| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP87A2 (At1g12740) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are no co-expressed pathways common to the 2 data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP87A2 (At1g12740) | |||||||||||||||
| max. difference between log2-ratios: | 5.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 4.0 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| Cell Wall Carbohydrate Metabolism | BioPath | 12 | 0.000 | 2 | 0.068 |
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| GDP-carbohydrate biosynthesis | BioPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| colanic acid building blocks biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.005 | |||||||||||
| dTDP-rhamnose biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.003 | |||||||||||
| galactose degradation I | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| glucose conversion | AraCyc | 10 | 0.000 | 1 | 0.003 | |||||||||||
| lactose degradation IV | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| UDP-glucose conversion | AraCyc | 10 | 0.000 | 1 | 0.003 | |||||||||||
| Fructose and mannose metabolism | KEGG | 10 | 0.000 | 1 | 0.005 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP87A2 (At1g12740) | |||||||||||||||
| max. difference between log2-ratios: | 7.8 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.9 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP87A2 (At1g12740) | |||||||||||||||
| max. difference between log2-ratios: | 6.6 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 3.5 | |||||||||||||||
| Link to hormones etc. heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP87A2 (At1g12740) | |||||||||||||||
| max. difference between log2-ratios: | 8.8 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 3.9 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to mutants heatmap | ||||||||||
| Aromatic amino acid (Phe, Tyr, Trp) metabolism | BioPath | 10 | 0.000 | 1 | 0.000 |
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| Phenylpropanoid Metabolism | BioPath | 10 | 0.000 | 1 | 0.004 | |||||||||||
| tryptophan biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| tryptophan biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Phenylalanine, tyrosine and tryptophan biosynthesis | KEGG | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Shikimate pathway | LitPath | 10 | 0.000 | 1 | 0.019 | |||||||||||
| Trp biosyntesis | LitPath | 10 | 0.000 | 1 | 0.003 | |||||||||||
| page created by Juergen Ehlting | 05/12/06 | |||||||||||||||