| Co-Expression Analysis of: | CYP90C1, ROT3 (At4g36380) | Institut de Biologie Moléculaire des Plantes |
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| ________________________ | _____________________________________________ | CYPedia Home | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Hormones etc. Data Set | save / view heatmap as: | OpenOffice Table | annotation details for co-expressed genes can be found to the right of the heatmap | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MS Excel Table | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| save / view all data as: | Tab delimited Table | For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) | magnitude of change [log2(treatment/control)] | 0 | 0.3 | 0.6 | 0.9 | 1.2 | 1.5 | 1.8 | 2.1 | 2.4 | 2.7 | >2.99 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| greater than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| less than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Locus | r-value | Name | Description | ethylene, 3h, petiole (13) | mock, 30min, seedling (110) | IAA, 30min, seedling (110) | IAA, 1h, seedling (110) | IAA, 3h, seedling (110) | zeatin, 30min, seedling (110) | zeatin, 1h, seedling (110) | zeatin, 3h, seedling (110) | GA3, 30min, seedling (110) | GA3, 1h, seedling (110) | GA3, 3h, seedling (110) | ABA, 30min, seedling (110) | ABA, 1h, seedling (110) | ABA, 3h, seedling (110) | MJ, 30min, seedling (110) | MJ, 1h, seedling (110) | MJ, 3h, seedling (110) | ACC, 30min, seedling (110) | ACC, 1h, seedling (110) | ACC, 3h, seedling (110) | BL, 30min, seedling (110) | BL, 1h, seedling (110) | BL, 3h, seedling (110) | ABA, 3 uM, imbided seed (116) | ABA, 30 uM, imbided seed (116) | GA, 3h, imbibed seed (119) | GA, 6h, imbibed seed (119) | GA, 9h, imbibed seed (119) | GA, 3h, imbibed seed (134) | GA, 6h, imbibed seed (134) | GA, 9h, imbibed seed (134) | GA, 30min, whole plant (99) | GA, 60min, whole plant (99) | GA, 3h, whole plant (99) | IAA, 0.1uM, 1h, seedling (144) | IAA, 0.1uM, 3h, seedling (144) | IAA, 1uM, 1h, seedling (144) | IAA, 1uM, 3h, seedling (144) | ppi, 3h, seedling (113) | ppi, 12h, seedling (113) | uni, 3h, seedling (113) | uni, 12h, seedling (113) | brz220, 3h, seedling (113) | brz220, 12h, seedling (113) | brz91, 3h, seedling (113) | brz91, 12h, seedling (113) | pac, 3h, seedling (113) | pac, 12h, seedling (113) | px, 3h, seedling (113) | px, 12h, seedling (113) | pno8, 3h, seedling (113) | pno8, 12h, seedling (113) | ibup, 3h, seedling (113) | B9, 3h, seedling (113) | AgNO3, 3h, seedling (113) | AVG, 3h, seedling (113) | Sal, 3h, seedling (113) | MG132, 3h, seedling (113) | 246T, 3h, seedling (113) | PCIB, 3h, seedling (113) | TIBA, 3h, seedling (113) | NPA, 3h, seedling (113) | CHX, 3h, seedling (113) | Colm, 3h, seedling (113) | ColPNO8, 3h, seedling (113) | ColBrz, 3h, seedling (113) | glucose, 8h, seedling (14) | sucrose, 8h, seedling (15) | deoxyglucose, 8h_seedling (14) | methylglucose, 8h, seedling (14) | K