Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP89A3 (At5g61320) save all data as Tab Delimited Table










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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















There are no co-expressed patways common to the 3 data sets



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP89A3 (At5g61320)







max. difference between log2-ratios: 3.6











max. difference between log2-ratios excluding lowest and highest 5%: 1.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Miscellaneous acyl lipid metabolism AcylLipid 36 0.000 12 0.000










sexual reproduction TAIR-GO 20 0.000 5 0.000


Biosynthesis of prenyl diphosphates BioPath 14 0.000 3 0.000

Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 14 0.000 3 0.000

prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 10 0.000 1 0.004

triacylglycerol degradation AraCyc 8 0.000 3 0.000










































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP89A3 (At5g61320)







max. difference between log2-ratios: 5.9











max. difference between log2-ratios excluding lowest and highest 5%: 1.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Folding, Sorting and Degradation KEGG 150 0.000 29 0.000
Proteasome KEGG 150 0.000 29 0.000
protein catabolism TAIR-GO 128 0.000 23 0.000
ubiquitin-dependent protein catabolism TAIR-GO 128 0.000 23 0.000
proteasome core complex (sensu Eukaryota) TAIR-GO 72 0.000 12 0.000
proteasome regulatory particle, base subcomplex (sensu Eukaryota) TAIR-GO 38 0.000 6 0.000
Benzoate degradation via CoA ligation KEGG 18 0.000 2 0.197
Inositol phosphate metabolism KEGG 18 0.000 2 0.233
Nicotinate and nicotinamide metabolism KEGG 18 0.000 2 0.166
cytoplasmic and nuclear protein degradation FunCat 13 0.000 2 0.000










N-terminal protein myristoylation TAIR-GO 9 0.000 1 0.055










phosphorylation TAIR-GO 9 0.000 1 0.000










protein amino acid phosphorylation TAIR-GO 9 0.000 1 0.011










calmodulin binding TAIR-GO 7 0.001 1 0.074












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP89A3 (At5g61320)







max. difference between log2-ratios: 3.4











max. difference between log2-ratios excluding lowest and highest 5%: 1.8

















Link to hormones etc. heatmap






There are no co-expressed pathways with r-value greater than 0.5 in this data set









































































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP89A3 (At5g61320)







max. difference between log2-ratios: 7.0











max. difference between log2-ratios excluding lowest and highest 5%: 1.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Phenylpropanoid Metabolism BioPath 78 0.000 12 0.000



Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 52 0.000 8 0.000


Shikimate pathway LitPath 52 0.000 8 0.000


tryptophan biosynthesis TAIR-GO 48 0.000 7 0.000


tryptophan biosynthesis AraCyc 48 0.000 7 0.000


Trp biosyntesis LitPath 48 0.000 7 0.000


Phenylpropanoid pathway LitPath 46 0.000 8 0.014


Biosynthesis of Amino Acids and Derivatives BioPath 38 0.001 5 0.161


response to pathogenic bacteria TAIR-GO 38 0.000 6 0.000


lignin biosynthesis AraCyc 30 0.000 5 0.000


core phenylpropanoid metabolism BioPath 26 0.000 4 0.003


Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 26 0.000 3 0.004


biosynthesis of proto- and siroheme AraCyc 24 0.000 3 0.007


biogenesis of chloroplast FunCat 24 0.000 3 0.029


Lipid signaling AcylLipid 24 0.002 9 0.012










Benzoate degradation via CoA ligation KEGG 23 0.000 8 0.000










Inositol phosphate metabolism KEGG 23 0.000 8 0.001










Nicotinate and nicotinamide metabolism KEGG 23 0.000 8 0.000










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 22 0.000 3 0.024










Propanoate metabolism KEGG 22 0.000 3 0.007










Chlorophyll biosynthesis and breakdown BioPath 20 0.000 2 0.036










Porphyrin and chlorophyll metabolism KEGG 20 0.000 2 0.031










chlorophyll and phytochromobilin metabolism LitPath 20 0.041 2 0.238










Nucleotide sugars metabolism KEGG 18 0.000 5 0.000










ethylene biosynthesis TAIR-GO 16 0.000 2 0.000










C-compound and carbohydrate utilization FunCat 16 0.000 3 0.000










secondary metabolism FunCat 16 0.000 3 0.027










Synthesis of membrane lipids in endomembrane system AcylLipid 16 0.000 3 0.120










chlorophyll biosynthesis AraCyc 14 0.000 2 0.073










fructose degradation (anaerobic) AraCyc 14 0.000 3 0.030










sorbitol fermentation AraCyc 14 0.001 3 0.034










Stilbene, coumarine and lignin biosynthesis KEGG 13 0.023 3 0.249










toxin catabolism TAIR-GO 12 0.000 6 0.000










flavonoid biosynthesis AraCyc 12 0.000 2 0.013










Alanine and aspartate metabolism KEGG 12 0.000 2 0.044










beta-Alanine metabolism KEGG 12 0.000 2 0.014










Butanoate metabolism KEGG 12 0.000 2 0.025










Cysteine metabolism KEGG 12 0.000 3 0.005










Glutamate metabolism KEGG 12 0.011 2 0.097










Taurine and hypotaurine metabolism KEGG 12 0.000 2 0.000










defense response TAIR-GO 11 0.000 2 0.007



























page created by Alexandre OLRY 07/07/06