Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP94D1 (At1g34540) save all data as Tab Delimited Table










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Pathways co-expressed in the 2 data sets with co-expressed genes (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.







Pathway Source Sum of scores Sum of genes







Cell Wall Carbohydrate Metabolism BioPath 60 15







pectin metabolism BioPath 40 12







Phenylpropanoid Metabolism BioPath 33 5







Glucosyltransferases for benzoic acids BioPath 30 3
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.








Biosynthesis of steroids KEGG 23 5









Stilbene, coumarine and lignin biosynthesis KEGG 22 11









C-compound and carbohydrate utilization FunCat 21 3
For more information on how these pathway maps were generated please read the methods page








Methane metabolism KEGG 20 10









Phenylalanine metabolism KEGG 20 10












Prostaglandin and leukotriene metabolism KEGG 20 10












Terpenoid biosynthesis KEGG 16 4














































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP94D1 (At1g34540)







max. difference between log2-ratios: 4.7











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Cell Wall Carbohydrate Metabolism BioPath 43 0.000 9 0.016










pectin metabolism BioPath 23 0.000 6 0.004


secondary metabolism FunCat 22 0.000 4 0.001

triterpene, sterol, and brassinosteroid metabolism LitPath 22 0.000 5 0.002

Phenylpropanoid Metabolism BioPath 21 0.011 3 0.230

cellulose biosynthesis BioPath 20 0.000 3 0.004

Glucosyltransferases for benzoic acids BioPath 20 0.000 2 0.001

hemicellulose biosynthesis BioPath 16 0.000 2 0.001

Fructose and mannose metabolism KEGG 16 0.000 2 0.021

Glycan Biosynthesis and Metabolism KEGG 16 0.000 2 0.046

Glycerolipid metabolism KEGG 16 0.000 2 0.008

Biosynthesis of steroids KEGG 15 0.000 3 0.003

Biosynthesis of prenyl diphosphates BioPath 14 0.000 2 0.024

Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 14 0.028 2 0.114










pentacyclic triterpenoid biosynthesis TAIR-GO 14 0.000 2 0.000










prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 14 0.000 2 0.003










triterpene biosynthesis LitPath 14 0.000 2 0.001










flavonol biosynthesis AraCyc 12 0.000 3 0.000










nucleotide metabolism FunCat 12 0.000 2 0.000










purine nucleotide metabolism FunCat 12 0.000 2 0.002










C-compound and carbohydrate utilization FunCat 11 0.000 2 0.000










Phosphatidylinositol signaling system KEGG 11 0.000 2 0.009










Signal Transduction KEGG 11 0.000 2 0.010












































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP94D1 (At1g34540)







max. difference between log2-ratios: 3.6











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

















Link to stress heatmap






there are no genes co-expressed with more than 6 annotation points










































































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP94D1 (At1g34540)







max. difference between log2-ratios: 3.5











max. difference between log2-ratios excluding lowest and highest 5%: 2.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Cell Wall Carbohydrate Metabolism BioPath 16.5 0.021 6 0.037





pectin metabolism BioPath 16.5 0.000 6 0.000




Oxidative phosphorylation KEGG 16 0.000 3 0.007




Phenylpropanoid Metabolism BioPath 12 0.014 2 0.236




Stilbene, coumarine and lignin biosynthesis KEGG 12 0.000 6 0.000




Glucosyltransferases for benzoic acids BioPath 10 0.000 1 0.007




C-compound and carbohydrate utilization FunCat 10 0.000 1 0.000




Methane metabolism KEGG 10 0.000 5 0.000




Phenylalanine metabolism KEGG 10 0.000 5 0.000




Prostaglandin and leukotriene metabolism KEGG 10 0.000 5 0.000










signal transduction TAIR-GO 9 0.000 1 0.000










Benzoate degradation via CoA ligation KEGG 9 0.000 1 0.249










Inositol phosphate metabolism KEGG 9 0.001 1 0.282










Nicotinate and nicotinamide metabolism KEGG 9 0.000 1 0.221










biogenesis of cell wall FunCat 8 0.000 2 0.002










C-compound and carbohydrate metabolism FunCat 8 0.013 2 0.090










Basal transcription factors KEGG 8 0.000 2 0.006










Biosynthesis of steroids KEGG 8 0.001 2 0.013










Terpenoid biosynthesis KEGG 8 0.000 2 0.002










Transcription KEGG 8 0.000 2 0.049





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP94D1 (At1g34540)







max. difference between log2-ratios: 5.0











max. difference between log2-ratios excluding lowest and highest 5%: 1.5

















Link to mutants heatmap






there are no genes co-expressed with more than 6 annotation points














































page created by Juergen Ehlting 04/03/06