| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP81D10 (At1g66540) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in the 2 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are no co-expressed pathways common in the 2 data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) | CYP81D10 (At1g66540) | |||||||||||||||
| max. difference between log2-ratios: | 7.0 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.7 | |||||||||||||||
| Link to organ heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP81D10 (At1g66540) | |||||||||||||||
| max. difference between log2-ratios: | 4.0 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.7 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to stress heatmap | ||||||||||
| photosystem I | TAIR-GO | 9 | 0.000 | 1 | 0.000 |
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| photosystem II | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| photosystem II (sensu Viridiplantae) | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| proteolysis and peptidolysis | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| response to light | TAIR-GO | 9 | 0.000 | 1 | 0.005 | |||||||||||
| response to light intensity | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| Folding, Sorting and Degradation | KEGG | 9 | 0.000 | 1 | 0.001 | |||||||||||
| Protein folding and associated processing | KEGG | 9 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP81D10 (At1g66540) | |||||||||||||||
| max. difference between log2-ratios: | 2.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.9 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| biogenesis of cell wall | FunCat | 12 | 0.000 | 2 | 0.000 |
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| core phenylpropanoid metabolism | BioPath | 10 | 0.000 | 1 | 0.004 | |||||||||||
| Phenylpropanoid Metabolism | BioPath | 10 | 0.000 | 1 | 0.053 | |||||||||||
| hypersensitive response | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| response to bacteria | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| mixed acid fermentation | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| sorbitol fermentation | AraCyc | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Phenylpropanoid pathway | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP81D10 (At1g66540) | |||||||||||||||
| max. difference between log2-ratios: | 4.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.9 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| page created by Juergen Ehlting | 06/28/06 | |||||||||||||||