| _________________________________________ |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) |
|
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
|
|
|
|
|
|
|
| Pathway |
Source |
Sum of scores |
Sum of genes |
|
|
|
|
|
|
|
| abscisic acid biosynthesis |
TAIR-GO |
84 |
14 |
|
|
|
|
|
|
|
| abscisic acid biosynthesis |
AraCyc |
84 |
14 |
|
|
|
|
|
|
|
| abscisic acid biosynthesis |
LitPath |
84 |
14 |
|
|
|
|
|
|
|
|
|
|
|
|
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
For more information on how these pathway maps were generated please read the methods page |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Organ and Tissue data set (with more than 9 annotation points) |
|
CYP81D2(At4g37360) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
4.0 |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
1.0 |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
|
|
|
|
|
|
|
| Cell Wall Carbohydrate Metabolism |
BioPath |
38 |
0.000 |
10 |
0.005 |
|
|
|
| Gibberellin metabolism |
LitPath |
24 |
0.000 |
4 |
0.000 |
|
|
| giberelin biosynthesis |
LitPath |
24 |
0.000 |
4 |
0.000 |
|
|
| Flavonoid and anthocyanin metabolism |
BioPath |
22 |
0.000 |
4 |
0.001 |
|
|
| Phenylpropanoid Metabolism |
BioPath |
22 |
0.001 |
4 |
0.096 |
|
|
| pectin metabolism |
BioPath |
16 |
0.000 |
7 |
0.001 |
|
|
| secondary metabolism |
FunCat |
14 |
0.000 |
3 |
0.011 |
|
|
| abscisic acid biosynthesis |
TAIR-GO |
12 |
0.000 |
2 |
0.000 |
|
|
| abscisic acid biosynthesis |
AraCyc |
12 |
0.000 |
2 |
0.000 |
|
|
| isoprenoid biosynthesis |
FunCat |
12 |
0.001 |
2 |
0.060 |
|
|
| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
12 |
0.000 |
2 |
0.042 |
|
|
| Stilbene, coumarine and lignin biosynthesis |
KEGG |
12 |
0.000 |
2 |
0.008 |
|
|
| abscisic acid biosynthesis |
LitPath |
12 |
0.000 |
2 |
0.002 |
|
|
| Carotenoid and abscisic acid metabolism |
LitPath |
12 |
0.001 |
2 |
0.042 |
|
|
|
|
|
|
|
|
|
|
|
| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
12 |
0.003 |
3 |
0.026 |
|
|
|
|
|
|
|
|
|
|
|
| terpenoid metabolism |
LitPath |
12 |
0.003 |
3 |
0.029 |
|
|
|
|
|
|
|
|
|
|
|
| Biosynthesis of prenyl diphosphates |
BioPath |
10 |
0.001 |
1 |
0.130 |
|
|
|
|
|
|
|
|
|
|
|
| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
10 |
0.017 |
1 |
0.228 |
|
|
|
|
|
|
|
|
|
|
|
| sucrose metabolism |
BioPath |
10 |
0.000 |
1 |
0.029 |
|
|
|
|
|
|
|
|
|
|
|
| dolichol biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| gibberellic acid biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.004 |
|
|
|
|
|
|
|
|
|
|
|
| proanthocyanidin biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| response to hypoxia |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| anthocyanin biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.003 |
|
|
|
|
|
|
|
|
|
|
|
| gibberellin biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.003 |
|
|
|
|
|
|
|
|
|
|
|
| sucrose biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.009 |
|
|
|
|
|
|
|
|
|
|
|
| sucrose degradation III |
AraCyc |
10 |
0.000 |
1 |
0.006 |
|
|
|
|
|
|
|
|
|
|
|
| plant / fungal specific systemic sensing and response |
FunCat |
10 |
0.000 |
1 |
0.031 |
|
|
|
|
|
|
|
|
|
|
|