depleted, whole rosette (97) | K depleted, root (97) | Sulfate depleted, 2h, root (112) | Sulfate depleted, 4h, root (112) | Sulfate depleted, 8h, root (112) | Sulfate depleted, 12h, root (112) | Sulfate depleted, 24h, root (112) | mannitol, 8h, seedling (14) | CO2, 1000ppm, guard cell enriched (11) | CO2, 1000ppm, mature leaf (11) | CO2, high light, whole rosette (95) | CO2, medium light, whole rosette (95) | CO2, low light, whole rosette (95) | CO2, 2h, juvenile leaf (151) | CO2, 4h, juvenile leaf (151) | CO2, 6h, juvenile leaf (151) | CO2, 12h, juvenile leaf (151) | CO2, 24h, juvenile leaf (151) | CO2, 48h, juvenile leaf (151) | dark, 45min, seedling (109) | dark, 4h, seedling (109) | far red, 45min, seedling (109) | far red, 4h, seedling (109) | red pulse1, seedling (109) | red pulse2, seedling (109) | red, 45min, seedling (109) | red, 4h, seedling (109) | blue, 45min, seedling (109) | blue, 4h, seedling (109) | UV-A pulse1, seedling (109) | UV-A pulse2, seedling (109) | UV-AB pulse1, seedling (109) | UV-AB pulse2, seedling (109) | UV-A, 18h, mature leaf (72) | UV-B, 18h, mature leaf (72) | Locus | Probeset | Name | Description | Annotation score | GO.keywords | FunCat keywords | AraCyc annotations | KEGG annotations | BioPath annotations | AcylLipid category | Literature annotations | Gene family | 90% quantile of DE | max. DE |
| At4g36380 | 1.000 | ROT3, CYP90C1 | Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in th | -0.26 | 0.01 | -0.05 | -0.73 | -0.75 | -0.23 | -0.28 | -0.21 | -0.24 | -0.2 | 0.18 | -0.19 | -0.59 | 0.12 | -0.24 | -0.37 | 0.47 | -0.39 | -0.38 | 0.12 | -0.49 | -0.88 | -0.76 | 0.06 | 0.18 | 0.31 | 0.33 | 0.35 | 0.31 | 0.33 | 0.35 | -0.25 | -0.5 | 0.3 | -0.45 | -0.15 | -0.72 | -0.43 | 0.39 | 0.61 | 0.27 | 0.59 | 0.54 | 0.81 | 0.31 | 0.64 | 0.53 | 0.75 | 0.26 | 0.57 | -0.19 | 0.23 | 0.07 | 0.27 | 0.16 | 0.35 | -0.11 | 0.02 | -0.15 | -0.03 | -0.91 | 0.46 | -0.4 | 0.41 | -0.31 | 0.7 | 0.22 | 0.06 | 0.25 | 0.6 | 0.52 | -0.33 | -0.11 | -0.18 | -0.22 | 0.09 | -0.33 | 0.41 | 0.33 | -0.85 | 0.01 | 0.01 | 0.43 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | -0.07 | 0.08 | -0.33 | 0.12 | 0.22 | -0.01 | -0.19 | 0.09 | 0.04 | 0.02 | 0.35 | 0.05 | -0.13 | -0.11 | -0.21 | -0.22 | -1.25 | At4g36380 | 246216_at | ROT3, CYP90C1 | Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in th | 7 | brassinosteroid biosynthesis | leaf morphogenesis | monopolar cell growth | steroid hydroxylase activity | biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine | biosynthesis of phenylpropanoids | Ascorbate and aldarate metabolism | Stilbene, coumarine and lignin biosynthesis | gamma-Hexachlorocyclohexane degradation | Fluorene degradation | triterpene, sterol, and brassinosteroid metabolism | brassinosteroid biosynthesis | cytochrome P450 family, conversion of typhasterol to castasterone, brassinolide biosynthesis | 1.35 | 2.06 | |||
