| Co-Expression Analysis of: | CYP90C1, ROT3 (At4g36380) | Institut de Biologie Moléculaire des Plantes |
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| ________________________ | _____________________________________________ | CYPedia Home | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Mutant Data Set | save / view heatmap as: | OpenOffice Table | annotation details for co-expressed genes can be found to the right of the heatmap | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MS Excel Table | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| save / view all data as: | Tab delimited Table | For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) | magnitude of change [log2(mutant / wild type)] | 0 | 0.3 | 0.6 | 0.9 | 1.2 | 1.5 | 1.8 | 2.1 | 2.4 | 2.7 | >3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| greater than zero | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| less than zero | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Locus | r-value | Name | Description | 35S leafy, seedling (143) | aba1, fresh seeds (96) | abi1, fresh seeds (96) | abi3, fresh seeds (96) | acn1, seedlings (63) | acn1, seedlings, with sucrose (63) | add3, seedling (55) | ag12, shoot apex (89) | ag12, flower (89) | akt1, roots (141) | anr1, roots, dex treated, N03 depleted (64) | anr1, roots, not dex treated, N03 depleted (64) | anr1, roots, nitrate depleted (135) | ap1, shoot apex (89) | ap1, flower (89) | ap2, shoot apex (89) | ap2, flower (89) | ap3, shoot apex (89) | ap3, flower (89) | ape2, mature leaf, high light (68) | ape3, mature leaf, low light (68) | ARR22o, seedling (115) | ARR22o, seedling, zeatin (115) | ar4, whole plant (104) | bountifullo, juvenile leaf (48) | camta1, suspension cell (138) | camta1, seedling (138) | cdb1, seedling (137) | cdpk-yfp1, seedling (65) | cdpk-yfp4, seedling (65) | chs, juvenile leaf (67) | cir1-PR1-LUC, whole rosette (31) | cir1-ein2-PR-LUC, whole rosette (31) | cls8, seedling (76) | cls8, seedling, 4°C (76) | clv3, shoot apex (89) | clv3, flower (89) | cngc1, roots (141) | cngc4, roots (141) | co, apical region, vegetative (94) | co, apical region, reproductive, 3d (94) | co, apical region, reproductive, 5d (94) | co, apical region, reproductive, 7d (94) | coi1, senescing leaf (60) | cov, stem, base (66) | cov, stem, tip (66) | det2, seedling, mock, 30min (111) | det2, seedling, BL, 30min (111) | det2, seedling, mock, 1h (111) | det2, seedling, BL, 1h (111) | det2, seedling, mock, 3h (111) | det2, seedling, BL, 3h (111) | det2, seedling (131) | ein2, senescing leaf (60) | ein2-PR1-LUC, whole rosette (31) | etr1, whole plant, water (99) | etr1, whole plant, GA4, 60 min (99) | fls2, seedling, control (81) | fls2, seedling, flg22 (81) | ft, apical region, vegetative (94) | ft, apical region, reproductive, 3d (94) | ft, apical region, reproductive, 5d (94) | ft, apical region, reproductive, 7d (94) | fus, fresh seeds (96) | ga1, seedling, mock, 30min (111) | ga1, seedling, GA3, 30min (111) | ga1, seedling, mock, 1h (111) | ga1, seedling, GA3, 1h (111) | ga1, seedling, mock, 3h (111) | ga1, seedling, GA3, 3h (111) | ga1, seedling (131) | gl1, rosette leaf, stage 10 (88) | gl1, rosette leaf, stage 12 (88) | gpa1, seedling, ABA, 3h (75) | gpa1, seedling (75) | gun1-gun5, whole plant, Norflurazone (98) | hic, guard cell enriched (11) | hic, mature leaf (11) | hic, guard cell enriched, CO2 (11) | hic, mature leaf, CO2 (11) | iae1, hypocotyl (139) | iae2, hypocotyl (139) | icl2 (Col), seedling (28) | icl2 (Ws), seedling (28) | ir1, roots (142) | ku80, whole plant (57) | ku80, whole plant, bleomycin, 3d (57) | leafy-GR, seedling, de (143) | leafy-GR, seedling, de/cyc (143) | leafy-GR, seedling, cyc (143) | lfy, shoot apex (89) | lfy, flower (89) | lfy, apical region, vegetative (94) | lfy, apical region, reproductive, 3d (94) | lfy, apical region, reproductive, 5d (94) | lfy, apical region, reproductive, 7d (94) | ms1-ttg, flower bud, old (9) | ms1-ttg, flower bud, young (9) | myb61, seedling (15) | myb61, seedling, sucrose (15) | MYB61o, seedling (15) | MYB61o, seedling, sucrose (15) | nahG, senescing leaf (60) | o1, seedling (46) | o1, seedling, H202, 3h (46) | pasta2M1, mature leaf (150) | pho1, mature leaf (61) | pho3, leaf (27) | pmr4, mature leaf, Erysiphe cichoracearum (85) | pmr4, mature leaf (85) | RALF1o, seedling (152) | rbohB, seedling (59) | rbohB, seedling, 30°C, 1h (59) | rbohB, seedling, 40°C, 1h (59) | rbohC, root, elongation zone (79) | rdo, fresh seeds (96) | rhd2, lateral roots (29) | sfr2, whole rosette, 4°C (58) | sfr2, whole rosette (58) | sfr2-1, whole rosette, 4°C, 24h (12) | sfr2-1, whole rosette, 4°C, 24h (12) | sfr3, whole rosette, 4°C (58) | sfr3, whole rosette (58) | sfr6, whole rosette, 4°C (58) | sfr6, whole rosette (58) | sfr6, whole rosette, drought (58) | sfr6, seedling (76) | sfr6, seedling, 4°C (76) | sfr6, suspension cell, light (153) | sfr6, suspension cell, dark (153) | sph1, leaves, stage 5 (145) | sph1, leaves, stage 14 (145) | tcp13, flowers (100) | tcp14, flowers (100) | ttg, flower bud, old (9) | ttg, flower bud, young (9) | ufo1, shoot apex (89) | ufo1, flower (89) | gun1-gun5, seedling, far red then white light (83) | gun1-gun5, seedling, dark then white light (83) | zorro, seedlings, control, 2h (103) | zorro, seedlings, control 24h, (103) | zorro, seedlings, zearalenone, 2h (103) | zorro, seedlings, zearalenone, 24h (103) | Locus | Probeset | Name | Description | Annotation score | GO.keywords | FunCat keywords | AraCyc annotations | KEGG annotations | BioPath annotations | AcylLipid category | Literature annotations | Gene family | 90% quantile of DE | max. DE |
