Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP89A4 (At2g12190)	save all data as Tab Delimited Table
_________________________________________
Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are co-expressed pathways in only 1 data set
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP89A4 (At2g12190)
max. difference between log2-ratios:				3.2
max. difference between log2-ratios excluding lowest and highest 5%:				1.0
						Link to organ heatmap
there are no genes co-expressed with r>0.5
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP89A4 (At2g12190)
max. difference between log2-ratios:				2.6
max. difference between log2-ratios excluding lowest and highest 5%:				0.7
						Link to stress heatmap
there are no genes co-expressed with r>0.5
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP89A4 (At2g12190)
max. difference between log2-ratios:				1.4
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Phenylpropanoid Metabolism	BioPath	21	0.000	3	0.008
core phenylpropanoid metabolism	BioPath	20	0.000	2	0.001
Phenylpropanoid pathway	LitPath	20	0.000	2	0.006
amino acid metabolism	FunCat	16	0.000	2	0.004
Alkaloid biosynthesis I	KEGG	12	0.000	2	0.000
Phenylalanine metabolism	KEGG	12	0.000	2	0.024
Tyrosine metabolism	KEGG	12	0.000	2	0.003
Biosynthesis of Amino Acids and Derivatives	BioPath	10	0.013	2	0.043
Glutathione metabolism	BioPath	10	0.000	2	0.004
defense response	TAIR-GO	10	0.000	1	0.005
hypersensitive response	TAIR-GO	10	0.000	1	0.000
phenylpropanoid biosynthesis	TAIR-GO	10	0.000	1	0.000
response to bacteria	TAIR-GO	10	0.000	1	0.000
response to wounding	TAIR-GO	10	0.000	1	0.006
lignin biosynthesis	AraCyc	10	0.000	1	0.028
mixed acid fermentation	AraCyc	10	0.000	1	0.018
phenylpropanoid pathway, initial reactions	AraCyc	10	0.000	1	0.000
salicylic acid biosynthesis	AraCyc	10	0.000	1	0.001
sorbitol fermentation	AraCyc	10	0.000	1	0.059
suberin biosynthesis	AraCyc	10	0.000	1	0.005
biogenesis of cell wall	FunCat	10	0.000	1	0.017
biosynthesis of phenylpropanoids	FunCat	10	0.000	1	0.005
biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine	FunCat	10	0.000	1	0.005
metabolism of the cysteine - aromatic group	FunCat	10	0.000	1	0.000
Alkaloid biosynthesis II	KEGG	10	0.000	1	0.001
Nitrogen metabolism	KEGG	10	0.000	1	0.022
photosystem I	TAIR-GO	9	0.000	1	0.001
photosystem II	TAIR-GO	9	0.000	1	0.000
photosystem II (sensu Viridiplantae)	TAIR-GO	9	0.000	1	0.000
proteolysis and peptidolysis	TAIR-GO	9	0.000	1	0.000
response to light	TAIR-GO	9	0.000	1	0.017
response to light intensity	TAIR-GO	9	0.000	1	0.000
Folding, Sorting and Degradation	KEGG	9	0.004	1	0.179
Protein folding and associated processing	KEGG	9	0.000	1	0.015
Cysteine metabolism	KEGG	8	0.000	2	0.001
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP89A4 (At2g12190)
max. difference between log2-ratios:				3.3
max. difference between log2-ratios excluding lowest and highest 5%:				0.9
						Link to mutants heatmap
there are no genes co-expressed with more than 6 annotation points
page created by Vincent Sauveplane	07/07/06