedling (109)	UV-A pulse2, seedling (109)	UV-AB pulse1, seedling (109)	UV-AB pulse2, seedling (109)	UV-A, 18h, mature leaf (72)	UV-B, 18h, mature leaf (72)	Locus	Probeset	Name	Description	Annotation score	GO.keywords	FunCat keywords	AraCyc annotations	KEGG annotations	BioPath annotations	AcylLipid category	Literature annotations	Gene family	90% quantile of DE	max. DE
At3g61880	1.000	CYP78A9	cytochrome P450 family protein. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs, in the funiculus at anthesis.	1.94	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-1.97	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.19	-0.23	At3g61880	251301_at	CYP78A9	cytochrome P450 family protein. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs, in the funiculus at anthesis.	2.5	fruit development							cytochrome P450 family	0.00	3.91
At5g06850	0.676		C2 domain-containing protein	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.3	0.03	-0.1	-0.07	0.03	-0.07	0.03	-0.07	0.03	-0.07	0.03	-0.07	0.03	-0.07	0.03	-0.07	0.03	-0.07	-0.07	-0.07	-0.07	-0.07	-0.07	-0.07	-0.07	-0.07	-0.07	-0.07	-0.07	-0.07	-0.07	0.03	0.03	0.03	0.03	0.03	0.04	0	-0.12	0.25	0.28	0.18	0.03	-1.85	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	0.03	At5g06850	250650_at		C2 domain-containing protein	2			tryptophan biosynthesis						0.11	2.16
At3g48990	0.668		AMP-dependent synthetase and ligase family protein, similar to peroxisomal-coenzyme A synthetase (FAT2)	1.77	0.02	0.14	0.13	0.07	0.22	-0.04	-0.24	0.08	-0.05	-0.28	-0.09	-0.16	-0.28	-0.14	-0.3	-0.22	-0.17	-0.19	-0.12	-0.25	-0.43	-0.32	-0.17	-0.28	0.13	0.03	0.02	0.13	0.03	0.02	-0.1	-0.02	-0.44	0.15	0.19	0.01	-0.12	0.03	0.17	-0.05	0.48	0	0.11	0.04	0.03	-0.11	0.28	0.1	0.2	0	0.16	0.28	0.22	-0.06	-0.27	0.12	0.05	0	0.13	0.05	-0.05	-0.45	0.01	-0.12	0.16	0.23	0.09	0.28	0.42	-0.11	0.13	-0.28	0.15	-0.22	-0.37	-0.07	0.39	-0.9	-0.3	-0.16	-0.17	0.22	0.09	-0.03	-0.08	0.13	-0.2	0.12	0.05	0	0	-0.03	-0.01	0.11	0	0.03	0.1	0.01	0.01	-0.03	0.01	-0.12	-0.08	0.4	At3g48990	252293_at		AMP-dependent synthetase and ligase family protein, similar to peroxisomal-coenzyme A synthetase (FAT2)	2		biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine | biosynthesis of phenylpropanoids | biosynthesis of stilbenes, flavonoids			Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Phylloquinone biosynthesis		plastochinone and phylloquinone biosynthesis | phylloquinone biosynthesis | Phenylpropanoid pathway	Acyl activating enzymes , CoA ligases, clade VII	0.60	2.67
At3g26150	0.629	CYP71B16	cytochrome P450 family protein	0.51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	At3g26150	257631_at (m)	CYP71B16	cytochrome P450 family protein	1								cytochrome P450 family	0.00	0.93
At3g26160	0.629	CYP71B17	cytochrome P450 family protein	0.51	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	-0.42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	At3g26160	257631_at (m)	CYP71B17	cytochrome P450 family protein	1								cytochrome P450 family	0.00	0.93
At1g23200	0.584		pectinesterase family protein	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.42	0.75	0.01	0.01	0.01	-0.41	0.01	0.01	0.01	0.01	0.01	-0.34	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.64	0.36	-0.04	0.01	-0.51	-0.02	0.01	-1.74	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	At1g23200	264891_at		pectinesterase family protein	2					Cell Wall Carbohydrate Metabolism | pectin metabolism				0.02	2.50
At4g37970	0.572		mannitol dehydrogenase, putative, similar to ELI3-2 (Arabidopsis thaliana), and to sinapyl alcohol dehydrogenase (Populus tremuloides)	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	-0.09	0.02	0.02	0.02	0.07	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	-0.4	0.02	-0.18	0.02	-0.05	-0.04	-0.05	0.02	-0.05	-0.01	-0.05	0.02	-0.05	0.02	-0.05	0.02	0.02	0.02	0.02	0.02	0.02	0	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0	-0.03	-0.09	0.67	-0.1	0.03	0.02	-0.92	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	0.02	At4g37970	253017_at		mannitol dehydrogenase, putative, similar to ELI3-2 (Arabidopsis thaliana), and to sinapyl alcohol dehydrogenase (Populus tremuloides)	10		biogenesis of cell wall			Phenylpropanoid Metabolism | core phenylpropanoid metabolism		Phenylpropanoid pathway		0.10	1.59
At3g19040	0.567	HAF2	Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity. It is required in integrating light signals to regulate gene expression and growth.	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	-0.4	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.43	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	-0.92	-0.61	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	0.01	At3g19040	256946_at	HAF2	Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity. It is required in integrating light signals to regulate gene expression and growth.	7	response to light | histone acetylation | transcription factor TFIID complex | transcription cofactor activity			Transcription | Basal transcription factors					0.00	1.34
At3g25760	0.530	AOC1	encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during scenescence, a process that involves jasmonic acid signalling pathw	1.02	-0.02	-0.47	-0.05	0.01	-0.19	-0.09	0.24	-0.06	0.01	0.04	-0.32	0.05	-0.35	0.99	1.58	2.02	-0.21	0.06	0.18	-0.07	0.17	-0.21	-0.02	-0.02	-0.02	-0.02	-0.02	-0.02	-0.02	-0.02	0.04	-0.09	-0.85	-0.18	-0.64	-0.24	-0.79	0.53	-0.08	0.46	-0.04	0.25	-0.08	0.6	-0.08	-0.14	-0.3	0.92	0.63	0.59	-0.24	0.78	0.04	1.79	-0.39	0.1	0.41	0.39	-0.5	0.53	0.42	0.73	-0.64	0.09	-0.95	-0.37	-0.02	-0.42	-0.23	0.56	-1.27	-0.87	-0.02	-0.02	-0.02	-0.02	0.04	-4.4	-2.34	0.41	-0.26	-0.32	-0.59	-0.28	0.28	0.22	0.04	-0.24	-0.02	-0.02	-0.02	-0.02	-0.02	-0.02	-0.02	-0.02	-0.02	1.49	-0.02	-0.02	-0.02	-0.02	0.68	1.02	At3g25760	257641_s_at	AOC1	encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is induced during scenescence, a process that involves jasmonic acid signalling pathw	6	response to dessication | jasmonic acid biosynthesis		jasmonic acid biosynthesis | lipoxygenase pathway			Lipid signaling			1.85	6.41
page created by Juergen Ehlting			04/24/06