| plant hormonal regulation |
FunCat |
10 |
0.000 |
1 |
0.031 |
|
|
|
|
|
|
|
|
|
|
|
| Ascorbate and aldarate metabolism |
KEGG |
10 |
0.000 |
1 |
0.005 |
|
|
|
|
|
|
|
|
|
|
|
| Diterpenoid biosynthesis |
KEGG |
10 |
0.000 |
1 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| Fluorene degradation |
KEGG |
10 |
0.000 |
1 |
0.002 |
|
|
|
|
|
|
|
|
|
|
|
| gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.002 |
|
|
|
|
|
|
|
|
|
|
|
| Starch and sucrose metabolism |
KEGG |
10 |
0.000 |
1 |
0.041 |
|
|
|
|
|
|
|
|
|
|
|
| flavonoid, anthocyanin, and proanthocyanidin biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.063 |
|
|
|
|
|
|
|
|
|
|
|
| polyprenyl diphosphate biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.034 |
|
|
|
|
|
|
|
|
|
|
|
| proanthocyanidin biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.063 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Hormone etc. data set (with more than 15 annotation points) |
|
CYP81D2(At4g37360) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
0.4 |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
0.0 |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
|
|
|
|
|
|
|
| Cell Wall Carbohydrate Metabolism |
BioPath |
132 |
0.000 |
41 |
0.000 |
|
|
|
|
|
|
| pectin metabolism |
BioPath |
72 |
0.000 |
29 |
0.000 |
|
|
|
|
|
| Ribosome |
KEGG |
44 |
0.030 |
8 |
0.416 |
|
|
|
|
|
| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
32 |
0.000 |
5 |
0.006 |
|
|
|
|
|
| terpenoid metabolism |
LitPath |
32 |
0.000 |
5 |
0.007 |
|
|
|
|
|
| Fructose and mannose metabolism |
KEGG |
30 |
0.000 |
5 |
0.003 |
|
|
|
|
|
| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
27 |
0.000 |
9 |
0.000 |
|
|
|
|
|
| cellulose biosynthesis |
BioPath |
26 |
0.000 |
5 |
0.018 |
|
|
|
|
|
| nucleotide metabolism |
FunCat |
24 |
0.000 |
6 |
0.000 |
|
|
|
|
|
| Miscellaneous acyl lipid metabolism |
AcylLipid |
22 |
0.028 |
9 |
0.160 |
|
|
|
|
|
| (deoxy)ribose phosphate degradation |
AraCyc |
20 |
0.000 |
4 |
0.000 |
|
|
|
|
|
| biosynthesis of derivatives of homoisopentenyl pyrophosphate |
FunCat |
20 |
0.000 |
2 |
0.024 |
|
|
|
|
|
| pyrimidine nucleotide metabolism |
FunCat |
20 |
0.000 |
4 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| Glycolysis / Gluconeogenesis |
KEGG |
20 |
0.001 |
5 |
0.035 |
|
|
|
|
|
|
|
|
|
|
|
| Nucleotide Metabolism |
KEGG |
20 |
0.000 |
4 |
0.093 |
|
|
|
|
|
|
|
|
|
|
|
| Pyrimidine metabolism |
KEGG |
20 |
0.000 |
4 |
0.008 |
|
|
|
|
|
|
|
|
|
|
|
| Flavonoid and anthocyanin metabolism |
BioPath |
19 |
0.000 |
5 |
0.044 |
|
|
|
|
|
|
|
|
|
|
|
| biogenesis of cell wall |
FunCat |
18 |
0.002 |
7 |
0.005 |
|
|
|
|
|
|
|
|
|
|
|
| transport |
FunCat |
18 |
0.000 |
5 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| Starch and sucrose metabolism |
KEGG |
18 |
0.010 |
6 |
0.009 |
|
|
|
|
|
|
|
|
|
|
|
| hemicellulose biosynthesis |
BioPath |
16 |
0.000 |
2 |
0.037 |
|
|
|
|
|
|
|
|
|
|
|
| acetate fermentation |
AraCyc |
16 |
0.000 |
4 |
0.030 |
|
|
|
|
|
|
|
|
|
|
|
| fructose degradation (anaerobic) |
AraCyc |
16 |
0.000 |
4 |
0.022 |
|
|
|
|
|
|
|
|
|
|
|
| glycerol degradation II |
AraCyc |
16 |
0.000 |
4 |
0.006 |
|
|
|
|
|
|
|
|
|
|
|
| glycolysis IV |
