Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP87A2 (At1g12740) save all data as Tab Delimited Table










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Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are no co-expressed pathways common to the 2 data sets



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP87A2 (At1g12740)







max. difference between log2-ratios: 5.9











max. difference between log2-ratios excluding lowest and highest 5%: 4.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Cell Wall Carbohydrate Metabolism BioPath 12 0.000 2 0.068


GDP-carbohydrate biosynthesis BioPath 10 0.000 1 0.000

colanic acid building blocks biosynthesis AraCyc 10 0.000 1 0.005

dTDP-rhamnose biosynthesis AraCyc 10 0.000 1 0.003

galactose degradation I AraCyc 10 0.000 1 0.000










glucose conversion AraCyc 10 0.000 1 0.003










lactose degradation IV AraCyc 10 0.000 1 0.000










UDP-glucose conversion AraCyc 10 0.000 1 0.003










Fructose and mannose metabolism KEGG 10 0.000 1 0.005












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP87A2 (At1g12740)







max. difference between log2-ratios: 7.8











max. difference between log2-ratios excluding lowest and highest 5%: 1.9

















Link to stress heatmap






there are no co-expressed genes with more than 6 annotation points



















































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP87A2 (At1g12740)







max. difference between log2-ratios: 6.6











max. difference between log2-ratios excluding lowest and highest 5%: 3.5

















Link to hormones etc. heatmap






there are no co-expressed genes with more than 6 annotation points



































































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP87A2 (At1g12740)







max. difference between log2-ratios: 8.8











max. difference between log2-ratios excluding lowest and highest 5%: 3.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 10 0.000 1 0.000



Phenylpropanoid Metabolism BioPath 10 0.000 1 0.004


tryptophan biosynthesis TAIR-GO 10 0.000 1 0.000










tryptophan biosynthesis AraCyc 10 0.000 1 0.000










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 10 0.000 1 0.000










Shikimate pathway LitPath 10 0.000 1 0.019










Trp biosyntesis LitPath 10 0.000 1 0.003



























page created by Juergen Ehlting 05/12/06