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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| Glutathione metabolism |
KEGG |
102 |
19 |
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| Glutathione metabolism |
BioPath |
100 |
18 |
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| toxin catabolism |
TAIR-GO |
90 |
33 |
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| camalexin biosynthesis |
AraCyc |
49 |
7 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| camalexin biosynthesis |
LitPath |
49 |
7 |
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| indole phytoalexin biosynthesis |
TAIR-GO |
28 |
4 |
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| Fluorene degradation |
KEGG |
28 |
4 |
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For more information on how these pathway maps were generated please read the methods page |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
28 |
4 |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) |
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CYP81D8 (At4g37370) |
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| max. difference between log2-ratios: |
6.3 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
4.7 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| Stilbene, coumarine and lignin biosynthesis |
KEGG |
17 |
0.000 |
2 |
0.002 |
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| toxin catabolism |
TAIR-GO |
14 |
0.000 |
3 |
0.000 |
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| Glutathione metabolism |
KEGG |
12 |
0.000 |
2 |
0.000 |
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| Biosynthesis of Amino Acids and Derivatives |
BioPath |
10 |
0.000 |
1 |
0.004 |
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| Glutathione metabolism |
BioPath |
10 |
0.000 |
1 |
0.001 |
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| indole phytoalexin biosynthesis |
TAIR-GO |
7 |
0.000 |
1 |
0.000 |
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| camalexin biosynthesis |
AraCyc |
7 |
0.000 |
1 |
0.000 |
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| Ascorbate and aldarate metabolism |
KEGG |
7 |
0.000 |
1 |
0.002 |
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| Fluorene degradation |
KEGG |
7 |
0.000 |
1 |
0.001 |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
7 |
0.000 |
1 |
0.001 |
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| camalexin biosynthesis |
LitPath |
7 |
0.000 |
1 |
0.000 |
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| Pathways co-expressed in the Stress data set ( with more than 20 annotation points) |
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CYP81D8 (At4g37370) |
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| max. difference between log2-ratios: |
9.6 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
5.1 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to stress heatmap |
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| Phenylpropanoid Metabolism |
BioPath |
112 |
0.000 |
17 |
0.000 |
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| Aromatic amino acid (Phe, Tyr, Trp) metabolism |
BioPath |
66 |
0.000 |
9 |
0.000 |
| Shikimate pathway |
LitPath |
62 |
0.000 |
9 |
0.000 |
| response to pathogenic bacteria |
TAIR-GO |
58 |
0.000 |
8 |
0.000 |
| tryptophan biosynthesis |
TAIR-GO |
58 |
0.000 |
8 |
0.000 |
| tryptophan biosynthesis |
AraCyc |
58 |
0.000 |
8 |
0.000 |
| Trp biosyntesis |
LitPath |
58 |
0.000 |
8 |
0.000 |
| Phenylalanine, tyrosine and tryptophan biosynthesis |
KEGG |
48 |
0.000 |
6 |
0.000 |
| Gluconeogenesis from lipids in seeds |
BioPath |
40 |
0.000 |
4 |
0.027 |
| lipid, fatty acid and isoprenoid degradation |
FunCat |
36 |
0.000 |
5 |
0.000 |
| toxin catabolism |
TAIR-GO |
34 |
0.000 |
13 |
0.000 |
| Degradation of storage lipids and straight fatty acids |
AcylLipid |
32 |
0.000 |
4 |
0.006 |
| Phenylpropanoid pathway |
LitPath |
32 |
0.005 |
6 |
0.088 |
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| Glucosyltransferases for benzoic acids |
BioPath |
30 |
0.000 |
3 |
0.000 |
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| Fatty acid metabolism |
KEGG |
30 |
0.000 |
3 |
0.009 |
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| Lipid signaling |
AcylLipid |
30 |
0.001 |
7 |
0.037 |
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| Cysteine metabolism |
KEGG |
24 |
0.000 |
3 |
0.004 |
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| Glutathione metabolism |
BioPath |
22 |
0.003 |
3 |
0.095 |
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| Alanine and aspartate metabolism |
KEGG |
22 |
0.000 |
3 |
0.006 |
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| Glutamate metabolism |
KEGG |
22 |
0.000 |
3 |
0.020 |
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| defense response |
TAIR-GO |
21 |
0.000 |
3 |
0.008 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 20 annotation points) |
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CYP81D8 (At4g37370) |
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| max. difference between log2-ratios: |
9.0 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.1 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| Phenylpropanoid Metabolism |
BioPath |
93 |
0.000 |
14 |
0.000 |
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| Lipid signaling |
AcylLipid |
50 |
0.000 |
13 |
0.002 |
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| response to pathogenic bacteria |
TAIR-GO |
48 |
0.000 |
7 |
0.000 |
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| Phenylpropanoid pathway |
LitPath |
44 |
0.000 |
7 |
0.016 |
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| Biosynthesis of Amino Acids and Derivatives |
