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| Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| Phenylpropanoid Metabolism |
BioPath |
71 |
8 |
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| Glucosyltransferases for benzoic acids |
BioPath |
60 |
6 |
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| cell plate formation (sensu Magnoliophyta) |
TAIR-GO |
30 |
3 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) |
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CYP81D11 (At3g28740) |
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| max. difference between log2-ratios: |
6.8 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.4 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| Phenylpropanoid Metabolism |
BioPath |
51 |
0.000 |
6 |
0.000 |
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| Glucosyltransferases for benzoic acids |
BioPath |
40 |
0.000 |
4 |
0.000 |
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| Biosynthesis of Amino Acids and Derivatives |
BioPath |
20 |
0.004 |
2 |
0.126 |
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| Glutathione metabolism |
BioPath |
20 |
0.000 |
2 |
0.014 |
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| sulfate assimilation III |
AraCyc |
20 |
0.000 |
2 |
0.001 |
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| nitrogen and sulfur metabolism |
FunCat |
20 |
0.000 |
2 |
0.000 |
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| Cysteine metabolism |
KEGG |
14 |
0.000 |
2 |
0.001 |
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| Chloroplastic protein turnover |
BioPath |
10 |
0.000 |
1 |
0.003 |
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| core phenylpropanoid metabolism |
BioPath |
10 |
0.000 |
1 |
0.044 |
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| ERD1 protease (ClpC-like) |
BioPath |
10 |
0.000 |
1 |
0.000 |
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| ATP-dependent proteolysis |
TAIR-GO |
10 |
0.000 |
1 |
0.002 |
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| cell plate formation (sensu Magnoliophyta) |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| cellular response to sulfate starvation |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| lignin biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.001 |
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| response to toxin |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| sulfate assimilation |
TAIR-GO |
10 |
0.000 |
1 |
0.001 |
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| toxin catabolism |
TAIR-GO |
10 |
0.000 |
5 |
0.000 |
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| xenobiotic catabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| cysteine biosynthesis I |
AraCyc |
10 |
0.000 |
1 |
0.016 |
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| dissimilatory sulfate reduction |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| flavonol biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.004 |
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| lignin biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.020 |
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| amino acid metabolism |
FunCat |
10 |
0.002 |
1 |
0.096 |
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| biosynthesis of phenylpropanoids |
FunCat |
10 |
0.000 |
1 |
0.013 |
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| biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine |
FunCat |
10 |
0.000 |
1 |
0.013 |
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| C-compound and carbohydrate utilization |
FunCat |
10 |
0.000 |
1 |
0.000 |
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| stress response |
FunCat |
10 |
0.000 |
1 |
0.000 |
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| Sulfur metabolism |
KEGG |
10 |
0.000 |
1 |
0.010 |
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| Phenylpropanoid pathway |
LitPath |
10 |
0.000 |
1 |
0.037 |
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