| At4g36380 | 1.000 | ROT3, CYP90C1 | Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in th | -0.17 | -0.2 | 0.39 | -0.68 | -0.15 | 0.03 | -0.19 | -0.22 | -0.18 | -0.21 | -0.17 | -0.03 | 0.35 | -0.19 | 0.75 | -0.37 | 0.79 | -0.45 | 1.27 | 0.25 | 0.16 | 1.01 | 0.51 | -0.33 | 1.12 | -0.1 | 0.31 | -0.22 | 0.14 | -0.09 | -0.16 | -0.02 | -0.02 | -0.18 | -0.23 | -0.17 | 0.83 | -0.05 | -0.02 | -0.02 | -0.02 | -0.02 | -0.02 | -0.77 | 0.53 | 0.09 | 0.31 | 0.66 | 0.35 | 0.26 | 1.17 | -0.31 | 0.43 | 0.13 | -0.02 | 0.4 | 0.43 | -0.32 | -0.47 | -0.65 | 0.15 | 0.53 | 0.09 | -1.41 | -0.02 | -0.04 | -0.17 | 0.08 | 0.16 | 0.19 | 0.51 | 0.05 | -0.02 | 0.15 | -0.71 | -0.09 | -0.23 | -0.88 | -0.54 | -0.02 | -0.13 | -0.4 | 1.24 | 0.59 | 0.37 | -0.42 | 0.07 | 0.25 | -1.2 | -1.2 | -0.38 | -0.74 | -0.28 | 0.35 | 0.45 | 0.02 | -0.01 | -0.05 | 0.21 | -0.01 | 0.3 | 0.43 | 0.41 | -0.03 | -0.47 | -0.46 | -0.02 | -0.23 | -0.18 | -0.16 | 0.17 | -0.04 | -0.61 | -0.12 | 0.05 | -0.3 | 0.25 | -0.1 | -0.07 | -0.28 | -0.32 | -0.09 | -0.08 | 0.12 | -0.13 | -2.49 | 0.1 | -0.07 | -0.02 | 0.48 | -0.12 | -0.01 | -0.04 | 0.13 | 0.09 | 0.37 | -0.31 | 1.08 | 0.74 | 0.1 | -0.22 | 0.19 | -0.15 | 0.37 | At4g36380 | 246216_at | ROT3, CYP90C1 | Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in th | 7 | brassinosteroid biosynthesis | leaf morphogenesis | monopolar cell growth | steroid hydroxylase activity | biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine | biosynthesis of phenylpropanoids | Ascorbate and aldarate metabolism | Stilbene, coumarine and lignin biosynthesis | gamma-Hexachlorocyclohexane degradation | Fluorene degradation | triterpene, sterol, and brassinosteroid metabolism | brassinosteroid biosynthesis | cytochrome P450 family, conversion of typhasterol to castasterone, brassinolide biosynthesis | 1.50 | 3.76 | |||
| At1g06520 | 0.534 | Encodes a membrane associated mitochrodrion loclaized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels. | 0.1 | -0.71 | -0.46 | -2.57 | 0.1 | 0.1 | 0.62 | 0.1 | -1.54 | -0.19 | -0.75 | -0.39 | 0.34 | 0.1 | -0.07 | 0.3 | 0.48 | -0.19 | 0.62 | 0.1 | 0.1 | 0.1 | 0.35 | 0.1 | 0.1 | -0.08 | 0.52 | 0.1 | 0.1 | 0.49 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | -0.36 | 0.91 | -0.25 | -0.01 | 0.1 | 0.1 | 0.1 | 0.1 | 0.93 | 0.1 | 0.07 | 0.16 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.81 | 0.1 | 0.32 | -0.16 | -0.3 | 0.1 | -0.01 | 0.85 | 0.44 | 0.31 | -2.33 | 0.16 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | -1.61 | -1.87 | 0.1 | 0.1 | -0.12 | -0.12 | 0.1 | 0.1 | 0.1 | -1.32 | 0.99 | 0.07 | -0.32 | -0.25 | 0.1 | -2.31 | 0.22 | 0.2 | 0.01 | -0.28 | 0.01 | -1.05 | 1.19 | 0.1 | 0.1 | 0.1 | 1.54 | 0.1 | 1.01 | 0.1 | 0.1 | 0.1 | 0.1 | 0.13 | -0.47 | 0.1 | 0.1 | 0.1 | 0.1 | -0.87 | 0.1 | 0.1 | 0.28 | 0.1 | 0.1 | 0.1 | 0.08 | 0.1 | -0.22 | -3.9 | 0.1 | 0.1 | 0.1 | 0.1 | 0.1 | 0.36 | 0.56 | 0.7 | 0.07 | -0.28 | 0.1 | 0.43 | 0.1 | 0.85 | 0.1 | 0.1 | 0.1 | 0.6 | At1g06520 | 262630_at | Encodes a membrane associated mitochrodrion loclaized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels. | 7 | 1-acylglycerol-3-phosphate O-acyltransferase activity | male gamete generation (sensu Magnoliophyta) | metabolism of acyl-lipids in mitochondria | 2.12 | 5.44 | ||||||||
| page created by Juergen Ehlting | 06/08/06 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||