Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP81D3 (At4g37340) save all data as Tab Delimited Table










_________________________________________














Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






mono-/sesqui-/di-terpene biosynthesis LitPath 36 9






terpenoid metabolism LitPath 36 9








biosynthesis of derivatives of homoisopentenyl pyrophosphate FunCat 16 4













To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP81D3 (At4g37340)







max. difference between log2-ratios: 2.4











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 20 0.000 5 0.000


terpenoid metabolism LitPath 20 0.000 5 0.000

Biosynthesis of steroids KEGG 11 0.000 2 0.000

Glucosyltransferases for benzoic acids BioPath 10 0.000 1 0.002

Phenylpropanoid Metabolism BioPath 10 0.000 1 0.229

secondary metabolism FunCat 9 0.000 2 0.000

pectin metabolism BioPath 8 0.000 3 0.006

biosynthesis of derivatives of homoisopentenyl pyrophosphate FunCat 8 0.000 2 0.000










pentacyclic triterpenoid biosynthesis TAIR-GO 7 0.000 1 0.000










triterpene biosynthesis LitPath 7 0.000 1 0.014












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP81D3 (At4g37340)







max. difference between log2-ratios: 4.0











max. difference between log2-ratios excluding lowest and highest 5%: 0.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






C-compound and carbohydrate metabolism FunCat 17 0.000 3 0.139
mono-/sesqui-/di-terpene biosynthesis LitPath 16 0.000 4 0.000
terpenoid metabolism LitPath 16 0.000 4 0.000
trehalose biosynthesis TAIR-GO 9 0.000 1 0.000
trehalose biosynthesis I AraCyc 9 0.000 1 0.003
trehalose biosynthesis II AraCyc 9 0.000 1 0.002
trehalose biosynthesis III AraCyc 9 0.000 1 0.001










energy FunCat 9 0.000 1 0.000










metabolism of energy reserves (e.g. glycogen, trehalose) FunCat 9 0.000 1 0.000










Cell Wall Carbohydrate Metabolism BioPath 8 0.006 2 0.093










Intermediary Carbon Metabolism BioPath 8 0.000 2 0.013










biosynthesis of derivatives of homoisopentenyl pyrophosphate FunCat 8 0.000 2 0.000












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP81D3 (At4g37340)







max. difference between log2-ratios: 0.9











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

















Link to hormones etc. heatmap






there are no co-expressed genes with more than 6 annotation points



































































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP81D3 (At4g37340)







max. difference between log2-ratios: 4.0











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

















Link to mutants heatmap






there are no co-expressed genes with r>0.5





































page created by Juergen Ehlting 06/28/06