| Co-Expression Analysis of: | CYP84A1, F5H, FAH1, CA5H (At4g36220) | Institut de Biologie Moléculaire des Plantes |
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_____________________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ________________________ | _____________________________________________ | CYPedia Home | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mutant Data Set | save / view heatmap as: | OpenOffice Table | annotation details for co-expressed genes can be found to the right of the heatmap | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MS Excel Table | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| save / view all data as: | Tab delimited Table | For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) | magnitude of change [log2(mutant / wild type)] | 0 | 0.3 | 0.6 | 0.9 | 1.2 | 1.5 | 1.8 | 2.1 | 2.4 | 2.7 | >3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| greater than zero | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| less than zero | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Locus | r-value | Name | Description | 35S leafy, seedling (143) | aba1, fresh seeds (96) | abi1, fresh seeds (96) | abi3, fresh seeds (96) | acn1, seedlings (63) | acn1, seedlings, with sucrose (63) | add3, seedling (55) | ag12, shoot apex (89) | ag12, flower (89) | akt1, roots (141) | anr1, roots, dex treated, N03 depleted (64) | anr1, roots, not dex treated, N03 depleted (64) | anr1, roots, nitrate depleted (135) | ap1, shoot apex (89) | ap1, flower (89) | ap2, shoot apex (89) | ap2, flower (89) | ap3, shoot apex (89) | ap3, flower (89) | ape2, mature leaf, high light (68) | ape3, mature leaf, low light (68) | ARR22o, seedling (115) | ARR22o, seedling, zeatin (115) | ar4, whole plant (104) | bountifullo, juvenile leaf (48) | camta1, suspension cell (138) | camta1, seedling (138) | cdb1, seedling (137) | cdpk-yfp1, seedling (65) | cdpk-yfp4, seedling (65) | chs, juvenile leaf (67) | cir1-PR1-LUC, whole rosette (31) | cir1-ein2-PR-LUC, whole rosette (31) | cls8, seedling (76) | cls8, seedling, 4°C (76) | clv3, shoot apex (89) | clv3, flower (89) | cngc1, roots (141) | cngc4, roots (141) | co, apical region, vegetative (94) | co, apical region, reproductive, 3d (94) | co, apical region, reproductive, 5d (94) | co, apical region, reproductive, 7d (94) | coi1, senescing leaf (60) | cov, stem, base (66) | cov, stem, tip (66) | det2, seedling, mock, 30min (111) | det2, seedling, BL, 30min (111) | det2, seedling, mock, 1h (111) | det2, seedling, BL, 1h (111) | det2, seedling, mock, 3h (111) | det2, seedling, BL, 3h (111) | det2, seedling (131) | ein2, senescing leaf (60) | ein2-PR1-LUC, whole rosette (31) | etr1, whole plant, water (99) | etr1, whole plant, GA4, 60 min (99) | fls2, seedling, control (81) | fls2, seedling, flg22 (81) | ft, apical region, vegetative (94) | ft, apical region, reproductive, 3d (94) | ft, apical region, reproductive, 5d (94) | ft, apical region, reproductive, 7d (94) | fus, fresh seeds (96) | ga1, seedling, mock, 30min (111) | ga1, seedling, GA3, 30min (111) | ga1, seedling, mock, 1h (111) | ga1, seedling, GA3, 1h (111) | ga1, seedling, mock, 3h (111) | ga1, seedling, GA3, 3h (111) | ga1, seedling (131) | gl1, rosette leaf, stage 10 (88) | gl1, rosette leaf, stage 12 (88) | gpa1, seedling, ABA, 3h (75) | gpa1, seedling (75) | gun1-gun5, whole plant, Norflurazone (98) | hic, guard cell enriched (11) | hic, mature leaf (11) | hic, guard cell enriched, CO2 (11) | hic, mature leaf, CO2 (11) | iae1, hypocotyl (139) | iae2, hypocotyl (139) | icl2 (Col), seedling (28) | icl2 (Ws), seedling (28) | ir1, roots (142) | ku80, whole plant (57) | ku80, whole plant, bleomycin, 3d (57) | leafy-GR, seedling, de (143) | leafy-GR, seedling, de/cyc (143) | leafy-GR, seedling, cyc (143) | lfy, shoot apex (89) | lfy, flower (89) | lfy, apical region, vegetative (94) | lfy, apical region, reproductive, 3d (94) | lfy, apical region, reproductive, 5d (94) | lfy, apical region, reproductive, 7d (94) | ms1-ttg, flower bud, old (9) | ms1-ttg, flower bud, young (9) | myb61, seedling (15) | myb61, seedling, sucrose (15) | MYB61o, seedling (15) | MYB61o, seedling, sucrose (15) | nahG, senescing leaf (60) | o1, seedling (46) | o1, seedling, H202, 3h (46) | pasta2M1, mature leaf (150) | pho1, mature leaf (61) | pho3, leaf (27) | pmr4, mature leaf, Erysiphe cichoracearum (85) | pmr4, mature leaf (85) | RALF1o, seedling (152) | rbohB, seedling (59) | rbohB, seedling, 30°C, 1h (59) | rbohB, seedling, 40°C, 1h (59) | rbohC, root, elongation zone (79) | rdo, fresh seeds (96) | rhd2, lateral roots (29) | sfr2, whole rosette, 4°C (58) | sfr2, whole rosette (58) | sfr2-1, whole rosette, 4°C, 24h (12) | sfr2-1, whole rosette, 4°C, 24h (12) | sfr3, whole rosette, 4°C (58) | sfr3, whole rosette (58) | sfr6, whole rosette, 4°C (58) | sfr6, whole rosette (58) | sfr6, whole rosette, drought (58) | sfr6, seedling (76) | sfr6, seedling, 4°C (76) | sfr6, suspension cell, light (153) | sfr6, suspension cell, dark (153) | sph1, leaves, stage 5 (145) | sph1, leaves, stage 14 (145) | tcp13, flowers (100) | tcp14, flowers (100) | ttg, flower bud, old (9) | ttg, flower bud, young (9) | ufo1, shoot apex (89) | ufo1, flower (89) | gun1-gun5, seedling, far red then white light (83) | gun1-gun5, seedling, dark then white light (83) | zorro, seedlings, control, 2h (103) | zorro, seedlings, control 24h, (103) | zorro, seedlings, zearalenone, 2h (103) | zorro, seedlings, zearalenone, 24h (103) | Locus | Probeset | Name | Description | Annotation score | GO.keywords | FunCat keywords | AraCyc annotations | KEGG annotations | BioPath annotations | AcylLipid category | Literature annotations | Gene family | 90% quantile of DE | max. DE |
| At4g36220 | 1.000 | FAH1, F5H, CYP84A1 | encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. | 0.66 | -1.38 | -0.61 | -1.79 | 0.22 | 0 | 1.08 | 0.06 | -0.14 | 0.66 | 0.07 | 0.07 | 0.17 | -0.28 | -0.23 | -0.19 | -0.43 | 0.51 | -0.15 | -0.01 | -0.23 | 0.75 | 0.81 | 1.17 | 1.45 | -0.81 | -1 | 0 | 0.06 | 0.72 | -1.61 | 0.07 | 0.07 | 0.28 | 0.06 | -0.18 | -0.43 | -0.5 | 0.73 | 0.07 | 0.07 | 0.07 | 0.07 | -0.04 | -2.29 | 0.07 | 0.07 | 0.7 | 0.07 | 0.07 | 0.98 | -0.88 | 0.24 | 0.02 | 0.07 | -0.14 | 0.22 | 0.12 | 0.49 | 0.56 | 0.33 | 0.31 | 0.74 | -1.58 | 0.07 | 0.07 | 0.99 | -1.31 | 0.07 | 0.07 | -1.47 | -0.09 | 0.52 | 0.3 | 0.24 | 0.11 | -0.75 | -2.54 | 0.07 | -1.93 | -0.08 | -0.26 | 0.07 | 0.07 | 0.38 | 0.31 | 0.73 | 0.03 | -1.97 | -1.97 | 0.89 | 0.52 | 0.32 | 0.05 | 0.16 | 0.67 | 0.07 | 0.32 | 0.07 | 0.07 | 0.07 | 0.07 | -0.02 | 0.21 | 0.07 | 0.06 | 0.07 | 0.66 | -0.43 | 0.1 | -0.15 | 0.15 | -0.89 | 0.07 | 0.72 | -1.33 | 1.41 | -0.49 | -0.15 | -0.18 | -0.12 | -0.64 | -0.06 | -0.18 | 0.16 | 1.59 | -0.07 | -0.11 | 0.07 | 1.61 | 0.05 | 0.34 | 0.07 | 0.07 | 0.07 | 0.07 | 0.21 | -0.69 | -0.75 | -1.66 | 0.77 | 1.08 | 1.91 | 1.21 | At4g36220 | 253088_at | FAH1, F5H, CYP84A1 | encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. | 10 | monooxygenase activity | ferulate 5-hydroxylase activity | lignin biosynthesis | phenylpropanoid biosynthesis | biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine | biosynthesis of phenylpropanoids | biogenesis of cell wall | lignin biosynthesis | Ascorbate and aldarate metabolism | Stilbene, coumarine and lignin biosynthesis | gamma-Hexachlorocyclohexane degradation | Fluorene degradation | Phenylpropanoid Metabolism | core phenylpropanoid metabolism | Phenylpropanoid pathway | cytochrome P450 family, 5-hydroxylase for coniferaldehyde, coniferyl alcohol and ferulic acid, phenylpropanoid metabolism | 2.69 | 4.46 | |
