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| Pathways co-expressed in the 3 data sets with co-exressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| brassinosteroid biosynthesis |
TAIR-GO |
151 |
17 |
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| brassinosteroid biosynthesis |
BioPath |
142 |
16 |
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| brassinosteroid biosynthesis |
LitPath |
141 |
16 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
90 |
10 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| steroid biosynthesis |
TAIR-GO |
80 |
9 |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 9 annotation points) |
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CYP85A2, BR6OX2 (At3g30180) |
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| max. difference between log2-ratios: |
5.6 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.8 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| brassinosteroid biosynthesis |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
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| steroid biosynthesis |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
19 |
0.000 |
2 |
0.001 |
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| cuticle biosynthesis |
TAIR-GO |
18 |
0.000 |
3 |
0.000 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
18 |
0.000 |
3 |
0.004 |
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| wax biosynthesis |
TAIR-GO |
14 |
0.000 |
2 |
0.000 |
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| fatty acid metabolism |
TAIR-GO |
12 |
0.000 |
2 |
0.002 |
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| long-chain fatty acid metabolism |
TAIR-GO |
12 |
0.000 |
2 |
0.001 |
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| very-long-chain fatty acid metabolism |
TAIR-GO |
12 |
0.000 |
2 |
0.001 |
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| Stilbene, coumarine and lignin biosynthesis |
KEGG |
12 |
0.000 |
2 |
0.003 |
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| brassinosteroid biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.000 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
10 |
0.000 |
1 |
0.027 |
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| Leaf Glycerolipid Biosynthesis |
BioPath |
10 |
0.002 |
1 |
0.160 |
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| Leaf Glycerolipid Biosynthesis in Plastid |
BioPath |
10 |
0.000 |
1 |
0.022 |
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| growth |
TAIR-GO |
10 |
0.000 |
1 |
0.029 |
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| unidimensional cell growth |
TAIR-GO |
10 |
0.000 |
1 |
0.009 |
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| brassinosteroid biosynthesis I |
AraCyc |
10 |
0.000 |
1 |
0.002 |
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| brassinosteroid biosynthesis II |
AraCyc |
10 |
0.000 |
1 |
0.001 |
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| Ascorbate and aldarate metabolism |
KEGG |
10 |
0.000 |
1 |
0.003 |
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| Fluorene degradation |
KEGG |
10 |
0.000 |
1 |
0.001 |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.001 |
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| Synthesis of fatty acids in plastids |
AcylLipid |
10 |
0.000 |
1 |
0.097 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 9 annotation points) |
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CYP85A2, BR6OX2 (At3g30180) |
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| max. difference between log2-ratios: |
4.8 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
2.8 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
43 |
0.000 |
5 |
0.000 |
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| brassinosteroid biosynthesis |
TAIR-GO |
33 |
0.000 |
4 |
0.000 |
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| steroid biosynthesis |
TAIR-GO |
33 |
0.000 |
4 |
0.000 |
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| brassinosteroid biosynthesis |
LitPath |
33 |
0.000 |
4 |
0.000 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
30 |
0.000 |
3 |
0.000 |
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| growth |
TAIR-GO |
17 |
0.000 |
2 |
0.001 |
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| Ascorbate and aldarate metabolism |
KEGG |
17 |
0.000 |
2 |
0.000 |
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| Fluorene degradation |
KEGG |
17 |
0.000 |
2 |
0.000 |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
17 |
0.000 |
2 |
0.000 |
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| Stilbene, coumarine and lignin biosynthesis |
KEGG |
17 |
0.000 |
2 |
0.002 |
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| ascorbic acid biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.004 |
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| brassinosteroid biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.000 |
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| Protein prenylation |
BioPath |
10 |
0.000 |
1 |
0.000 |
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| sterol biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.006 |
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| sterol biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.011 |
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| unidimensional cell growth |
TAIR-GO |
10 |
0.000 |
1 |
0.005 |
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| ascorbate glutathione cycle |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| brassinosteroid biosynthesis I |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| brassinosteroid biosynthesis II |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| secondary metabolism |
FunCat |
10 |
0.000 |
1 |
0.005 |
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| protein prenylation |
LitPath |
10 |
0.000 |
1 |
0.014 |
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| sterol and brassinosteroid biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.022 |
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| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) |
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CYP85A2, BR6OX2 (At3g30180) |
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| max. difference between log2-ratios: |
4.7 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
2.0 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
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| brassinosteroid biosynthesis |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
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| steroid biosynthesis |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
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| brassinosteroid biosynthesis |
LitPath |
19 |
0.000 |
2 |
0.000 |
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| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
19 |
0.000 |
2 |
0.008 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
10 |
0.000 |
1 |
0.018 |
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| Leaf Glycerolipid Biosynthesis |
BioPath |
10 |
0.003 |
1 |
0.114 |
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| Leaf Glycerolipid Biosynthesis in cytosol / ER |
BioPath |
10 |
0.000 |
1 |
0.004 |
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| sterol biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.003 |
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| fatty acid desaturation |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| growth |
TAIR-GO |
10 |
0.000 |
1 |
0.006 |
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| response to light |
TAIR-GO |
10 |
0.000 |
1 |
0.014 |
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| unidimensional cell growth |
TAIR-GO |
10 |
0.000 |
1 |
0.002 |
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| phospholipid desaturation pathway |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| sterol biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| Synthesis of membrane lipids in endomembrane system |
AcylLipid |
10 |
0.000 |
1 |
0.009 |
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| sterol and brassinosteroid biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.004 |
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| wax biosynthesis |
TAIR-GO |
8 |
0.000 |
1 |
0.000 |
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| isoprenoid biosynthesis |
FunCat |
8 |
0.000 |
1 |
0.001 |
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| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
8 |
0.000 |
1 |
0.001 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
8 |
0.000 |
1 |
0.013 |
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