Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP86C4 (At1g13150)	save all data as Tab Delimited Table
_________________________________________
Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
There are no patways co-expressed in all data sets
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP86C4 (At1g13150)
max. difference between log2-ratios:				2.3
max. difference between log2-ratios excluding lowest and highest 5%:				5.3
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Miscellaneous acyl lipid metabolism	AcylLipid	42	0.000	15	0.001
Fatty acid elongation and wax and cutin metabolism	AcylLipid	34	0.000	8	0.002
fatty acid metabolism	TAIR-GO	26	0.000	4	0.000
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	22	0.000	4	0.000
sexual reproduction	TAIR-GO	20	0.000	5	0.000
Biosynthesis of prenyl diphosphates	BioPath	14	0.000	3	0.001
triacylglycerol degradation	AraCyc	14	0.000	6	0.000
polyisoprenoid biosynthesis	AraCyc	12	0.000	3	0.000
gibberellic acid catabolism	TAIR-GO	10	0.000	1	0.001
Diterpenoid biosynthesis	KEGG	10	0.000	1	0.000
Gibberellin metabolism	LitPath	10	0.000	1	0.024
giberelin catabolism	LitPath	10	0.000	1	0.000
prenyl diphosphate (GPP,FPP, GGPP) biosynthesis	LitPath	10	0.000	1	0.019
lignin biosynthesis	AraCyc	9	0.000	4	0.000
Phenylpropanoid pathway	LitPath	9	0.011	4	0.003
pectin metabolism	BioPath	8	0.000	2	0.149
ubiquinone biosynthesis	BioPath	8	0.000	1	0.000
cuticle biosynthesis	TAIR-GO	8	0.000	2	0.000
long-chain fatty acid metabolism	TAIR-GO	8	0.000	2	0.000
very-long-chain fatty acid metabolism	TAIR-GO	8	0.000	2	0.000
biosynthesis of proto- and siroheme	AraCyc	8	0.000	1	0.040
mevalonate pathway	AraCyc	8	0.000	1	0.009
metabolism of vitamins, cofactors, and prosthetic groups	FunCat	8	0.000	1	0.000
Ubiquinone biosynthesis	KEGG	8	0.000	1	0.000
ubiquinone biosynthesis	LitPath	8	0.000	1	0.001
suberin biosynthesis	AraCyc	7	0.000	3	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP86C4 (At1g13150)
max. difference between log2-ratios:				0.0
max. difference between log2-ratios excluding lowest and highest 5%:				2.9
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
Folding, Sorting and Degradation	KEGG	138	0.000	26	0.000
Proteasome	KEGG	138	0.000	26	0.000
protein catabolism	TAIR-GO	116	0.000	20	0.000
ubiquitin-dependent protein catabolism	TAIR-GO	116	0.000	20	0.000
proteasome core complex (sensu Eukaryota)	TAIR-GO	66	0.000	11	0.000
proteasome regulatory particle, base subcomplex (sensu Eukaryota)	TAIR-GO	38	0.000	6	0.000
Benzoate degradation via CoA ligation	KEGG	18	0.000	2	0.168
Inositol phosphate metabolism	KEGG	18	0.000	2	0.200
Nicotinate and nicotinamide metabolism	KEGG	18	0.000	2	0.141
cytoplasmic and nuclear protein degradation	FunCat	13	0.000	2	0.000
N-terminal protein myristoylation	TAIR-GO	9	0.000	1	0.045
phosphorylation	TAIR-GO	9	0.000	1	0.000
protein amino acid phosphorylation	TAIR-GO	9	0.000	1	0.009
calmodulin binding	TAIR-GO	7	0.001	1	0.061
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP86C4 (At1g13150)
max. difference between log2-ratios:				0.0
max. difference between log2-ratios excluding lowest and highest 5%:				3.4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones heatmap
Cell Wall Carbohydrate Metabolism	BioPath	81	0.000	18	0.000
pectin metabolism	BioPath	59	0.000	14	0.000
Starch and sucrose metabolism	KEGG	43	0.000	7	0.000
mono-/sesqui-/di-terpene biosynthesis	LitPath	30	0.000	3	0.000
terpenoid metabolism	LitPath	30	0.000	3	0.000
Miscellaneous acyl lipid metabolism	AcylLipid	20	0.000	7	0.000
sucrose metabolism	BioPath	16	0.000	2	0.002
Galactose metabolism	KEGG	16	0.000	2	0.000
