| _________________________________________ |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) |
|
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
|
|
|
|
|
|
| Pathway |
Source |
Sum of scores |
Sum of genes |
|
|
|
|
|
|
|
| Biosynthesis of Amino Acids and Derivatives |
BioPath |
40 |
6 |
|
|
|
|
|
|
|
| Glutathione metabolism |
KEGG |
38 |
7 |
|
|
|
|
|
|
|
|
|
| glyoxylate cycle |
AraCyc |
20 |
2 |
|
|
|
|
|
|
|
|
|
| glyoxylate cycle |
AraCyc |
20 |
2 |
|
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
|
|
|
|
|
|
|
|
| Intermediary Carbon Metabolism |
BioPath |
20 |
3 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
For more information on how these pathway maps were generated please read the methods page |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) |
|
CYP81K1 (At5g10610) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
3.3 |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
1.9 |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
|
|
|
|
|
|
|
| Biosynthesis of Amino Acids and Derivatives |
BioPath |
24 |
0.000 |
4 |
0.000 |
|
|
|
| Glutathione metabolism |
BioPath |
24 |
0.000 |
4 |
0.000 |
|
|
| toxin catabolism |
TAIR-GO |
24 |
0.000 |
4 |
0.000 |
|
|
| Glutathione metabolism |
KEGG |
24 |
0.000 |
4 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| Intermediary Carbon Metabolism |
BioPath |
10 |
0.000 |
1 |
0.095 |
|
|
|
|
|
|
|
|
|
|
|
| response to stress |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| acetyl-CoA assimilation |
AraCyc |
10 |
0.000 |
1 |
0.006 |
|
|
|
|
|
|
|
|
|
|
|
| glyoxylate cycle |
AraCyc |
10 |
0.000 |
1 |
0.003 |
|
|
|
|
|
|
|
|
|
|
|
| leucine biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.002 |
|
|
|
|
|
|
|
|
|
|
|
| serine-isocitrate lyase pathway |
AraCyc |
10 |
0.000 |
1 |
0.012 |
|
|
|
|
|
|
|
|
|
|
|
| TCA cycle -- aerobic respiration |
AraCyc |
10 |
0.000 |
1 |
0.013 |
|
|
|
|
|
|
|
|
|
|
|
| TCA cycle variation VII |
AraCyc |
10 |
0.000 |
1 |
0.027 |
|
|
|
|
|
|
|
|
|
|
|
| TCA cycle variation VIII |
AraCyc |
10 |
0.000 |
1 |
0.014 |
|
|
|
|
|
|
|
|
|
|
|
| biosynthesis of phenylpropanoids |
FunCat |
10 |
0.000 |
1 |
0.003 |
|
|
|
|
|
|
|
|
|
|
|
| biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine |
FunCat |
10 |
0.000 |
1 |
0.003 |
|
|
|
|
|
|
|
|
|
|
|
| C-compound and carbohydrate glyoxylate cycle |
FunCat |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| glyoxylate cycle |
FunCat |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) |
FunCat |
10 |
0.000 |
1 |
0.026 |
|
|
|
|
|
|
|
|
|
|
|
| Citrate cycle (TCA cycle) |
KEGG |
10 |
0.000 |
1 |
0.005 |
|
|
|
|
|
|
|
|
|
|
|
| Glyoxylate and dicarboxylate metabolism |
KEGG |
10 |
0.000 |
1 |
0.002 |
|
|
|
|
|
|
|
|
|
|
|
| Reductive carboxylate cycle (CO2 fixation) |
KEGG |
10 |
0.000 |
1 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) |
|
CYP81K1 (At5g10610) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
3.1 |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
1.4 |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to stress heatmap |
|
|
|
|
|
|
|
| beta-Alanine metabolism |
KEGG |
17 |
0.000 |
3 |
0.000 |
|
| Biosynthesis of Amino Acids and Derivatives |
BioPath |
16 |
0.000 |
2 |
0.007 |
| Nucleotide Metabolism |
KEGG |
15 |
0.000 |
2 |
0.022 |
| Pantothenate and CoA biosynthesis |
KEGG |
15 |
0.000 |
2 |
0.000 |
| Pyrimidine metabolism |
KEGG |
15 |
0.000 |
2 |
0.004 |
| Glutathione metabolism |
KEGG |
14 |
0.000 |
3 |
0.000 |
| Fatty acid metabolism |
KEGG |
12 |
0.000 |
2 |
0.002 |
|
|
|
|
|
|
|
|
|
|
|
| Gluconeogenesis from lipids in seeds |
BioPath |
10 |
0.000 |
1 |
0.013 |
|
|
|
|
|
|
|
|
|
|
|
| Intermediary Carbon Metabolism |
BioPath |
10 |
0.000 |
2 |
0.006 |
|
|
|
|
|
|
|
|
|
|
|
| Prolin/Hydroxyproline from glutamate |
BioPath |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| peptidyl-proline hydroxylation to 4-hydroxy-L-proline |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| Degradation of storage lipids and straight fatty acids |
AcylLipid |
10 |
0.000 |
1 |
0.031 |
|
|
|
|
|
|
|
|
|
|
|
| detoxification |
FunCat |
7 |
0.000 |
2 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
