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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
36 |
9 |
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| terpenoid metabolism |
LitPath |
36 |
9 |
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| biosynthesis of derivatives of homoisopentenyl pyrophosphate |
FunCat |
16 |
4 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) |
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CYP81D3 (At4g37340) |
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| max. difference between log2-ratios: |
4.0 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
0.6 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to stress heatmap |
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| C-compound and carbohydrate metabolism |
FunCat |
17 |
0.000 |
3 |
0.139 |
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| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
16 |
0.000 |
4 |
0.000 |
| terpenoid metabolism |
LitPath |
16 |
0.000 |
4 |
0.000 |
| trehalose biosynthesis |
TAIR-GO |
9 |
0.000 |
1 |
0.000 |
| trehalose biosynthesis I |
AraCyc |
9 |
0.000 |
1 |
0.003 |
| trehalose biosynthesis II |
AraCyc |
9 |
0.000 |
1 |
0.002 |
| trehalose biosynthesis III |
AraCyc |
9 |
0.000 |
1 |
0.001 |
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| energy |
FunCat |
9 |
0.000 |
1 |
0.000 |
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| metabolism of energy reserves (e.g. glycogen, trehalose) |
FunCat |
9 |
0.000 |
1 |
0.000 |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
8 |
0.006 |
2 |
0.093 |
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| Intermediary Carbon Metabolism |
BioPath |
8 |
0.000 |
2 |
0.013 |
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| biosynthesis of derivatives of homoisopentenyl pyrophosphate |
FunCat |
8 |
0.000 |
2 |
0.000 |
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