| At5g38530 | 0.554 | low similarity to tryptophan synthases, beta subunit, from Lactococcus lactis, Pyrococcus kodakaraensi, Thermus thermophilus | 0.09 | -0.28 | 0.01 | -1.47 | -0.27 | -0.08 | 0.47 | 0.54 | 0.19 | -0.28 | -0.25 | 0.04 | 0.11 | -0.62 | 0.1 | -1.07 | -0.35 | 0.64 | 0.22 | -0.38 | -0.47 | 1.01 | 1.12 | 0.54 | 0.25 | -0.15 | -0.16 | 0.04 | -0.56 | -0.2 | -0.28 | 0.11 | -0.07 | 0.01 | -0.23 | -0.17 | -0.9 | -0.13 | -0.03 | -0.06 | -0.06 | -0.06 | -0.06 | -0.05 | -0.06 | -0.06 | -0.17 | 0 | 0.1 | 0.03 | -0.15 | -0.08 | -0.71 | 0.21 | 0.25 | 0.11 | 0.2 | -0.03 | 0.05 | 0.78 | 0.62 | 1 | 1.19 | -1.44 | 1.15 | 1 | 0.81 | 0.42 | 1.19 | 0.88 | -0.78 | -0.3 | 0.67 | 0.07 | -0.08 | 0.18 | -0.45 | -1.14 | -0.06 | -0.06 | -0.25 | -0.52 | -0.25 | 0.13 | -0.07 | 0.73 | 0.46 | -0.08 | -1.14 | -1.46 | 0.7 | 1.01 | 0.1 | 0.09 | 0.11 | 0.54 | -0.7 | 0.54 | 0.36 | -0.11 | 0.03 | 0.46 | -0.34 | -0.34 | -0.33 | 0.02 | -0.02 | 0.64 | -0.42 | 0.08 | -0.34 | -0.02 | 0.08 | 0.05 | 0.16 | -0.03 | 0.42 | 0.02 | 0.08 | 0.2 | 0.01 | 0 | 0.3 | -0.12 | 0.27 | -0.73 | 0.12 | 0.03 | -0.06 | 0.44 | -0.47 | 0.09 | -0.06 | -0.06 | -0.7 | -0.82 | -0.02 | -0.49 | -1.28 | -0.87 | 0.08 | 0.82 | 0.52 | 0.3 | At5g38530 | 249515_at | low similarity to tryptophan synthases, beta subunit, from Lactococcus lactis, Pyrococcus kodakaraensi, Thermus thermophilus | 2 | cysteine biosynthesis I | sulfate assimilation III | Phenylalanine, tyrosine and tryptophan biosynthesis | Phenylpropanoid Metabolism | Aromatic amino acid (Phe, Tyr, Trp) metabolism | 1.87 | 2.67 | |||||||
| At4g23100 | 0.509 | RML1 | encodes the first enzyme of glutathione (GSH) biosynthesis, gamma-glutamylcysteine synthetase. Required for cell proliferation at the root tip. | 0.08 | -0.06 | -0.12 | -0.89 | -0.02 | -0.16 | 0.18 | 0.17 | 0.15 | -0.23 | 0 | -0.11 | 0.03 | -0.25 | -0.31 | -0.01 | -0.07 | -0.03 | -0.07 | -0.4 | -0.02 | 0.37 | 0.64 | 0.11 | -0.37 | -0.02 | -0.26 | 0.11 | 0.19 | 0.09 | -0.28 | -0.28 | -0.67 | 0.05 | 0.25 | -0.1 | 0.08 | 0.08 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | -0.11 | -0.37 | -0.56 | -0.14 | -0.02 | 0.07 | 0.33 | -0.11 | 0.07 | -0.31 | -0.53 | -0.17 | 0.18 | 0.18 | -0.25 | 0.25 | 0.25 | 0.14 | 0.3 | 0.28 | -0.96 | -0.39 | -0.28 | -0.28 | -0.45 | -0.22 | -0.14 | -0.48 | -0.02 | -0.04 | 0.03 | 0.13 | -0.03 | -0.2 | -0.66 | -0.1 | -0.37 | 0.09 | -0.3 | 0.16 | 0.34 | 0.17 | 0.77 | 0.4 | -0.09 | -0.7 | -0.69 | 0.06 | -0.27 | -0.08 | 0.09 | 0.09 | 0.04 | 0.2 | 0.22 | -0.06 | -0.66 | 0.3 | 0.3 | 0.33 | -0.17 | -0.3 | 0.11 | 0.31 | 0.14 | -0.03 | 0 | -0.18 | -0.18 | -0.09 | -0.09 | 0.11 | 0.34 | 0.19 | 0.07 | 0.28 | -0.02 | -0.19 | 0.05 | 0.1 | 0.11 | 0.05 | 3.25 | 0.28 | 0.24 | 0.01 | 0.28 | -0.53 | -0.19 | 0.08 | 0.01 | 0.39 | 0.42 | 0.16 | 0.05 | -0.4 | -0.35 | 0.32 | 0.53 | 0.63 | 0.51 | At4g23100 | 254270_at | RML1 | encodes the first enzyme of glutathione (GSH) biosynthesis, gamma-glutamylcysteine synthetase. Required for cell proliferation at the root tip. | 10 | glutamate-cysteine ligase activity | glutathione biosynthesis | flower development | response to cadmium ion | biosynthesis of secondary products derived from primary amino acids | biosynthesis of nonprotein amino acids | glutathione biosynthesis | Glutamate metabolism | Glutathione metabolism | Biosynthesis of Amino Acids and Derivatives | Glutathione metabolism | 0.95 | 4.21 | |||
| page created by Juergen Ehlting | 05/22/06 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||