| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP81D5 (At4g37320) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are co-expressed pathways in the hormone data set only | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) | CYP81D5 (At4g37320) | |||||||||||||||
| max. difference between log2-ratios: | 3.5 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.8 | |||||||||||||||
| Link to organ heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Stress data set ( with more than 10 annotation points) | CYP81D5 (At4g37320) | |||||||||||||||
| max. difference between log2-ratios: | 4.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.5 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP81D5 (At4g37320) | |||||||||||||||
| max. difference between log2-ratios: | 1.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.3 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| Cell Wall Carbohydrate Metabolism | BioPath | 24 | 0.000 | 5 | 0.072 |
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| ATP synthesis | KEGG | 20 | 0.000 | 4 | 0.000 | |||||||||||
| biogenesis of chloroplast | FunCat | 16 | 0.000 | 2 | 0.005 | |||||||||||
| ascorbic acid biosynthesis | BioPath | 10 | 0.000 | 1 | 0.015 | |||||||||||
| Glucosyltransferases for benzoic acids | BioPath | 10 | 0.000 | 1 | 0.006 | |||||||||||
| Thylakoid biogenesis and photosystem assembly | BioPath | 10 | 0.000 | 1 | 0.002 | |||||||||||
| ascorbate glutathione cycle | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| C-compound and carbohydrate utilization | FunCat | 10 | 0.000 | 1 | 0.000 | |||||||||||
| stress response | FunCat | 10 | 0.000 | 1 | 0.000 | |||||||||||
| proteasome regulatory particle, base subcomplex (sensu Eukaryota) | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| protein catabolism | TAIR-GO | 9 | 0.000 | 1 | 0.003 | |||||||||||
| ubiquitin-dependent protein catabolism | TAIR-GO | 9 | 0.000 | 1 | 0.002 | |||||||||||
| degradation | FunCat | 9 | 0.000 | 1 | 0.009 | |||||||||||
| protein degradation | FunCat | 9 | 0.000 | 1 | 0.005 | |||||||||||
| Folding, Sorting and Degradation | KEGG | 9 | 0.001 | 1 | 0.149 | |||||||||||
| Proteasome | KEGG | 9 | 0.000 | 1 | 0.043 | |||||||||||
| Biosynthesis of prenyl diphosphates | BioPath | 8 | 0.001 | 2 | 0.007 | |||||||||||
| cellulose biosynthesis | BioPath | 8 | 0.000 | 1 | 0.061 | |||||||||||
| hemicellulose biosynthesis | BioPath | 8 | 0.000 | 1 | 0.009 | |||||||||||
| transport | FunCat | 8 | 0.000 | 2 | 0.000 | |||||||||||
| Biosynthesis of steroids | KEGG | 8 | 0.000 | 2 | 0.003 | |||||||||||
| Fructose and mannose metabolism | KEGG | 8 | 0.000 | 1 | 0.034 | |||||||||||
| Glycan Biosynthesis and Metabolism | KEGG | 8 | 0.000 | 1 | 0.061 | |||||||||||
| Glycerolipid metabolism | KEGG | 8 | 0.000 | 1 | 0.019 | |||||||||||
| Terpenoid biosynthesis | KEGG | 8 | 0.000 | 2 | 0.000 | |||||||||||
| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis | LitPath | 8 | 0.000 | 2 | 0.001 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) | CYP81D5 (At4g37320) | |||||||||||||||
| max. difference between log2-ratios: | 5.2 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.5 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| page created by Juergen Ehlting | 06/28/06 | |||||||||||||||