AraCyc |
16 |
0.000 |
4 |
0.024 |
|
|
|
|
|
|
|
|
|
|
|
| non-phosphorylated glucose degradation |
AraCyc |
16 |
0.000 |
4 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| sorbitol fermentation |
AraCyc |
16 |
0.000 |
4 |
0.027 |
|
|
|
|
|
|
|
|
|
|
|
| Glycan Biosynthesis and Metabolism |
KEGG |
16 |
0.002 |
2 |
0.325 |
|
|
|
|
|
|
|
|
|
|
|
| Glycerolipid metabolism |
KEGG |
16 |
0.000 |
2 |
0.086 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Mutant data set (with more than 29 annotation points) |
|
CYP81D2(At4g37360) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
5.7 |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
0.2 |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
|
|
|
|
|
|
|
| Cell Wall Carbohydrate Metabolism |
BioPath |
163.5 |
0.000 |
55 |
0.000 |
|
|
|
|
| C-compound and carbohydrate metabolism |
FunCat |
120 |
0.008 |
30 |
0.138 |
|
|
|
| Ribosome |
KEGG |
112 |
0.004 |
20 |
0.498 |
|
|
|
| Biosynthesis of Amino Acids and Derivatives |
BioPath |
96 |
0.003 |
19 |
0.219 |
|
|
|
| Phenylpropanoid Metabolism |
BioPath |
94 |
0.001 |
17 |
0.462 |
|
|
|
| pectin metabolism |
BioPath |
84.5 |
0.000 |
38 |
0.000 |
|
|
|
| Lipid signaling |
AcylLipid |
83 |
0.000 |
20 |
0.010 |
|
|
|
| Purine metabolism |
KEGG |
47 |
0.000 |
8 |
0.052 |
|
|
|
| Benzoate degradation via CoA ligation |
KEGG |
45.5 |
0.000 |
11 |
0.055 |
|
|
|
| Nucleotide Metabolism |
KEGG |
45 |
0.000 |
8 |
0.162 |
|
|
|
| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
44 |
0.000 |
8 |
0.012 |
|
|
|
| terpenoid metabolism |
LitPath |
44 |
0.000 |
8 |
0.015 |
|
|
|
| intracellular signalling |
FunCat |
43.5 |
0.000 |
11 |
0.005 |
|
|
|
|
|
|
|
|
|
|
|
| Starch and sucrose metabolism |
KEGG |
43 |
0.001 |
11 |
0.017 |
|
|
|
|
|
|
|
|
|
|
|
| Translation factors |
KEGG |
41 |
0.000 |
15 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| Inositol phosphate metabolism |
KEGG |
40.5 |
0.001 |
11 |
0.093 |
|
|
|
|
|
|
|
|
|
|
|
| nucleotide metabolism |
FunCat |
40 |
0.000 |
9 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| lipases pathway |
AraCyc |
39 |
0.000 |
6 |
0.004 |
|
|
|
|
|
|
|
|
|
|
|
| lipid, fatty acid and isoprenoid degradation |
FunCat |
37 |
0.000 |
5 |
0.041 |
|
|
|
|
|
|
|
|
|
|
|
| Nicotinate and nicotinamide metabolism |
KEGG |
36.5 |
0.000 |
10 |
0.067 |
|
|
|
|
|
|
|
|
|
|
|
| biogenesis of cell wall |
FunCat |
36 |
0.001 |
13 |
0.003 |
|
|
|
|
|
|
|
|
|
|
|
| Pyrimidine metabolism |
KEGG |
36 |
0.000 |
7 |
0.014 |
|
|
|
|
|
|
|
|
|
|
|
| Aromatic amino acid (Phe, Tyr, Trp) metabolism |
BioPath |
32 |
0.028 |
4 |
0.660 |
|
|
|
|
|
|
|
|
|
|
|
| chlorophyll biosynthesis |
AraCyc |
32 |
0.001 |
8 |
0.023 |
|
|
|
|
|
|
|
|
|
|
|
| transcription |
FunCat |
31 |
0.000 |
8 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| Methionin/SAM/ethylene metabolism from cysteine and aspartate |
BioPath |
30 |
0.000 |
5 |
0.073 |
|
|
|
|
|
|
|
|
|
|
|
| trans-zeatin biosynthesis |
AraCyc |
30 |
0.000 |
6 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| degradation |
FunCat |
30 |
0.000 |
6 |
0.010 |
|
|
|
|
|
|
|
|
|
|
|
| Propanoate metabolism |
KEGG |
30 |
0.000 |
5 |
0.031 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
