Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP94B3 (At3g48520)	save all data as Tab Delimited Table
_________________________________________
Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
gibberellic acid catabolism	TAIR-GO	27	3
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP94B3 (At3g48520)
max. difference between log2-ratios:				7.4
max. difference between log2-ratios excluding lowest and highest 5%:				3.7
						Link to organ heatmap
there are no co-expressed genes with r>0.5
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP94B3 (At3g48520)
max. difference between log2-ratios:				8.6
max. difference between log2-ratios excluding lowest and highest 5%:				4.9
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
Cell Wall Carbohydrate Metabolism	BioPath	18	0.000	2	0.030
cellulose biosynthesis	BioPath	18	0.000	2	0.000
cellulose biosynthesis	AraCyc	18	0.000	2	0.000
biogenesis of cell wall	FunCat	12	0.000	2	0.001
detoxification	FunCat	10	0.000	1	0.000
detoxification involving cytochrome P450	FunCat	10	0.000	1	0.000
degradation of abscisic acid	LitPath	10	0.000	1	0.000
gibberellic acid catabolism	TAIR-GO	9	0.000	1	0.000
C-compound, carbohydrate anabolism	FunCat	8	0.000	1	0.001
Lipid signaling	AcylLipid	8	0.000	2	0.050
Pathways co-expressed in the Hormone etc. data set (with more than 7 annotation points)						CYP94B3 (At3g48520)
max. difference between log2-ratios:				3.9
max. difference between log2-ratios excluding lowest and highest 5%:				1.6
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
degradation of abscisic acid	LitPath	20	0.000	2	0.000
Phenylpropanoid Metabolism	BioPath	18	0.000	2	0.030
Cell Wall Carbohydrate Metabolism	BioPath	16	0.001	3	0.040
Miscellaneous acyl lipid metabolism	AcylLipid	16	0.000	4	0.017
biogenesis of cell wall	FunCat	14	0.000	2	0.015
core phenylpropanoid metabolism	BioPath	10	0.000	1	0.014
Gluconeogenesis from lipids in seeds	BioPath	10	0.000	1	0.031
cell death	TAIR-GO	10	0.000	1	0.001
fatty acid alpha-oxidation	TAIR-GO	10	0.000	1	0.000
lignin biosynthesis	TAIR-GO	10	0.000	1	0.004
fatty acid oxidation pathway	AraCyc	10	0.000	1	0.017
jasmonic acid biosynthesis	AraCyc	10	0.000	1	0.016
lignin biosynthesis	AraCyc	10	0.000	1	0.081
lipoxygenase pathway	AraCyc	10	0.000	1	0.007
octane oxidation	AraCyc	10	0.000	1	0.005
detoxification	FunCat	10	0.000	1	0.000
detoxification involving cytochrome P450	FunCat	10	0.000	1	0.004
Fatty acid metabolism	KEGG	10	0.000	1	0.005
Galactose metabolism	KEGG	10	0.000	3	0.000
Stilbene, coumarine and lignin biosynthesis	KEGG	10	0.000	1	0.036
Phenylpropanoid pathway	LitPath	10	0.001	1	0.106
gibberellic acid catabolism	TAIR-GO	9	0.000	1	0.001
response to abscisic acid stimulus	TAIR-GO	9	0.000	2	0.000
ascorbic acid biosynthesis	BioPath	8	0.000	1	0.003
Flavonoid and anthocyanin metabolism	BioPath	8	0.000	1	0.021
flavonoid biosynthesis	TAIR-GO	8	0.000	1	0.002
ascorbate glutathione cycle	AraCyc	8	0.000	1	0.012
C-compound, carbohydrate anabolism	FunCat	8	0.000	2	0.000
mRNA synthesis	FunCat	8	0.000	1	0.021
RNA synthesis	FunCat	8	0.000	1	0.021
transcription	FunCat	8	0.000	1	0.006
transcriptional control	FunCat	8	0.000	1	0.004
Ascorbate and aldarate metabolism	KEGG	8	0.000	1	0.003
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP94B3 (At3g48520)
max. difference between log2-ratios:				9.5
max. difference between log2-ratios excluding lowest and highest 5%:				2.7
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
gibberellic acid catabolism	TAIR-GO	9	0.000	1	0.000
Lipid signaling	AcylLipid	8	0.000	2	0.000
page created by Juergen Ehlting	04/03/06