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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| Biosynthesis of prenyl diphosphates |
BioPath |
20 |
2 |
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| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) |
BioPath |
20 |
2 |
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| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis |
LitPath |
20 |
2 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 7 annotation points) |
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CYP89A7 / CYP89A4 (At1g64930 / At2G12190) |
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| max. difference between log2-ratios: |
3.8 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
0.0 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| cellulose biosynthesis |
BioPath |
12 |
0.000 |
2 |
0.005 |
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| nucleotide metabolism |
FunCat |
12 |
0.000 |
2 |
0.000 |
| purine nucleotide metabolism |
FunCat |
12 |
0.000 |
2 |
0.001 |
| Phosphatidylinositol signaling system |
KEGG |
11 |
0.000 |
2 |
0.002 |
| Signal Transduction |
KEGG |
11 |
0.000 |
2 |
0.002 |
| pectin metabolism |
BioPath |
10.5 |
0.001 |
3 |
0.027 |
| Biosynthesis of prenyl diphosphates |
BioPath |
10 |
0.000 |
1 |
0.046 |
| Glucosyltransferases for benzoic acids |
BioPath |
10 |
0.000 |
1 |
0.004 |
| Methionin/SAM/ethylene metabolism from cysteine and aspartate |
BioPath |
10 |
0.000 |
2 |
0.002 |
| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) |
BioPath |
10 |
0.012 |
1 |
0.139 |
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| C-compound and carbohydrate utilization |
FunCat |
10 |
0.000 |
1 |
0.000 |
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| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.009 |
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| gibberellic acid biosynthesis |
TAIR-GO |
9 |
0.000 |
1 |
0.000 |
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| gibberellin biosynthesis |
AraCyc |
9 |
0.000 |
1 |
0.002 |
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| hemicellulose biosynthesis |
BioPath |
8 |
0.000 |
1 |
0.007 |
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| secondary metabolism |
FunCat |
8 |
0.000 |
2 |
0.014 |
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| Fructose and mannose metabolism |
KEGG |
8 |
0.000 |
1 |
0.042 |
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| Glycan Biosynthesis and Metabolism |
KEGG |
8 |
0.000 |
1 |
0.074 |
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| Glycerolipid metabolism |
KEGG |
8 |
0.000 |
1 |
0.023 |
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| Lipid signaling |
AcylLipid |
8 |
0.000 |
2 |
0.015 |
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| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) |
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CYP89A7 / CYP89A4 (At1g64930 / At2G12190) |
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| max. difference between log2-ratios: |
3.8 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
0.0 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
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| Biosynthesis of prenyl diphosphates |
BioPath |
10 |
0.000 |
1 |
0.005 |
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| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) |
BioPath |
10 |
0.000 |
1 |
0.018 |
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| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.000 |
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