| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP88A3, KAO1 (At1g05160) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are co-expressed pathways in the organ data set only | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 9 annotation points) | CYP88A3, KAO1 (At1g05160) | |||||||||||||||
| max. difference between log2-ratios: | 4.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.1 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| Gibberellin metabolism | LitPath | 32 | 0.000 | 4 | 0.000 |
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| giberelin biosynthesis | LitPath | 32 | 0.000 | 4 | 0.000 | |||||||||||
| gibberellic acid biosynthesis | TAIR-GO | 20 | 0.000 | 2 | 0.000 | |||||||||||
| plant / fungal specific systemic sensing and response | FunCat | 20 | 0.000 | 2 | 0.001 | |||||||||||
| plant hormonal regulation | FunCat | 20 | 0.000 | 2 | 0.001 | |||||||||||
| Diterpenoid biosynthesis | KEGG | 20 | 0.000 | 2 | 0.000 | |||||||||||
| Cell Wall Carbohydrate Metabolism | BioPath | 12 | 0.000 | 2 | 0.068 | |||||||||||
| abscisic acid biosynthesis | TAIR-GO | 12 | 0.000 | 2 | 0.000 | |||||||||||
| abscisic acid biosynthesis | AraCyc | 12 | 0.000 | 2 | 0.000 | |||||||||||
| Stilbene, coumarine and lignin biosynthesis | KEGG | 12 | 0.000 | 2 | 0.005 | |||||||||||
| abscisic acid biosynthesis | LitPath | 12 | 0.000 | 2 | 0.000 | |||||||||||
| Carotenoid and abscisic acid metabolism | LitPath | 12 | 0.000 | 2 | 0.007 | |||||||||||
| sucrose metabolism | BioPath | 10 | 0.000 | 1 | 0.001 | |||||||||||
| gibberellic acid mediated signaling | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| microsome | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| oxygen binding | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| response to hypoxia | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| gibberellin biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.001 | |||||||||||
| sucrose biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.003 | |||||||||||
| sucrose degradation III | AraCyc | 10 | 0.000 | 1 | 0.002 | |||||||||||
| biosynthesis of derivatives of homoisopentenyl pyrophosphate | FunCat | 10 | 0.000 | 1 | 0.009 | |||||||||||
| glycolysis and gluconeogenesis | FunCat | 10 | 0.039 | 1 | 0.312 | |||||||||||
| secondary metabolism | FunCat | 10 | 0.000 | 1 | 0.113 | |||||||||||
| Ascorbate and aldarate metabolism | KEGG | 10 | 0.000 | 1 | 0.003 | |||||||||||
| Fluorene degradation | KEGG | 10 | 0.000 | 1 | 0.001 | |||||||||||
| gamma-Hexachlorocyclohexane degradation | KEGG | 10 | 0.000 | 1 | 0.002 | |||||||||||
| Starch and sucrose metabolism | KEGG | 10 | 0.000 | 1 | 0.029 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP88A3, KAO1 (At1g05160) | |||||||||||||||
| max. difference between log2-ratios: | 2.5 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.0 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 9 annotation points) | CYP88A3, KAO1 (At1g05160) | |||||||||||||||
| max. difference between log2-ratios: | 1.3 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.7 | |||||||||||||||
| Link to hormones etc. heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| Pathways co-expressed in the Mutant data set (with more than 30 annotation points) | CYP88A3, KAO1 (At1g05160) | |||||||||||||||
| max. difference between log2-ratios: | 1.4 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.1 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| page created by Juergen Ehlting | 05/22/06 | |||||||||||||||