BioPath |
42 |
0.006 |
6 |
0.145 |
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| Shikimate pathway |
LitPath |
42 |
0.000 |
7 |
0.000 |
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| tryptophan biosynthesis |
TAIR-GO |
38 |
0.000 |
6 |
0.000 |
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| tryptophan biosynthesis |
AraCyc |
38 |
0.000 |
6 |
0.000 |
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| Trp biosyntesis |
LitPath |
38 |
0.000 |
6 |
0.000 |
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| Aromatic amino acid (Phe, Tyr, Trp) metabolism |
BioPath |
36 |
0.000 |
6 |
0.000 |
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| Glucosyltransferases for benzoic acids |
BioPath |
30 |
0.000 |
3 |
0.000 |
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| lignin biosynthesis |
AraCyc |
30 |
0.000 |
5 |
0.001 |
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| Benzoate degradation via CoA ligation |
KEGG |
29 |
0.000 |
10 |
0.000 |
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| core phenylpropanoid metabolism |
BioPath |
26 |
0.000 |
4 |
0.006 |
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| biosynthesis of proto- and siroheme |
AraCyc |
26 |
0.000 |
4 |
0.005 |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
26 |
0.041 |
7 |
0.446 |
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| triacylglycerol degradation |
AraCyc |
25 |
0.000 |
6 |
0.001 |
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| jasmonic acid biosynthesis |
TAIR-GO |
24 |
0.000 |
4 |
0.001 |
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| jasmonic acid biosynthesis |
AraCyc |
24 |
0.000 |
4 |
0.000 |
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| Ion channels |
KEGG |
24 |
0.000 |
11 |
0.000 |
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| Ligand-Receptor Interaction |
KEGG |
24 |
0.000 |
11 |
0.000 |
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| ethylene biosynthesis |
TAIR-GO |
23 |
0.000 |
3 |
0.000 |
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| Glutathione metabolism |
BioPath |
22 |
0.002 |
3 |
0.107 |
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| toxin catabolism |
TAIR-GO |
22 |
0.000 |
11 |
0.000 |
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| Pathways co-expressed in the Mutant data set (with more than 15 annotation points) |
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CYP81D8 (At4g37370) |
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| max. difference between log2-ratios: |
9.5 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.9 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
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| response to pathogenic bacteria |
TAIR-GO |
56.5 |
0.000 |
8 |
0.000 |
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| Phenylpropanoid Metabolism |
BioPath |
50 |
0.000 |
7 |
0.008 |
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| tryptophan biosynthesis |
TAIR-GO |
44 |
0.000 |
6 |
0.000 |
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| tryptophan biosynthesis |
AraCyc |
44 |
0.000 |
6 |
0.000 |
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| Lipid signaling |
AcylLipid |
44 |
0.000 |
11 |
0.006 |
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| Shikimate pathway |
LitPath |
44 |
0.000 |
6 |
0.000 |
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| Trp biosyntesis |
LitPath |
44 |
0.000 |
6 |
0.000 |
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| Aromatic amino acid (Phe, Tyr, Trp) metabolism |
BioPath |
38 |
0.000 |
5 |
0.000 |
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| Biosynthesis of Amino Acids and Derivatives |
BioPath |
34 |
0.000 |
6 |
0.022 |
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| defense response |
TAIR-GO |
33.5 |
0.000 |
6 |
0.000 |
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| triacylglycerol degradation |
AraCyc |
25.5 |
0.000 |
6 |
0.000 |
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| response to wounding |
TAIR-GO |
24 |
0.000 |
4 |
0.000 |
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| Phenylalanine, tyrosine and tryptophan biosynthesis |
KEGG |
22 |
0.000 |
3 |
0.013 |
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| Methionin/SAM/ethylene metabolism from cysteine and aspartate |
BioPath |
20 |
0.000 |
3 |
0.002 |
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| toxin catabolism |
TAIR-GO |
20 |
0.000 |
6 |
0.000 |
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| gibberellic acid catabolism |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
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| C-compound and carbohydrate metabolism |
FunCat |
19 |
0.008 |
5 |
0.096 |
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| Benzoate degradation via CoA ligation |
KEGG |
18 |
0.000 |
8 |
0.000 |
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| Inositol phosphate metabolism |
KEGG |
18 |
0.000 |
8 |
0.000 |
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| Nicotinate and nicotinamide metabolism |
KEGG |
18 |
0.000 |
8 |
0.000 |
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| Propanoate metabolism |
KEGG |
18 |
0.000 |
3 |
0.004 |
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| jasmonic acid biosynthesis |
TAIR-GO |
16 |
0.000 |
3 |
0.002 |
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| jasmonic acid biosynthesis |
AraCyc |
16 |
0.000 |
3 |
0.000 |
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| lignin biosynthesis |
AraCyc |
16 |
0.000 |
2 |
0.021 |
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| lipoxygenase pathway |
AraCyc |
16 |
0.000 |
3 |
0.000 |
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