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| Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| jasmonic acid biosynthesis |
TAIR-GO |
180 |
26 |
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| jasmonic acid biosynthesis |
TAIR-GO |
180 |
26 |
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| Lipid signaling |
AcylLipid |
116 |
21 |
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| response to wounding |
TAIR-GO |
96 |
13 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| lipoxygenase pathway |
AraCyc |
60 |
10 |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Hormone etc. data set (with more than 19 annotation points) |
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CYP94C1 (At2g27690) |
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| max. difference between log2-ratios: |
11.1 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.2 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| Phenylpropanoid Metabolism |
BioPath |
86 |
0.000 |
12 |
0.000 |
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| tryptophan biosynthesis |
TAIR-GO |
68 |
0.000 |
9 |
0.000 |
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| Shikimate pathway |
LitPath |
68 |
0.000 |
9 |
0.000 |
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| Aromatic amino acid (Phe, Tyr, Trp) metabolism |
BioPath |
62 |
0.000 |
8 |
0.000 |
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| Biosynthesis of Amino Acids and Derivatives |
BioPath |
62 |
0.000 |
7 |
0.013 |
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| tryptophan biosynthesis |
AraCyc |
60 |
0.000 |
9 |
0.000 |
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| Phenylalanine, tyrosine and tryptophan biosynthesis |
KEGG |
58 |
0.000 |
7 |
0.000 |
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| Trp biosyntesis |
LitPath |
58 |
0.000 |
8 |
0.000 |
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| Glutathione metabolism |
BioPath |
56 |
0.000 |
6 |
0.000 |
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| Glucosinolate Metabolism |
LitPath |
50 |
0.000 |
5 |
0.000 |
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| response to pathogenic bacteria |
TAIR-GO |
48 |
0.000 |
7 |
0.000 |
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| response to wounding |
TAIR-GO |
46 |
0.000 |
6 |
0.000 |
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| jasmonic acid biosynthesis |
TAIR-GO |
42 |
0.000 |
6 |
0.000 |
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| jasmonic acid biosynthesis |
AraCyc |
42 |
0.000 |
6 |
0.000 |
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| Lipid signaling |
AcylLipid |
42 |
0.000 |
6 |
0.007 |
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| sulfate assimilation III |
AraCyc |
36 |
0.000 |
4 |
0.000 |
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| lipoxygenase pathway |
AraCyc |
32 |
0.000 |
5 |
0.000 |
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| Purine metabolism |
KEGG |
32 |
0.000 |
4 |
0.000 |
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| Selenoamino acid metabolism |
KEGG |
30 |
0.000 |
3 |
0.000 |
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| Sulfur metabolism |
KEGG |
30 |
0.000 |
3 |
0.000 |
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| alanine biosynthesis II |
AraCyc |
26 |
0.000 |
3 |
0.001 |
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| dissimilatory sulfate reduction |
AraCyc |
26 |
0.000 |
3 |
0.000 |
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| phenylalanine biosynthesis II |
AraCyc |
26 |
0.000 |
3 |
0.001 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
20 |
0.011 |
2 |
0.119 |
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| indoleacetic acid biosynthesis |
TAIR-GO |
20 |
0.000 |
2 |
0.000 |
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| sulfate assimilation |
TAIR-GO |
20 |
0.000 |
2 |
0.002 |
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| glucosinolate biosynthesis from phenylalanine |
AraCyc |
20 |
0.000 |
2 |
0.000 |
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| glucosinolate biosynthesis from tryptophan |
AraCyc |
20 |
0.000 |
2 |
0.000 |
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| nitrogen and sulfur utilization |
FunCat |
20 |
0.000 |
2 |
0.000 |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
20 |
0.000 |
2 |
0.001 |
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| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) |
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CYP94C1 (At2g27690) |
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| max. difference between log2-ratios: |
10.3 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