| At5g05690 | 0.587 | CPD, CYP90A1 | Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis | -0.23 | -0.06 | -0.13 | -0.2 | -0.17 | 0.16 | 0 | -0.24 | -0.02 | -0.06 | -0.26 | -0.07 | -0.32 | -0.33 | -0.05 | -0.47 | -0.83 | -0.15 | -0.27 | -0.18 | -0.43 | -1.07 | -2.77 | -0.02 | -0.05 | 0.21 | 0.56 | 0.91 | 0.21 | 0.56 | 0.91 | -0.28 | 0.08 | -0.45 | -0.32 | -0.12 | -0.22 | -0.08 | 0.73 | 1.25 | 0.8 | 1.34 | 0.75 | 1.21 | 0.79 | 1.21 | 0.9 | 1.23 | 0.37 | -0.09 | -0.15 | 0.4 | -0.04 | 0.08 | 0 | -0.14 | -0.34 | -0.16 | -0.06 | 0.32 | 0.01 | 0.35 | -0.95 | 0.62 | -0.09 | 1.47 | -0.49 | -1.12 | -0.28 | -0.13 | -0.49 | 0.08 | -0.06 | -0.06 | 0.17 | 0.13 | -0.1 | -0.21 | -0.54 | -0.02 | -0.06 | -0.12 | -0.09 | -0.01 | 0.09 | -0.01 | -0.17 | -0.13 | -0.08 | 0.15 | 0.45 | 0.01 | 0.05 | -0.05 | 0.19 | -0.13 | -0.04 | -0.18 | -0.04 | -0.13 | 0.05 | -0.19 | -0.05 | -0.49 | -1.46 | At5g05690 | 250752_at | CPD, CYP90A1 | Encodes a member of the CP90A family, a cytochrome P450 monooxygenase which converts 6-deoxocathasterone to 6-deoxoteasterone in the late C6 oxidation pathway and and cathasterone to teasterone in the early C6 oxidation pathway of brassinolide biosynthesis | 10 | brassinosteroid biosynthesis | unidimensional cell growth | brassinosteroid biosynthesis II | brassinosteroid biosynthesis I | Ascorbate and aldarate metabolism | Stilbene, coumarine and lignin biosynthesis | gamma-Hexachlorocyclohexane degradation | Fluorene degradation | Isoprenoid Biosynthesis in the Cytosol and in Mitochondria | brassinosteroid biosynthesis | triterpene, sterol, and brassinosteroid metabolism | cytochrome P450 family, 23alpha-hydroxylase for 6-oxo-cathasterone, brassinolide biosynthesis | 1.92 | 4.24 | ||
| At3g30180 | 0.546 | CYP85A2 | Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide b | -1.02 | -0.22 | -0.71 | -0.36 | 0.46 | -0.15 | -0.49 | -0.27 | -0.32 | -0.45 | -0.2 | -0.17 | -0.2 | 0.47 | -0.54 | -0.69 | -0.53 | 0.17 | 0 | -0.36 | -0.78 | -1.7 | -2.37 | -0.13 | -0.45 | -0.2 | -0.28 | -0.34 | -0.2 | -0.28 | -0.34 | -0.49 | -0.12 | 0.08 | -0.21 | -0.14 | -0.41 | -0.47 | 2.08 | 2.11 | 2.02 | 1.71 | 2.27 | 2.4 | 2.02 | 1.92 | 2.04 | 1.61 | 0.17 | -0.11 | 0.31 | -0.3 | 0.35 | 0.31 | 0.82 | -0.24 | 0.07 | 0.23 | 0.43 | 0.56 | 0.18 | 0.6 | -0.41 | 0.6 | 0.38 | 2.25 | -0.7 | -0.24 | -0.44 | -0.52 | -0.78 | -0.78 | -0.21 | -0.39 | -0.27 | -0.07 | -0.16 | -0.46 | -0.03 | 0.37 | 0.09 | 0.11 | -0.11 | -0.11 | -0.24 | -0.34 | -0.26 | -0.44 | -0.18 | -0.02 | -0.84 | -0.1 | -0.02 | -0.04 | -0.56 | 0.04 | -0.55 | -0.23 | -0.15 | 0.07 | -0.49 | -0.62 | -0.24 | -0.64 | -1.35 | At3g30180 | 256598_at | CYP85A2 | Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide b | 9 | monooxygenase activity | brassinosteroid biosynthesis | triterpene, sterol, and brassinosteroid metabolism | brassinosteroid biosynthesis | cytochrome P450 family, C6-oxidase for 6-deoxycastasterone, other steroids conversion of castasterone to brassinolide | 2.82 | 4.77 | |||||
