Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP86A4 (At1g01600)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
Fatty acid elongation and wax and cutin metabolism	AcylLipid	58	8
fatty acid metabolism	TAIR-GO	54	6
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP86A4 (At1g01600)
max. difference between log2-ratios:				3.6
max. difference between log2-ratios excluding lowest and highest 5%:				7.3
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Miscellaneous acyl lipid metabolism	AcylLipid	40	0.000	10	0.001
Fatty acid elongation and wax and cutin metabolism	AcylLipid	22	0.000	4	0.036
sexual reproduction	TAIR-GO	20	0.000	5	0.000
fatty acid metabolism	TAIR-GO	18	0.000	2	0.000
Cell Wall Carbohydrate Metabolism	BioPath	12	0.000	3	0.110
pectin metabolism	BioPath	12	0.000	3	0.008
Gluconeogenesis from lipids in seeds	BioPath	10	0.000	1	0.055
fatty acid oxidation pathway	AraCyc	10	0.000	1	0.002
octane oxidation	AraCyc	10	0.000	1	0.001
mono-/sesqui-/di-terpene biosynthesis	LitPath	10	0.000	1	0.037
sequiterpene biosynthesis	LitPath	10	0.000	1	0.000
terpenoid metabolism	LitPath	10	0.000	1	0.039
cellulose biosynthesis	AraCyc	8	0.000	2	0.001
cuticle biosynthesis	TAIR-GO	7	0.000	1	0.003
wax biosynthesis	TAIR-GO	7	0.000	1	0.001
epicuticular wax biosynthesis	AraCyc	7	0.000	1	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP86A4 (At1g01600)
max. difference between log2-ratios:				1.6
max. difference between log2-ratios excluding lowest and highest 5%:				3.5
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
fatty acid metabolism	TAIR-GO	9	0.000	1	0.000
Fatty acid elongation and wax and cutin metabolism	AcylLipid	9	0.000	1	0.000
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP86A4 (At1g01600)
max. difference between log2-ratios:				2.3
max. difference between log2-ratios excluding lowest and highest 5%:				3.8
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Miscellaneous acyl lipid metabolism	AcylLipid	22	0.000	3	0.048
Intermediary Carbon Metabolism	BioPath	20	0.000	2	0.001
Cell Wall Carbohydrate Metabolism	BioPath	10	0.001	1	0.080
UDP-carbohydrate metabolism	BioPath	10	0.000	1	0.000
acetyl-CoA biosynthesis	TAIR-GO	10	0.000	1	0.000
citrate lyase complex	TAIR-GO	10	0.000	1	0.000
sugar mediated signaling	TAIR-GO	10	0.000	1	0.000
C-compound and carbohydrate regulation of C-compound and carbohydrate utilization	FunCat	10	0.000	1	0.000
C-compound and carbohydrate utilization	FunCat	10	0.000	1	0.000
glycolysis and gluconeogenesis	FunCat	10	0.000	1	0.072
regulation of C-compound and carbohydrate utilization	FunCat	10	0.000	1	0.000
tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle)	FunCat	10	0.000	1	0.056
Citrate cycle (TCA cycle)	KEGG	10	0.000	1	0.003
fatty acid metabolism	TAIR-GO	9	0.000	1	0.002
Fatty acid elongation and wax and cutin metabolism	AcylLipid	9	0.005	1	0.144
Translation factors	KEGG	8	0.000	2	0.001
cellulose biosynthesis	AraCyc	6.5	0.000	2	0.001
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP86A4 (At1g01600)
max. difference between log2-ratios:				2.5
max. difference between log2-ratios excluding lowest and highest 5%:				4.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
fatty acid metabolism	TAIR-GO	18	0.000	2	0.000
Fatty acid elongation and wax and cutin metabolism	AcylLipid	18	0.000	2	0.000
page created by Alexandre OLRY	04/25/06