C-compound and carbohydrate utilization	FunCat	14	0.000	2	0.000
sexual reproduction	TAIR-GO	12	0.000	3	0.000
monoterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.000
N-terminal protein myristoylation	TAIR-GO	10	0.000	1	0.002
monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
plant monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
monoterpene biosynthesis	LitPath	10	0.000	1	0.001
cellulose biosynthesis	AraCyc	8	0.000	2	0.000
lactose degradation IV	AraCyc	8	0.000	2	0.000
Oxidative phosphorylation	KEGG	8	0.000	2	0.006
Pentose and glucuronate interconversions	KEGG	8	0.000	2	0.000
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP86C4 (At1g13150)
max. difference between log2-ratios:				1.3
max. difference between log2-ratios excluding lowest and highest 5%:				5.9
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Cell Wall Carbohydrate Metabolism	BioPath	91	0.000	22	0.000
pectin metabolism	BioPath	75	0.000	19	0.000
Miscellaneous acyl lipid metabolism	AcylLipid	46	0.000	17	0.000
C-compound and carbohydrate metabolism	FunCat	40	0.000	12	0.006
Starch and sucrose metabolism	KEGG	33	0.000	6	0.000
Phenylpropanoid pathway	LitPath	29	0.000	6	0.000
biogenesis of cell wall	FunCat	28	0.000	9	0.000
Glycan Biosynthesis and Metabolism	KEGG	26	0.000	4	0.001
core phenylpropanoid metabolism	BioPath	22	0.000	3	0.025
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	20	0.001	3	0.073
sexual reproduction	TAIR-GO	20	0.000	5	0.000
glycolysis and gluconeogenesis	FunCat	16	0.024	4	0.126
Fatty acid elongation and wax and cutin metabolism	AcylLipid	15	0.009	5	0.103
Glutamate/glutamine from nitrogen fixation	BioPath	14	0.000	2	0.004
lactose degradation IV	AraCyc	14	0.000	4	0.000
assimilation of ammonia, metabolism of the glutamate group	FunCat	14	0.000	2	0.011
nitrogen and sulfur metabolism	FunCat	14	0.000	2	0.010
Glutamate metabolism	KEGG	14	0.000	2	0.017
Glycerolipid metabolism	KEGG	14	0.000	2	0.008
Nitrogen metabolism	KEGG	14	0.000	2	0.008
Oxidative phosphorylation	KEGG	14	0.000	3	0.014
Biosynthesis of prenyl diphosphates	BioPath	12	0.015	2	0.098
triacylglycerol degradation	AraCyc	12	0.000	5	0.000
Galactose metabolism	KEGG	12	0.000	2	0.007
cellulose biosynthesis	BioPath	10	0.013	2	0.103
gibberellic acid catabolism	TAIR-GO	10	0.000	1	0.001
ammonia assimilation cycle	AraCyc	10	0.000	1	0.009
glutamine biosynthesis I	AraCyc	10	0.000	1	0.005
nitrate assimilation pathway	AraCyc	10	0.000	1	0.011
polyisoprenoid biosynthesis	AraCyc	10	0.000	2	0.001
lipid, fatty acid and isoprenoid metabolism	FunCat	10	0.003	4	0.002
transport	FunCat	10	0.000	3	0.000
Diterpenoid biosynthesis	KEGG	10	0.000	1	0.010
Fructose and mannose metabolism	KEGG	10	0.001	2	0.021
Peptidoglycan biosynthesis	KEGG	10	0.000	1	0.002
Gibberellin metabolism	LitPath	10	0.000	1	0.034
giberelin catabolism	LitPath	10	0.000	1	0.000
prenyl diphosphate (GPP,FPP, GGPP) biosynthesis	LitPath	10	0.000	1	0.026
cytokinin catabolism	TAIR-GO	9	0.000	1	0.001
cytokinins degradation	AraCyc	9	0.000	1	0.001
lignin biosynthesis	AraCyc	9	0.001	4	0.001
hemicellulose biosynthesis	BioPath	8	0.000	1	0.060
ubiquinone biosynthesis	BioPath	8	0.000	1	0.004
cell wall organization and biogenesis (sensu Magnoliophyta)	TAIR-GO	8	0.000	1	0.000
cuticle biosynthesis	TAIR-GO	8	0.000	2	0.000
fatty acid metabolism	TAIR-GO	8	0.000	2	0.002
long-chain fatty acid metabolism	TAIR-GO	8	0.000	2	0.001
very-long-chain fatty acid metabolism	TAIR-GO	8	0.000	2	0.000
biosynthesis of proto- and siroheme	AraCyc	8	0.001	1	0.147
mevalonate pathway	AraCyc	8	0.000	1	0.038
page created by Alexandre OLRY	04/24/06