| At3g13730 | 0.522 | CYP90D1 | Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis, most likely in the conversion step of teasterone (TE) to 3-dehydroteasterone (3DT), and/or 6-deoxoteasterone (6-deoxoTE) to 6-deoxo-3-dehydroteasterone (6-deoxo3DT); or the | member of CYP90D | -0.05 | -0.05 | -0.75 | -0.9 | 0.03 | -0.07 | -0.57 | 0.56 | -0.64 | -0.17 | 0.44 | -0.49 | -0.59 | 0.03 | 0.11 | -0.05 | 0.79 | -0.78 | -0.9 | 0.53 | -0.07 | -0.9 | 0.03 | -0.05 | -0.05 | -0.05 | -0.05 | 0.14 | -0.05 | -0.05 | 0.14 | -0.71 | 0.05 | 0.11 | -0.47 | -0.37 | -0.67 | -0.43 | 0.77 | 0.72 | 0.47 | 0.54 | 0.64 | 0.79 | 0.81 | 0.56 | 0.8 | 0.51 | 0.84 | -0.08 | 0.75 | 0.66 | -0.18 | 0.01 | 0.62 | 0.21 | 0.39 | 0.48 | -0.02 | -0.18 | 0.16 | 0.48 | 0.18 | 0.03 | 0.18 | 0.68 | -0.05 | 0.48 | -0.05 | 1.1 | -0.21 | 0.18 | -0.18 | -0.47 | -0.05 | -0.2 | -0.75 | -0.05 | -1.11 | -0.05 | -0.05 | -0.05 | -0.05 | -0.05 | -0.05 | -0.05 | -0.05 | -0.05 | -0.05 | -0.2 | -0.04 | -0.2 | -0.26 | -0.2 | -0.13 | 0.1 | -0.59 | -0.2 | 0.16 | -0.2 | -0.59 | -0.2 | -0.05 | -0.09 | -0.2 | At3g13730 | 256788_at | CYP90D1 | Encodes a cytochrome P-450 gene that is involved in brassinosteroid biosynthesis, most likely in the conversion step of teasterone (TE) to 3-dehydroteasterone (3DT), and/or 6-deoxoteasterone (6-deoxoTE) to 6-deoxo-3-dehydroteasterone (6-deoxo3DT); or the | member of CYP90D | 7 | brassinosteroid biosynthesis | brassinosteroid biosynthesis | brassinosteroid biosynthesis | triterpene, sterol, and brassinosteroid metabolism | brassinosteroid biosynthesis | cytochrome P450 family, exact substrate in downstream brassinolide synthesis not identified | 1.53 | 2.21 | |||||
| At3g59380 | 0.515 | FTA | farnesyltransferase alpha subunit, putative. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Prenylation facilitates protein adherence to membranes. | 0.04 | -0.02 | 0.03 | -0.06 | 0.01 | 0.05 | -0.13 | -0.2 | -0.18 | -0.12 | -0.03 | -0.09 | -0.13 | -0.1 | -0.09 | -0.28 | -0.03 | -0.01 | -0.2 | -0.07 | -0.18 | -0.26 | -0.17 | -0.22 | -0.21 | 0.02 | 0.13 | 0.22 | 0.02 | 0.13 | 0.22 | -0.21 | -0.18 | -0.23 | -0.01 | 0.06 | 0.02 | -0.4 | 0.22 | 0.28 | 0.18 | 0.31 | 0.07 | 0.28 | 0.06 | 0.11 | 0.06 | 0.15 | 0.18 | 0.18 | 0.03 | 0.05 | 0.32 | 0.19 | 0.05 | 0.24 | 0.35 | 0.28 | 0.1 | 0.01 | -0.07 | 0 | -0.06 | 0.32 | 0.04 | 0.23 | 0.02 | -0.05 | 0.03 | -0.03 | 0.03 | -0.09 | 0.05 | 0 | -0.06 | -0.02 | -0.06 | -0.06 | 0.18 | -0.01 | -0.01 | -0.07 | -0.09 | 0.04 | 0.07 | 0 | -0.14 | -0.04 | 0.02 | 0.19 | -0.16 | -0.11 | -0.17 | -0.08 | -0.1 | -0.07 | 0 | 0.05 | -0.09 | -0.11 | -0.09 | -0.03 | -0.06 | -0.05 | -0.09 | At3g59380 | 251464_at | FTA | farnesyltransferase alpha subunit, putative. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Prenylation facilitates protein adherence to membranes. | 10 | farnesyltranstransferase activity | secondary metabolism | Isoprenoid Biosynthesis in the Cytosol and in Mitochondria | Protein prenylation | protein prenylation | 0.49 | 0.75 | ||||
| page created by Juergen Ehlting | 06/08/06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||