Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP81D6 / CYP81D7 (At2g23220 / At2g23190) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.






Pathway Source Sum of scores Sum of genes






degradation FunCat 420 77






transcription FunCat 102 15






RNA synthesis FunCat 31 5











To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP81D6 / CYP81D7 (At2g23220 / At2g23190)







max. difference between log2-ratios: 5.1











max. difference between log2-ratios excluding lowest and highest 5%: 0.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Cell Wall Carbohydrate Metabolism BioPath 30 0.000 7 0.028


secondary metabolism FunCat 24 0.000 4 0.002

Gibberellin metabolism LitPath 24 0.000 4 0.000

giberelin biosynthesis LitPath 24 0.000 4 0.000

Flavonoid and anthocyanin metabolism BioPath 22 0.000 4 0.000

Phenylpropanoid Metabolism BioPath 22 0.000 4 0.041

abscisic acid biosynthesis TAIR-GO 12 0.000 2 0.000

abscisic acid biosynthesis AraCyc 12 0.000 2 0.000

isoprenoid biosynthesis FunCat 12 0.001 2 0.063

lipid, fatty acid and isoprenoid biosynthesis FunCat 12 0.000 2 0.045

Stilbene, coumarine and lignin biosynthesis KEGG 12 0.000 2 0.008

abscisic acid biosynthesis LitPath 12 0.000 2 0.003

Carotenoid and abscisic acid metabolism LitPath 12 0.002 2 0.046

mono-/sesqui-/di-terpene biosynthesis LitPath 12 0.005 3 0.030

terpenoid metabolism LitPath 12 0.005 3 0.033


































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP81D6 / CYP81D7 (At2g23220 / At2g23190)







max. difference between log2-ratios: 1.2











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Cell Wall Carbohydrate Metabolism BioPath 16 0.000 5 0.001
pectin metabolism BioPath 12 0.000 4 0.000





























Pathways co-expressed in the Hormone etc. data set (with more than 15 annotation points)
CYP81D6 / CYP81D7 (At2g23220 / At2g23190)







max. difference between log2-ratios: 0.4











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Cell Wall Carbohydrate Metabolism BioPath 132 0.000 41 0.000





pectin metabolism BioPath 72 0.000 29 0.000




Ribosome KEGG 44 0.030 8 0.416




mono-/sesqui-/di-terpene biosynthesis LitPath 32 0.000 5 0.006




terpenoid metabolism LitPath 32 0.000 5 0.007




Fructose and mannose metabolism KEGG 30 0.000 5 0.003




Fatty acid elongation and wax and cutin metabolism AcylLipid 27 0.000 9 0.000




cellulose biosynthesis BioPath 26 0.000 5 0.018




nucleotide metabolism FunCat 24 0.000 6 0.000




Miscellaneous acyl lipid metabolism AcylLipid 22 0.028 9 0.160




(deoxy)ribose phosphate degradation AraCyc 20 0.000 4 0.000




biosynthesis of derivatives of homoisopentenyl pyrophosphate FunCat 20 0.000 2 0.024




pyrimidine nucleotide metabolism FunCat 20 0.000 4 0.001




Glycolysis / Gluconeogenesis KEGG 20 0.001 5 0.035










Nucleotide Metabolism KEGG 20 0.000 4 0.093










Pyrimidine metabolism KEGG 20 0.000 4 0.008










Flavonoid and anthocyanin metabolism BioPath 19 0.000 5 0.044










biogenesis of cell wall FunCat 18 0.002 7 0.005










transport FunCat 18 0.000 5 0.000










Starch and sucrose metabolism KEGG 18 0.010 6 0.009










hemicellulose biosynthesis BioPath 16 0.000 2 0.037










acetate fermentation AraCyc 16 0.000 4 0.030










fructose degradation (anaerobic) AraCyc 16 0.000 4 0.022










glycerol degradation II AraCyc 16 0.000 4 0.006










glycolysis IV AraCyc 16 0.000 4 0.024










non-phosphorylated glucose degradation AraCyc 16 0.000 4 0.001










sorbitol fermentation AraCyc 16 0.000 4 0.027










Glycan Biosynthesis and Metabolism KEGG 16 0.002 2 0.325










Glycerolipid metabolism KEGG 16 0.000 2 0.086





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP81D6 / CYP81D7 (At2g23220 / At2g23190)







max. difference between log2-ratios: 0.1











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






C-compound and carbohydrate metabolism FunCat 240 0.016 46 0.150



Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 217 0.000 28 0.000


Intermediary Carbon Metabolism BioPath 188 0.000 34 0.023


transport FunCat 154 0.000 29 0.000


Photosystems BioPath 150 0.010 19 0.254


biogenesis of chloroplast FunCat 140 0.000 21 0.000


protein synthesis FunCat 120 0.041 25 0.064


Carbon fixation KEGG 110 0.000 19 0.003


Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 102 0.021 12 0.206


Pyruvate metabolism KEGG 102 0.001 16 0.078


Chlorophyll biosynthesis and breakdown BioPath 100 0.000 12 0.001


chlorophyll and phytochromobilin metabolism LitPath 100 0.000 12 0.001


Glycolysis / Gluconeogenesis KEGG 97 0.005 17 0.077


Glutathione metabolism BioPath 96 0.006 14 0.134










transport facilitation FunCat 96 0.000 17 0.000










Oxidative phosphorylation KEGG 91 0.000 22 0.001










photosynthesis FunCat 86 0.000 13 0.005










Biosynthesis of steroids KEGG 85 0.006 9 0.224










chlorophyll biosynthesis AraCyc 80 0.000 10 0.188










Sulfur metabolism KEGG 79 0.000 10 0.000










additional photosystem II components BioPath 72 0.001 9 0.085










Glutamate metabolism KEGG 71 0.004 9 0.165



























page created by Juergen Ehlting 04/26/06