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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each); only pathways with a total of more than 50 annotation points are shown |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| this gene is expressed to detectable levels in only 1 experiment |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Hormone etc. data set (with more than 20 annotation points) |
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CYP79A2 (At5g05260) |
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| max. difference between log2-ratios: |
0.4 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
0.0 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
132 |
0.000 |
41 |
0.000 |
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| pectin metabolism |
BioPath |
72 |
0.000 |
29 |
0.000 |
| Ribosome |
KEGG |
44 |
0.030 |
8 |
0.416 |
| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
32 |
0.000 |
5 |
0.006 |
| terpenoid metabolism |
LitPath |
32 |
0.000 |
5 |
0.007 |
| Fructose and mannose metabolism |
KEGG |
30 |
0.000 |
5 |
0.003 |
| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
27 |
0.000 |
9 |
0.000 |
| cellulose biosynthesis |
BioPath |
26 |
0.000 |
5 |
0.018 |
| nucleotide metabolism |
FunCat |
24 |
0.000 |
6 |
0.000 |
| Miscellaneous acyl lipid metabolism |
AcylLipid |
22 |
0.028 |
9 |
0.160 |
| (deoxy)ribose phosphate degradation |
AraCyc |
20 |
0.000 |
4 |
0.000 |
| biosynthesis of derivatives of homoisopentenyl pyrophosphate |
FunCat |
20 |
0.000 |
2 |
0.024 |
| pyrimidine nucleotide metabolism |
FunCat |
20 |
0.000 |
4 |
0.001 |
| Glycolysis / Gluconeogenesis |
KEGG |
20 |
0.001 |
5 |
0.035 |
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| Nucleotide Metabolism |
KEGG |
20 |
0.000 |
4 |
0.093 |
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| Pyrimidine metabolism |
KEGG |
20 |
0.000 |
4 |
0.008 |
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