| Co-Expression Analysis of: | CYP94D2 (At3g56630) | Institut de Biologie Moléculaire des Plantes |
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_____________________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | ____________________________________ | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| ________________________ | _____________________________________________ | CYPedia Home | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Hormones etc. Data Set | save / view heatmap as: | OpenOffice Table | annotation details for co-expressed genes can be found to the right of the heatmap | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MS Excel Table | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| save / view all data as: | Tab delimited Table | For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) | magnitude of change [log2(treatment/control)] | 0 | 0.3 | 0.6 | 0.9 | 1.2 | 1.5 | 1.8 | 2.1 | 2.4 | 2.7 | >2.99 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| greater than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| less than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Locus | r-value | Name | Description | ethylene, 3h, petiole (13) | mock, 30min, seedling (110) | IAA, 30min, seedling (110) | IAA, 1h, seedling (110) | IAA, 3h, seedling (110) | zeatin, 30min, seedling (110) | zeatin, 1h, seedling (110) | zeatin, 3h, seedling (110) | GA3, 30min, seedling (110) | GA3, 1h, seedling (110) | GA3, 3h, seedling (110) | ABA, 30min, seedling (110) | ABA, 1h, seedling (110) | ABA, 3h, seedling (110) | MJ, 30min, seedling (110) | MJ, 1h, seedling (110) | MJ, 3h, seedling (110) | ACC, 30min, seedling (110) | ACC, 1h, seedling (110) | ACC, 3h, seedling (110) | BL, 30min, seedling (110) | BL, 1h, seedling (110) | BL, 3h, seedling (110) | ABA, 3 uM, imbided seed (116) | ABA, 30 uM, imbided seed (116) | GA, 3h, imbibed seed (119) | GA, 6h, imbibed seed (119) | GA, 9h, imbibed seed (119) | GA, 3h, imbibed seed (134) | GA, 6h, imbibed seed (134) | GA, 9h, imbibed seed (134) | GA, 30min, whole plant (99) | GA, 60min, whole plant (99) | GA, 3h, whole plant (99) | IAA, 0.1uM, 1h, seedling (144) | IAA, 0.1uM, 3h, seedling (144) | IAA, 1uM, 1h, seedling (144) | IAA, 1uM, 3h, seedling (144) | ppi, 3h, seedling (113) | ppi, 12h, seedling (113) | uni, 3h, seedling (113) | uni, 12h, seedling (113) | brz220, 3h, seedling (113) | brz220, 12h, seedling (113) | brz91, 3h, seedling (113) | brz91, 12h, seedling (113) | pac, 3h, seedling (113) | pac, 12h, seedling (113) | px, 3h, seedling (113) | px, 12h, seedling (113) | pno8, 3h, seedling (113) | pno8, 12h, seedling (113) | ibup, 3h, seedling (113) | B9, 3h, seedling (113) | AgNO3, 3h, seedling (113) | AVG, 3h, seedling (113) | Sal, 3h, seedling (113) | MG132, 3h, seedling (113) | 246T, 3h, seedling (113) | PCIB, 3h, seedling (113) | TIBA, 3h, seedling (113) | NPA, 3h, seedling (113) | CHX, 3h, seedling (113) | Colm, 3h, seedling (113) | ColPNO8, 3h, seedling (113) | ColBrz, 3h, seedling (113) | glucose, 8h, seedling (14) | sucrose, 8h, seedling (15) | deoxyglucose, 8h_seedling (14) | methylglucose, 8h, seedling (14) | K depleted, whole rosette (97) | K depleted, root (97) | Sulfate depleted, 2h, root (112) | Sulfate depleted, 4h, root (112) | Sulfate depleted, 8h, root (112) | Sulfate depleted, 12h, root (112) | Sulfate depleted, 24h, root (112) | mannitol, 8h, seedling (14) | CO2, 1000ppm, guard cell enriched (11) | CO2, 1000ppm, mature leaf (11) | CO2, high light, whole rosette (95) | CO2, medium light, whole rosette (95) | CO2, low light, whole rosette (95) | CO2, 2h, juvenile leaf (151) | CO2, 4h, juvenile leaf (151) | CO2, 6h, juvenile leaf (151) | CO2, 12h, juvenile leaf (151) | CO2, 24h, juvenile leaf (151) | CO2, 48h, juvenile leaf (151) | dark, 45min, seedling (109) | dark, 4h, seedling (109) | far red, 45min, seedling (109) | far red, 4h, seedling (109) | red pulse1, seedling (109) | red pulse2, seedling (109) | red, 45min, seedling (109) | red, 4h, seedling (109) | blue, 45min, seedling (109) | blue, 4h, seedling (109) | UV-A pulse1, seedling (109) | UV-A pulse2, seedling (109) | UV-AB pulse1, seedling (109) | UV-AB pulse2, seedling (109) | UV-A, 18h, mature leaf (72) | UV-B, 18h, mature leaf (72) | Locus | Probeset | Name | Description | Annotation score | GO.keywords | FunCat keywords | AraCyc annotations | KEGG annotations | BioPath annotations | AcylLipid category | Literature annotations | Gene family | 90% quantile of DE | max. DE |
| At3g56630 | 1.000 | CYP94D2 | cytochrome P450 family protein | 0.01 | 0.13 | -0.67 | -0.19 | 0 | -0.39 | -0.17 | 0.17 | -0.12 | 0.08 | 0.2 | -0.28 | 0.13 | 0.16 | -0.45 | -0.07 | -0.27 | -0.32 | -0.03 | -0.1 | -0.22 | 0.05 | -0.09 | 0.71 | 0.51 | 0.21 | 0.36 | -0.05 | 0.21 | 0.36 | -0.05 | 0.12 | -0.28 | 0.2 | -0.16 | -0.02 | -0.03 | -0.28 | 0.01 | 0.08 | -0.14 | -0.12 | -0.18 | 0.14 | 0.16 | 0.17 | -0.32 | 0.17 | -0.06 | 0.62 | -0.44 | 0.4 | -0.16 | -0.11 | -0.1 | 0.38 | -0.42 | -0.55 | -0.16 | -0.22 | -0.26 | 0.12 | -1.8 | 0.08 | -0.19 | -0.03 | 0.02 | -0.3 | -0.12 | -0.27 | 0.18 | 0.08 | 0.31 | -0.04 | 1.02 | 0 | 0.09 | 0.38 | -0.68 | -0.12 | 0.01 | -0.07 | -0.02 | 0.14 | -0.04 | 0.09 | 0.43 | 0.08 | 0.07 | -0.09 | -0.07 | 0.09 | 0.59 | -0.07 | 0.01 | -0.13 | 0 | -0.02 | 0.28 | 0.12 | 0.36 | 0.06 | 0.13 | 0.24 | 0.84 | At3g56630 | 251699_at | CYP94D2 | cytochrome P450 family protein | 1 | cytochrome P450 family | 0.93 | 2.83 | |||||||
