Co-Expression Analysis of:			CYP84A1, F5H, FAH1, CA5H (At4g36220)	Institut de Biologie Moléculaire des Plantes																																																																																																												_____________________________________________		____________________________________	____________________________________	____________________________________	____________________________________	____________________________________	____________________________________	____________________________________	____________________________________
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Hormones etc. Data Set			save / view heatmap as:		OpenOffice Table			annotation details for co-expressed genes can be found to the right of the heatmap
					MS Excel Table
			save / view all data as:		Tab delimited Table			For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets.
shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only)			magnitude of change [log2(treatment/control)]	0	0.3	0.6	0.9	1.2	1.5	1.8	2.1	2.4	2.7	>2.99
			greater than zero
			less than zero
Locus	r-value	Name	Description	ethylene, 3h, petiole (13)	mock, 30min, seedling (110)	IAA, 30min, seedling (110)	IAA, 1h, seedling (110)	IAA, 3h, seedling (110)	zeatin, 30min, seedling (110)	zeatin, 1h, seedling (110)	zeatin, 3h, seedling (110)	GA3, 30min, seedling (110)	GA3, 1h, seedling (110)	GA3, 3h, seedling (110)	ABA, 30min, seedling (110)	ABA, 1h, seedling (110)	ABA, 3h, seedling (110)	MJ, 30min, seedling (110)	MJ, 1h, seedling (110)	MJ, 3h, seedling (110)	ACC, 30min, seedling (110)	ACC, 1h, seedling (110)	ACC, 3h, seedling (110)	BL, 30min, seedling (110)	BL, 1h, seedling (110)	BL, 3h, seedling (110)	ABA, 3 uM, imbided seed (116)	ABA, 30 uM, imbided seed (116)	GA, 3h, imbibed seed (119)	GA, 6h, imbibed seed (119)	GA, 9h, imbibed seed (119)	GA, 3h, imbibed seed (134)	GA, 6h, imbibed seed (134)	GA, 9h, imbibed seed (134)	GA, 30min, whole plant (99)	GA, 60min, whole plant (99)	GA, 3h, whole plant (99)	IAA, 0.1uM, 1h, seedling (144)	IAA, 0.1uM, 3h, seedling (144)	IAA, 1uM, 1h, seedling (144)	IAA, 1uM, 3h, seedling (144)	ppi, 3h, seedling (113)	ppi, 12h, seedling (113)	uni, 3h, seedling (113)	uni, 12h, seedling (113)	brz220, 3h, seedling (113)	brz220, 12h, seedling (113)	brz91, 3h, seedling (113)	brz91, 12h, seedling (113)	pac, 3h, seedling (113)	pac, 12h, seedling (113)	px, 3h, seedling (113)	px, 12h, seedling (113)	pno8, 3h, seedling (113)	pno8, 12h, seedling (113)	ibup, 3h, seedling (113)	B9, 3h, seedling (113)	AgNO3, 3h, seedling (113)	AVG, 3h, seedling (113)	Sal, 3h, seedling (113)	MG132, 3h, seedling (113)	246T, 3h, seedling (113)	PCIB, 3h, seedling (113)	TIBA, 3h, seedling (113)	NPA, 3h, seedling (113)	CHX, 3h, seedling (113)	Colm, 3h, seedling (113)	ColPNO8, 3h, seedling (113)	ColBrz, 3h, seedling (113)	glucose, 8h, seedling (14)	sucrose, 8h, seedling (15)	deoxyglucose, 8h_seedling (14)	methylglucose, 8h, seedling (14)	K depleted, whole rosette (97)	K depleted, root (97)	Sulfate depleted, 2h, root (112)	Sulfate depleted, 4h, root (112)	Sulfate depleted, 8h, root (112)	Sulfate depleted, 12h, root (112)	Sulfate depleted, 24h, root (112)	mannitol, 8h, seedling (14)	CO2, 1000ppm, guard cell enriched (11)	CO2, 1000ppm, mature leaf (11)	CO2, high light, whole rosette (95)	CO2, medium light, whole rosette (95)	CO2, low light, whole rosette (95)	CO2, 2h, juvenile leaf (151)	CO2, 4h, juvenile leaf (151)	CO2, 6h, juvenile leaf (151)	CO2, 12h, juvenile leaf (151)	CO2, 24h, juvenile leaf (151)	CO2, 48h, juvenile leaf (151)	dark, 45min, seedling (109)	dark, 4h, seedling (109)	far red, 45min, seedling (109)	far red, 4h, seedling (109)	red pulse1, seedling (109)	red pulse2, seedling (109)	red, 45min, seedling (109)	red, 4h, seedling (109)	blue, 45min, seedling (109)	blue, 4h, seedling (109)	UV-A pulse1, seedling (109)	UV-A pulse2, seedling (109)	UV-AB pulse1, seedling (109)	UV-AB pulse2, seedling (109)	UV-A, 18h, mature leaf (72)	UV-B, 18h, mature leaf (72)	Locus	Probeset	Name	Description	Annotation score	GO.keywords	FunCat keywords	AraCyc annotations	KEGG annotations	BioPath annotations	AcylLipid category	Literature annotations	Gene family	90% quantile of DE	max. DE
