Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP81H1 (At4g37310) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are no co-expressed pathways common in all data sets



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 19 annotation points)
CYP81H1 (At4g37310)







max. difference between log2-ratios: 5.3











max. difference between log2-ratios excluding lowest and highest 5%: 4.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Photosystems BioPath 121 0.000 17 0.000


Photosynthesis KEGG 59 0.000 9 0.000

Photosystem I BioPath 57 0.000 9 0.000

Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 48 0.000 7 0.014

photosynthesis FunCat 47 0.000 8 0.000

photosystem I TAIR-GO 45 0.000 5 0.000

Carotenoid and abscisic acid metabolism LitPath 44 0.000 6 0.000

biogenesis of chloroplast FunCat 42 0.000 7 0.000

transport FunCat 41 0.000 5 0.000

photosystem II TAIR-GO 37 0.000 4 0.000

Carotenoid biosynthesis BioPath 34 0.000 4 0.000

Chlorophyll a/b binding proteins BioPath 34 0.000 4 0.001

carotenoid biosynthesis AraCyc 34 0.000 4 0.000










carotenid biosynthesis LitPath 34 0.000 4 0.000










additional photosystem II components BioPath 32 0.000 4 0.016










Biosynthesis of steroids KEGG 32 0.000 4 0.000










Photosystem II BioPath 31 0.000 4 0.016










Ascorbate and aldarate metabolism KEGG 29 0.000 3 0.000










Fluorene degradation KEGG 29 0.000 3 0.000










gamma-Hexachlorocyclohexane degradation KEGG 29 0.000 3 0.000










Stilbene, coumarine and lignin biosynthesis KEGG 29 0.000 3 0.050










Carbon fixation KEGG 25 0.000 3 0.013










photorespiration TAIR-GO 22 0.000 3 0.000










respiration FunCat 22 0.000 3 0.000










Fatty acid elongation and wax and cutin metabolism AcylLipid 21 0.000 3 0.028










Glucosyltransferases for benzoic acids BioPath 20 0.000 2 0.012










cytochrome b6f complex TAIR-GO 20 0.000 2 0.001










biosynthesis of phenylpropanoids FunCat 20 0.000 2 0.057










biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine FunCat 20 0.000 2 0.057










energy FunCat 20 0.000 3 0.000










Glucosinolate Metabolism LitPath 20 0.000 2 0.023












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP81H1 (At4g37310)







max. difference between log2-ratios: 6.8











max. difference between log2-ratios excluding lowest and highest 5%: 2.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






indoleacetic acid biosynthesis TAIR-GO 18 0.000 2 0.000
IAA biosynthesis AraCyc 18 0.000 2 0.000
IAA biosynthesis I AraCyc 18 0.000 2 0.000
plant / fungal specific systemic sensing and response FunCat 18 0.000 2 0.000










plant hormonal regulation FunCat 18 0.000 2 0.000










response to pathogenic bacteria TAIR-GO 9 0.000 1 0.000










Benzoate degradation via CoA ligation KEGG 9 0.000 1 0.021










Cyanoamino acid metabolism KEGG 9 0.000 1 0.002










Nitrogen metabolism KEGG 9 0.000 1 0.003










Tryptophan metabolism KEGG 9 0.000 1 0.003












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP81H1 (At4g37310)







max. difference between log2-ratios: 3.4











max. difference between log2-ratios excluding lowest and highest 5%: 1.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Gluconeogenesis from lipids in seeds BioPath 12 0.000 2 0.001





phenylalanine degradation I AraCyc 12 0.000 2 0.000




tyrosine degradation AraCyc 12 0.000 2 0.000




Phenylalanine metabolism KEGG 12 0.000 2 0.003




Tyrosine metabolism KEGG 12 0.000 2 0.000










Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 10 0.000 1 0.024










Tocopherol biosynthesis BioPath 10 0.000 1 0.000










carotenoid biosynthesis TAIR-GO 10 0.000 1 0.000










plastoquinone biosynthesis TAIR-GO 10 0.000 1 0.000










vitamin E biosynthesis TAIR-GO 10 0.000 1 0.000










fatty acid oxidation pathway AraCyc 10 0.000 1 0.003










octane oxidation AraCyc 10 0.000 1 0.001










plastoquinone biosynthesis AraCyc 10 0.000 1 0.000










vitamin E biosynthesis AraCyc 10 0.000 1 0.000










Fatty acid metabolism KEGG 10 0.000 1 0.005










Miscellaneous acyl lipid metabolism AcylLipid 10 0.000 1 0.000










Nucleotide Metabolism KEGG 9 0.000 1 0.026










Pyrimidine metabolism KEGG 9 0.000 1 0.007





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP81H1 (At4g37310)







max. difference between log2-ratios: 5.4











max. difference between log2-ratios excluding lowest and highest 5%: 2.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Fatty acid metabolism KEGG 33 0.000 4 0.000



fatty acid beta oxidation complex BioPath 29 0.000 3 0.000


Gluconeogenesis from lipids in seeds BioPath 29 0.000 3 0.004


leucine degradation I AraCyc 29 0.000 3 0.000


leucine degradation II AraCyc 29 0.000 3 0.000


Degradation of storage lipids and straight fatty acids AcylLipid 29 0.000 3 0.000


Tryptophan metabolism KEGG 25 0.000 4 0.000


Valine, leucine and isoleucine degradation KEGG 24 0.000 3 0.004


Bile acid biosynthesis KEGG 23 0.000 3 0.000


Benzoate degradation via CoA ligation KEGG 21 0.000 3 0.081


fatty acid beta-oxidation TAIR-GO 20 0.000 2 0.000


development TAIR-GO 19 0.000 2 0.014


fatty acid oxidation pathway AraCyc 19 0.000 2 0.000










isoleucine degradation I AraCyc 19 0.000 2 0.001










isoleucine degradation III AraCyc 19 0.000 2 0.000










indoleacetic acid biosynthesis TAIR-GO 18 0.000 2 0.000










IAA biosynthesis AraCyc 18 0.000 2 0.000










IAA biosynthesis I AraCyc 18 0.000 2 0.000










C-compound and carbohydrate metabolism FunCat 18 0.019 4 0.081










plant / fungal specific systemic sensing and response FunCat 18 0.000 2 0.001










plant hormonal regulation FunCat 18 0.000 2 0.001










Glycerolipid metabolism KEGG 17 0.000 3 0.003










Pyruvate metabolism KEGG 17 0.003 3 0.043










beta-Alanine metabolism KEGG 15 0.000 3 0.000










Lysine degradation KEGG 15 0.000 3 0.001










ATP-dependent proteolysis TAIR-GO 12 0.000 3 0.000










Glutathione metabolism KEGG 12 0.002 2 0.042










Tyrosine metabolism KEGG 11 0.003 2 0.037



























page created by Juergen Ehlting 06/27/06