1.8 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
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| Phenylpropanoid Metabolism |
BioPath |
74 |
0.000 |
10 |
0.000 |
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| Shikimate pathway |
LitPath |
58 |
0.000 |
8 |
0.000 |
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| tryptophan biosynthesis |
TAIR-GO |
54 |
0.000 |
7 |
0.000 |
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| tryptophan biosynthesis |
AraCyc |
54 |
0.000 |
7 |
0.000 |
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| Trp biosyntesis |
LitPath |
54 |
0.000 |
7 |
0.000 |
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| Aromatic amino acid (Phe, Tyr, Trp) metabolism |
BioPath |
52 |
0.000 |
7 |
0.000 |
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| Lipid signaling |
AcylLipid |
50 |
0.000 |
11 |
0.001 |
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| response to pathogenic bacteria |
TAIR-GO |
44 |
0.000 |
6 |
0.000 |
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| Phenylpropanoid pathway |
LitPath |
40 |
0.000 |
6 |
0.034 |
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| response to wounding |
TAIR-GO |
34 |
0.000 |
5 |
0.000 |
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| Phenylalanine, tyrosine and tryptophan biosynthesis |
KEGG |
32 |
0.000 |
4 |
0.001 |
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| Benzoate degradation via CoA ligation |
KEGG |
29 |
0.000 |
10 |
0.000 |
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| Inositol phosphate metabolism |
KEGG |
29 |
0.000 |
10 |
0.000 |
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| Nicotinate and nicotinamide metabolism |
KEGG |
29 |
0.000 |
10 |
0.000 |
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| lignin biosynthesis |
AraCyc |
28 |
0.000 |
4 |
0.000 |
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| jasmonic acid biosynthesis |
TAIR-GO |
26 |
0.000 |
4 |
0.000 |
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| jasmonic acid biosynthesis |
AraCyc |
26 |
0.000 |
4 |
0.000 |
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| core phenylpropanoid metabolism |
BioPath |
22 |
0.000 |
3 |
0.009 |
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| Chlorophyll biosynthesis and breakdown |
BioPath |
20 |
0.000 |
2 |
0.022 |
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| biosynthesis of proto- and siroheme |
AraCyc |
20 |
0.000 |
2 |
0.016 |
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| biogenesis of chloroplast |
FunCat |
20 |
0.000 |
2 |
0.028 |
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| Porphyrin and chlorophyll metabolism |
KEGG |
20 |
0.000 |
2 |
0.012 |
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| chlorophyll and phytochromobilin metabolism |
LitPath |
20 |
0.020 |
2 |
0.150 |
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| gibberellic acid catabolism |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
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| Glycerolipid metabolism |
KEGG |
18 |
0.000 |
2 |
0.021 |
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| defense response |
TAIR-GO |
17 |
0.000 |
3 |
0.001 |
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| lipoxygenase pathway |
AraCyc |
16 |
0.000 |
3 |
0.000 |
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| intracellular signalling |
FunCat |
16 |
0.000 |
4 |
0.000 |
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| Glycan Biosynthesis and Metabolism |
KEGG |
16 |
0.000 |
5 |
0.001 |
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| Purine metabolism |
KEGG |
16 |
0.000 |
2 |
0.092 |
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| nucleotide metabolism |
TAIR-GO |
15 |
0.000 |
2 |
0.000 |
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| de novo biosynthesis of purine nucleotides I |
AraCyc |
15 |
0.000 |
2 |
0.103 |
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| Leaf Glycerolipid Biosynthesis in cytosol / ER |
BioPath |
14 |
0.000 |
2 |
0.017 |
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| triacylglycerol degradation |
AraCyc |
14 |
0.000 |
3 |
0.005 |
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| secondary metabolism |
FunCat |
14 |
0.000 |
2 |
0.027 |
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| cellulose biosynthesis |
BioPath |
12 |
0.004 |
2 |
0.049 |
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| flavonoid biosynthesis |
AraCyc |
12 |
0.000 |
2 |
0.005 |
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| phospholipid biosynthesis II |
AraCyc |
12 |
0.000 |
2 |
0.003 |
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