| At1g07250 | 0.590 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | 0.12 | 0.1 | -0.11 | 0.18 | 0.11 | -0.15 | -0.12 | 0.1 | 0.09 | -0.17 | 0.16 | 0.12 | 0.31 | 0.67 | -0.13 | -0.25 | 0.03 | 0.04 | 0.3 | 0.13 | -0.02 | 0.06 | 0.25 | 0.19 | 0.21 | -0.12 | 0.32 | -0.12 | -0.12 | 0.32 | -0.12 | 0.28 | 0.26 | 0 | 0.01 | -0.05 | -0.18 | -0.27 | -0.56 | 0.14 | -0.07 | 0.07 | -0.28 | 0.05 | -0.22 | 0.11 | -0.07 | 0.01 | 0.21 | -0.17 | -0.14 | 0.33 | -0.18 | -0.06 | 0.17 | -0.18 | -0.1 | -0.12 | 0 | -0.01 | -0.16 | -0.01 | -1.75 | -0.12 | 0.39 | 0.03 | -0.3 | -0.4 | -0.1 | -0.02 | -0.17 | 0.23 | -0.03 | -0.13 | 0.18 | 0.33 | 0.12 | 0.36 | -0.8 | -0.51 | 0.25 | 0.51 | 0.13 | -0.16 | -0.27 | 0.23 | 0.26 | 0 | 0.01 | -0.1 | -0.13 | -0.11 | 0.43 | -0.11 | -0.05 | 0 | -0.04 | -0.15 | 0.34 | -0.07 | -0.07 | 0 | 0 | 0.44 | 0.14 | At1g07250 | 256033_at | UDP-glucoronosyl/UDP-glucosyl transferase family protein | 1 | Glycosyl transferase, Family 1 | 0.65 | 2.43 | |||||||||
| At4g29120 | 0.579 | 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein, similar 2-hydroxy-3-oxopropionate reductase (Escherichia coli) | 0.05 | 0.05 | -0.07 | 0.04 | 0.11 | -0.07 | -0.12 | 0.16 | -0.02 | 0.03 | 0.23 | 0.04 | -0.01 | 0.18 | -0.12 | -0.06 | -0.01 | 0.14 | 0.12 | 0.17 | 0.24 | 0.12 | 0.2 | 0.05 | -0.02 | 0.05 | 0.18 | 0.22 | 0.05 | 0.18 | 0.22 | 0 | -0.12 | -0.1 | 0.01 | -0.08 | 0.2 | -0.28 | -0.01 | 0.04 | -0.01 | 0.04 | -0.01 | 0.01 | 0.03 | 0.21 | -0.04 | 0.08 | -0.28 | -0.02 | -0.14 | 0.12 | -0.04 | 0.03 | -0.3 | 0.04 | -0.11 | -0.09 | -0.02 | -0.08 | -0.27 | -0.13 | -1.07 | -0.28 | -0.54 | -0.23 | 0.19 | -0.38 | 0.09 | 0.05 | -0.12 | -0.05 | 0.41 | -0.13 | 0.09 | 0.28 | -0.1 | 0.25 | -0.21 | 0.06 | 0.03 | -0.11 | -0.19 | 0.01 | 0.03 | 0.11 | 0.14 | -0.07 | 0.04 | -0.06 | 0.2 | -0.04 | 0.17 | -0.08 | 0.23 | -0.11 | 0.1 | -0.17 | 0.22 | -0.26 | 0.06 | -0.1 | 0.18 | 0.14 | 0.25 | At4g29120 | 253706_at (m) | 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein, similar 2-hydroxy-3-oxopropionate reductase (Escherichia coli) | 2 | proline biosynthesis I | arginine degradation VIII | oxidative branch of the pentose phosphate pathway | superpathway of gluconate degradation | Valine, leucine and isoleucine degradation | 0.52 | 1.48 | ||||||||
| At4g25700 | 0.556 | BETA-OHASE 1 | beta-carotene hydroxylase, Converts beta-carotene to zeaxanthin via cryptoxanthin. | -0.56 | 0.1 | 0.07 | 0.06 | -0.32 | 0.23 | 0.11 | 0.04 | -0.17 | -0.14 | -0.15 | -0.17 | 0.4 | 0.5 | -0.01 | -0.17 | -0.72 | -0.15 | 0.09 | -0.01 | -0.3 | -0.17 | 0 | 0.17 | 0.15 | 0.6 | -0.43 | -0.15 | 0.6 | -0.43 | -0.15 | 0.03 | -0.13 | 0.09 | -0.54 | -0.56 | -0.68 | -0.69 | -0.17 | 0.07 | -0.08 | 0.12 | 0.06 | 0.04 | 0.36 | 0.13 | -0.2 | -0.19 | -0.35 | 0.04 | 0.02 | -0.04 | 0.22 | 0.17 | -0.36 | 0.56 | -0.49 | 0.22 | 0.23 | 0.16 | -0.63 | 0.07 | -1.94 | -0.37 | -0.17 | -0.49 | -0.38 | -0.31 | 0.6 | 0.38 | 0 | 0.1 | 0.1 | 0.1 | 0.1 | 0.61 | -0.13 | 0.23 | -0.6 | -0.17 | 0.07 | -0.04 | 0.08 | 0.47 | 0.28 | 0.11 | 0.24 | 0.11 | 0.11 | -0.3 | -0.13 | 0.28 | 1.27 | 0.06 | -0.28 | 0.16 | -0.03 | 0.26 | 0.8 | 0.54 | -0.17 | 0.18 | 0.47 | 0.06 | 1.35 | At4g25700 | 254020_at | BETA-OHASE 1 | beta-carotene hydroxylase, Converts beta-carotene to zeaxanthin via cryptoxanthin. | 10 | carotene metabolism | beta-carotene hydroxylase activity | biosynthesis of derivatives of homoisopentenyl pyrophosphate | carotenoid biosynthesis | Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Carotenoid biosynthesis | Carotenoid and abscisic acid metabolism | carotenid biosynthesis | 1.20 | 3.29 | |||