At4g36220	1.000	FAH1, F5H, CYP84A1	encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.	0.47	0.07	1.37	0.07	0.07	0.85	0.82	0.88	0.07	1.46	0.07	0.79	1.51	0.07	0.99	0.99	2	0.89	0.07	0.07	0.07	0.07	1.03	0.48	0.62	-0.27	-1.18	-1.51	-0.27	-1.18	-1.51	0.19	-0.76	-0.88	-0.05	-0.74	-0.27	-0.59	0.08	0.48	-0.13	0.69	-0.4	0.63	-1.05	0.22	-0.23	0	0.39	0.04	-1.05	0.25	-0.27	-1.05	1.28	0.32	-1.05	-1.05	-1.05	-1.05	-1.05	-0.21	-1.05	-1.05	-1.05	-1.05	0.28	0.07	-1.17	-0.17	-0.24	-1.14	-0.03	-0.26	0.33	0.36	0.18	-0.57	-1.72	-0.55	0.55	-0.22	-0.28	-0.09	-0.06	0.25	0.75	0.1	-0.17	0.07	0.07	0.07	1.62	0.07	0.07	0.07	0.07	0.07	1.27	0.07	0.07	0.07	0.07	0.89	1.79	At4g36220	253088_at	FAH1, F5H, CYP84A1	encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis.	10	monooxygenase activity | ferulate 5-hydroxylase activity | lignin biosynthesis | phenylpropanoid biosynthesis	biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine | biosynthesis of phenylpropanoids | biogenesis of cell wall	lignin biosynthesis	Ascorbate and aldarate metabolism | Stilbene, coumarine and lignin biosynthesis | gamma-Hexachlorocyclohexane degradation | Fluorene degradation	Phenylpropanoid Metabolism | core phenylpropanoid metabolism		Phenylpropanoid pathway	cytochrome P450 family, 5-hydroxylase for coniferaldehyde, coniferyl alcohol and ferulic acid, phenylpropanoid metabolism	2.52	3.72
At3g05120	0.556		low similarity to PrMC3 (Pinus radiata)	-0.31	0.21	0.07	0.26	-0.47	-0.02	0.2	-0.2	0.06	0.09	-0.25	0.27	0.19	-0.75	0.57	0.9	1.12	0.14	0.28	0	0.19	0.61	0.18	0.47	0.67	-0.5	-1.11	-1.82	-0.5	-1.11	-1.82	0.01	-0.03	-0.19	-0.27	-0.27	-0.55	-0.82	-0.13	0.09	-0.03	0.28	-0.15	0.26	0.19	0.48	-0.06	0.07	-0.14	0.35	-0.14	0.27	0.11	-0.2	0.09	-0.07	-0.47	-0.32	-0.18	0.11	-0.76	0.13	-0.25	-0.4	-0.31	-0.33	-0.44	0.33	0.06	0.04	0.46	0.47	0.11	0.11	0.53	0.21	-0.13	0.08	-0.46	0.1	0.24	0.28	0.32	-0.04	0.07	0.44	0.13	0.24	0.27	0.28	0.34	0.26	0.2	0.17	0.19	0.25	0.25	-0.07	0.39	0.04	0.33	0.09	-0.17	0.06	-0.06	At3g05120	259302_at		low similarity to PrMC3 (Pinus radiata)	2								carboxylesterase	1.28	2.94
At4g13290	0.534	CYP71A19	cytochrome P450 family protein	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.33	2.63	2.85	3.2	4.09	6.08	0.33	0.33	0.33	0.33	1.63	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.33	-0.06	0.71	-0.14	0.22	-0.83	-1.27	-2	-2.17	0.33	0.08	0.33	-2.17	0.33	-2.17	0.33	-0.14	2.25	0.24	0.33	-2.17	2.42	-2.17	-2.17	0.56	0.25	-2.17	-2.17	-2.17	-0.37	-2.17	-0.53	-2.17	-2.17	-2.17	-2.17	-3.14	-1	-3.14	-3.14	0.33	1.19	0.59	0.14	-0.02	0.61	0.14	-3.14	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.33	0.25	0.72	0.27	0.11	0.32	0.65	0.32	0.31	0.05	0.41	0.74	1	0.14	-0.16	0.33	0.33	At4g13290	254767_s_at	CYP71A19	cytochrome P450 family protein	1								cytochrome P450 family	4.56	9.22
At1g49650	0.533		cell death associated protein-related, similar to PrMC3 (Pinus radiata); weak similarity to cell death associated protein (Nicotiana tabacum)	0.1	0.1	0.09	0.68	0.1	-0.07	0.62	0.1	0.06	0.71	0.1	-0.39	0.67	0.1	-0.39	0.1	1.82	-0.39	0.1	0.73	-0.39	0.1	0.83	0.69	0.44	0.51	0.23	-0.38	0.51	0.23	-0.38	0.08	-0.23	0.67	-0.28	-0.71	0.37	-0.13	-0.24	0.5	0.02	0.14	-0.47	0.4	-0.08	0.25	0.21	0.18	0.12	-0.04	-0.03	0.2	0.19	0.15	-0.7	0.28	-0.43	-0.79	-0.38	-1.35	-1.35	0.15	-1.35	-1.35	-1.35	-1.35	-0.22	-0.34	-1.38	-1.38	0.1	0.1	0.1	0.1	0.1	0.1	0.1	-0.42	0.1	0.1	0.22	-0.02	0.28	-0.08	-0.03	0.1	0.02	0.1	0.1	0.1	0.1	0.1	0.1	0.1	0.1	0.1	0.1	0.1	0.1	0.1	0.1	0.1	0.1	0.1	2.02	At1g49650	261608_at		cell death associated protein-related, similar to PrMC3 (Pinus radiata); weak similarity to cell death associated protein (Nicotiana tabacum)	2								carboxylesterase	2.04	3.42
page created by Juergen Ehlting			05/22/06