Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP81D1 (At5g36220) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are no co-expressed pathways common in all data sets



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP81D1 (At5g36220)







max. difference between log2-ratios: 5.3











max. difference between log2-ratios excluding lowest and highest 5%: 3.7











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Miscellaneous acyl lipid metabolism AcylLipid 12 0.000 3 0.005


Chloroplastic protein turnover BioPath 10 0.000 1 0.001

ERD1 protease (ClpC-like) BioPath 10 0.000 1 0.000

Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 10 0.000 1 0.030

Regulatory enzymes BioPath 10 0.000 1 0.000

ATP-dependent proteolysis TAIR-GO 10 0.000 1 0.003

carotenoid biosynthesis TAIR-GO 10 0.000 1 0.001

plastid organization and biogenesis TAIR-GO 10 0.000 1 0.000










response to high light intensity TAIR-GO 10 0.000 1 0.000










response to temperature TAIR-GO 10 0.000 1 0.000










stress response FunCat 10 0.000 1 0.000










Accessory protein/regulatory protein LitPath 10 0.000 1 0.000










cellulose biosynthesis BioPath 8 0.000 1 0.009










hemicellulose biosynthesis BioPath 8 0.000 1 0.001










Fructose and mannose metabolism KEGG 8 0.000 1 0.023










Glycan Biosynthesis and Metabolism KEGG 8 0.000 1 0.041










Glycerolipid metabolism KEGG 8 0.000 1 0.012










Ion channels KEGG 8 0.000 4 0.000










Ligand-Receptor Interaction KEGG 8 0.000 4 0.000












































Pathways co-expressed in the Stress data set ( with more than 20 annotation points)
CYP81D1 (At5g36220)







max. difference between log2-ratios: 7.9











max. difference between log2-ratios excluding lowest and highest 5%: 2.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






response to wounding TAIR-GO 59 0.000 7 0.000
Phenylpropanoid Metabolism BioPath 46 0.000 7 0.001
Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 46 0.000 5 0.000
Gluconeogenesis from lipids in seeds BioPath 43 0.000 5 0.000
Lipid signaling AcylLipid 43 0.000 5 0.004
response to jasmonic acid stimulus TAIR-GO 39 0.000 5 0.000
jasmonic acid biosynthesis TAIR-GO 33 0.000 4 0.000
jasmonic acid biosynthesis AraCyc 33 0.000 4 0.000
lipoxygenase pathway AraCyc 33 0.000 4 0.000
Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 30 0.000 3 0.004
tryptophan biosynthesis TAIR-GO 30 0.000 3 0.001
tryptophan biosynthesis AraCyc 30 0.000 3 0.001










Shikimate pathway LitPath 30 0.000 3 0.011










Trp biosyntesis LitPath 30 0.000 3 0.000










Fatty acid metabolism KEGG 28 0.000 3 0.002










Arginine and proline metabolism KEGG 27 0.000 4 0.000










Degradation of storage lipids and straight fatty acids AcylLipid 27 0.000 3 0.002










Biosynthesis of Amino Acids and Derivatives BioPath 24 0.011 4 0.052










amino acid metabolism FunCat 21 0.000 3 0.011












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP81D1 (At5g36220)







max. difference between log2-ratios: 4.7











max. difference between log2-ratios excluding lowest and highest 5%: 2.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Phenylpropanoid Metabolism BioPath 89 0.000 15 0.000





Shikimate pathway LitPath 88 0.000 12 0.000




Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 82 0.000 11 0.000




tryptophan biosynthesis TAIR-GO 78 0.000 10 0.000




Trp biosyntesis LitPath 78 0.000 10 0.000




tryptophan biosynthesis AraCyc 68 0.000 9 0.000




response to pathogenic bacteria TAIR-GO 48 0.000 7 0.000




Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 48 0.000 6 0.000




amino acid metabolism FunCat 45 0.000 7 0.000




response to wounding TAIR-GO 42 0.000 5 0.000




jasmonic acid biosynthesis TAIR-GO 32 0.000 4 0.000




jasmonic acid biosynthesis AraCyc 32 0.000 4 0.000




Lipid signaling AcylLipid 32 0.000 4 0.004










lipoxygenase pathway AraCyc 22 0.000 3 0.000










Glutathione metabolism BioPath 16 0.001 2 0.122










response to jasmonic acid stimulus TAIR-GO 16 0.000 2 0.000










cysteine biosynthesis I AraCyc 16 0.000 2 0.020










sulfate assimilation III AraCyc 16 0.000 2 0.013










Miscellaneous acyl lipid metabolism AcylLipid 16 0.013 2 0.200










defense response TAIR-GO 13 0.000 2 0.011










arginine degradation V AraCyc 11 0.000 2 0.001










Arginine and proline metabolism KEGG 11 0.000 2 0.003










Urea cycle and metabolism of amino groups KEGG 11 0.000 2 0.001





























































Pathways co-expressed in the Mutant data set (with more than 20 annotation points)
CYP81D1 (At5g36220)







max. difference between log2-ratios: 5.8











max. difference between log2-ratios excluding lowest and highest 5%: 4.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Biosynthesis of Amino Acids and Derivatives BioPath 54 0.000 7 0.019



Glutathione metabolism BioPath 48 0.000 6 0.000


Intermediary Carbon Metabolism BioPath 40 0.000 5 0.103


glycolysis and gluconeogenesis FunCat 40 0.000 5 0.006


sulfate assimilation III AraCyc 36 0.000 4 0.000


C-compound and carbohydrate metabolism FunCat 34 0.013 4 0.329


Phenylpropanoid Metabolism BioPath 31 0.015 7 0.023


acetate fermentation AraCyc 30 0.000 4 0.012


fructose degradation (anaerobic) AraCyc 30 0.000 4 0.008


glycerol degradation II AraCyc 30 0.000 4 0.002


glycolysis I AraCyc 30 0.000 4 0.117


glycolysis IV AraCyc 30 0.000 4 0.009


sorbitol fermentation AraCyc 30 0.000 4 0.010










Glycolysis / Gluconeogenesis KEGG 30 0.000 4 0.005










Photosystems BioPath 28 0.001 4 0.066










response to wounding TAIR-GO 26 0.000 3 0.003










dissimilatory sulfate reduction AraCyc 26 0.000 3 0.000










gluconeogenesis AraCyc 24 0.000 3 0.012










glyceraldehyde 3-phosphate degradation AraCyc 24 0.000 3 0.001










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 24 0.000 3 0.003










Gluconeogenesis from lipids in seeds BioPath 22 0.000 3 0.051



























page created by Juergen Ehlting 06/28/06