| At1g31910 | 0.543 | GHMP kinase family protein | 0.16 | 0.07 | -0.19 | -0.08 | 0.08 | -0.04 | -0.02 | 0.2 | -0.04 | 0.02 | 0.25 | -0.13 | -0.01 | -0.05 | -0.1 | 0.01 | 0.25 | -0.01 | 0.01 | 0.14 | -0.11 | -0.1 | 0.22 | 0.11 | -0.03 | 0.08 | 0.73 | 0.32 | 0.08 | 0.73 | 0.32 | -0.01 | -0.25 | 0.51 | -0.11 | 0.09 | 0.01 | -0.21 | 0.28 | -0.08 | 0 | 0 | 0.06 | 0.21 | 0.04 | -0.02 | 0.17 | -0.12 | -0.4 | -0.03 | -0.05 | -0.05 | -0.2 | -0.08 | -0.14 | -0.16 | -0.09 | 0.19 | 0.23 | 0.13 | -0.15 | 0.25 | -2.38 | 0.04 | -0.16 | -0.01 | 0.26 | 0.36 | -0.35 | -0.2 | -0.76 | -0.23 | 0.11 | 0.06 | 0.03 | 0.06 | -0.12 | -0.17 | -0.65 | -0.84 | 0.16 | -0.02 | 0.08 | 0.05 | -0.18 | 0.41 | -0.12 | 0.24 | -0.1 | 0.05 | 0.24 | 0.01 | 0 | 0.02 | 0.08 | -0.03 | -0.05 | 0.07 | 0.09 | -0.01 | 0.12 | 0.09 | 0.46 | -0.22 | 0.57 | At1g31910 | 246286_at | GHMP kinase family protein | 2 | mevalonate pathway | Biosynthesis of steroids | Isoprenoid Biosynthesis in the Cytosol and in Mitochondria | Biosynthesis of prenyl diphosphates | IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis | mevalonate pathway, cytosol | 0.73 | 3.10 | ||||||
| At2g07751 | 0.542 | identical to NADH-ubiquinone oxidoreductase chain 3 from Raphanus sativus | 0.25 | 0.08 | -0.18 | -0.81 | 0.05 | 0.05 | -0.02 | 0.27 | -0.15 | 0.1 | 0.17 | -0.18 | -0.37 | 0 | -0.23 | 0.09 | 0.05 | -0.04 | 0.17 | -0.05 | -0.02 | 0.24 | 0.17 | 1.03 | 1.13 | 0.15 | 0.66 | -0.04 | 0.15 | 0.66 | -0.04 | 0.63 | -0.05 | 0.52 | -0.13 | -0.37 | -0.37 | -0.79 | -0.17 | 0.23 | -0.17 | 0.31 | -0.23 | 0.08 | -0.14 | 0.26 | 0.09 | 0.37 | -0.04 | 0.3 | -0.33 | -0.09 | -0.06 | -0.08 | 0.06 | -0.01 | -0.42 | -0.51 | -0.43 | -0.81 | -0.33 | -0.07 | -1.22 | -0.33 | 0.44 | 0.1 | -0.33 | 0.22 | -0.34 | -0.35 | 0.57 | 0.32 | 0.3 | -0.15 | 0.35 | 0.1 | -0.08 | -0.13 | -0.33 | -0.09 | 0.01 | -0.02 | -0.27 | -0.05 | 0.21 | -0.02 | -0.3 | -0.24 | -0.24 | 0.08 | 0.17 | 0.34 | -0.02 | 0.27 | -0.01 | 0.28 | -0.05 | 0.52 | -0.06 | 0.33 | -0.1 | 0.22 | -0.23 | -0.67 | 0.13 | At2g07751 | 244920_s_at (m) | identical to NADH-ubiquinone oxidoreductase chain 3 from Raphanus sativus | 6 | aerobic respiration -- electron donors reaction list | Oxidative phosphorylation | 1.06 | 2.36 | ||||||||
| At5g58290 | 0.536 | RPT3 | 26S proteasome AAA-ATPase subunit (RPT3) | -0.01 | -0.03 | -0.08 | 0.08 | 0.09 | -0.03 | 0.08 | -0.02 | -0.14 | 0 | -0.05 | -0.1 | -0.04 | -0.02 | -0.08 | -0.15 | -0.18 | -0.18 | -0.03 | 0.01 | -0.23 | -0.07 | -0.09 | -0.02 | -0.07 | 0.22 | 0.2 | 0.59 | 0.22 | 0.2 | 0.59 | -0.2 | -0.21 | -0.17 | -0.03 | 0.04 | -0.15 | -0.41 | -0.01 | 0.21 | 0.04 | 0.18 | -0.01 | 0.18 | -0.11 | 0.07 | -0.17 | 0.13 | -0.11 | 0.08 | -0.18 | 0.16 | -0.02 | -0.02 | 0.12 | -0.22 | -0.14 | 0.45 | -0.15 | -0.15 | -0.01 | -0.08 | -2 | -0.24 | -0.37 | -0.28 | 0.26 | 0.01 | 0.34 | 0.35 | 0.35 | -0.03 | -0.11 | 0.05 | 0.11 | 0.05 | 0.17 | 0.46 | 0.06 | -0.11 | 0.28 | 0.19 | 0.04 | -0.01 | -0.09 | -0.01 | -0.05 | 0.08 | -0.09 | -0.05 | 0.15 | -0.06 | 0.01 | -0.11 | -0.05 | -0.14 | -0.04 | -0.09 | 0 | -0.12 | 0.11 | -0.07 | 0.49 | 0 | 0.81 | At5g58290 | 247810_at | RPT3 | 26S proteasome AAA-ATPase subunit (RPT3) | 7 | proteasome regulatory particle, base subcomplex (sensu Eukaryota) | ATPase activity | ubiquitin-dependent protein catabolism | Folding, Sorting and Degradation | Proteasome | 0.66 | 2.81 | ||||||
| At2g21970 | 0.520 | stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein | -0.05 | 0.12 | 0.15 | -0.24 | 0.12 | -0.02 | -0.08 | -0.31 | -0.08 | -0.09 | -0.04 | 0.06 | 0.23 | 0.79 | -0.18 | -0.41 | -0.74 | 0.02 | 0.03 | 0.12 | 0.08 | -0.14 | 0.16 | 0.09 | 0.97 | -0.62 | -0.41 | -0.84 | -0.62 | -0.41 | -0.84 | -0.02 | -0.59 | 0.18 | -0.09 | -0.05 | -0.2 | -0.49 | 0.18 | 0.44 | 0.4 | 0.53 | 0.2 | 0.54 | 0.54 | 0.38 | 0.25 | 0.09 | 0.06 | 0.11 | 0.42 | 0.43 | 0.26 | 0.21 | -0.68 | 0.09 | -0.2 | 0.34 | 0.15 | -0.05 | -0.31 | 0.11 | -2.7 | -0.32 | -0.28 | -0.39 | 0.04 | 0.05 | 0.46 | 0.42 | -0.11 | 0.54 | 0.21 | 0 | 0.3 | 0.19 | 0 | 0.55 | -0.92 | -0.49 | 0.25 | -0.61 | -0.18 | 0.12 | 0.22 | 0.31 | 0.11 | 0.28 | 0.11 | -0.87 | -1.22 | 0.04 | 1.38 | -0.1 | -1.15 | 0 | -0.71 | 0.11 | 0.9 | 0.65 | -0.86 | 0.64 | 0.31 | 0.69 | 1.97 | At2g21970 | 263875_at | stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein | 8 | Photosystems | additional photosystem II components | Early light-inducible proteins | 1.54 | 4.67 | |||||||||
| At5g43010 | 0.510 | RPT4A | 26S proteasome AAA-ATPase subunit (RPT4a) | -0.05 | 0.01 | -0.04 | -0.05 | 0.07 | -0.14 | 0 | 0.12 | -0.03 | 0.08 | -0.08 | 0.01 | 0.14 | -0.01 | -0.16 | -0.23 | 0.04 | -0.23 | -0.1 | 0.08 | -0.22 | -0.12 | 0.14 | 0.02 | 0.01 | 0.09 | 0.46 | 0.36 | 0.09 | 0.46 | 0.36 | 0.04 | -0.2 | -0.14 | -0.02 | -0.03 | 0.02 | -0.39 | 0.04 | 0.1 | 0.11 | 0.03 | 0.08 | 0.18 | -0.11 | -0.02 | -0.08 | 0.05 | -0.32 | 0.13 | 0.02 | 0.03 | 0.05 | -0.03 | -0.02 | -0.08 | -0.12 | 0.38 | 0.01 | -0.1 | 0.01 | 0.28 | -1.25 | -0.03 | -0.23 | 0.03 | 0.2 | 0.57 | -0.05 | -0.04 | -0.26 | -0.03 | 0.12 | -0.25 | 0.15 | 0.27 | 0.2 | 0.16 | -0.28 | -0.52 | 0.5 | 0.04 | -0.06 | -0.14 | -0.1 | 0.09 | 0.15 | 0.1 | 0.03 | -0.2 | -0.21 | -0.07 | -0.1 | -0.17 | -0.05 | -0.05 | 0.06 | -0.19 | 0.01 | -0.3 | 0.07 | -0.28 | 0.27 | -0.13 | 0.98 | At5g43010 | 249180_at | RPT4A | 26S proteasome AAA-ATPase subunit (RPT4a) | 7 | proteasome regulatory particle, base subcomplex (sensu Eukaryota) | ATPase activity | ubiquitin-dependent protein catabolism | Folding, Sorting and Degradation | Proteasome | 0.67 | 2.23 | ||||||
| page created by Vincent Sauveplane | 04/13/06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||