| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP96A11 (At4g39500) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| There are no pathways co-expressed in the 2 data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP96A11 (At4g39500) | |||||||||||||||
| max. difference between log2-ratios: | 5.3 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.5 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| gibberellic acid biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| gibberellin biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.002 |
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| plant / fungal specific systemic sensing and response | FunCat | 10 | 0.000 | 1 | 0.000 | |||||||||||
| plant hormonal regulation | FunCat | 10 | 0.000 | 1 | 0.000 | |||||||||||
| secondary metabolism | FunCat | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Diterpenoid biosynthesis | KEGG | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Gibberellin metabolism | LitPath | 10 | 0.000 | 1 | 0.001 | |||||||||||
| giberelin biosynthesis | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP96A11 (At4g39500) | |||||||||||||||
| max. difference between log2-ratios: | 4.4 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.0 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to stress heatmap | ||||||||||
| ascorbic acid biosynthesis | BioPath | 8 | 0.000 | 1 | 0.000 |
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| Cell Wall Carbohydrate Metabolism | BioPath | 8 | 0.000 | 1 | 0.080 | |||||||||||
| ascorbate glutathione cycle | AraCyc | 8 | 0.000 | 1 | 0.001 | |||||||||||
| Ascorbate and aldarate metabolism | KEGG | 8 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP96A11 (At4g39500) | |||||||||||||||
| max. difference between log2-ratios: | 2.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.9 | |||||||||||||||
| Link to hormones etc. heatmap | ||||||||||||||||
| There are no co-expressed pathways with more than 6 annotation points |
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| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP96A11 (At4g39500) | |||||||||||||||
| max. difference between log2-ratios: | 5.2 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.8 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to mutants heatmap | ||||||||||
| Gluconeogenesis from lipids in seeds | BioPath | 21 | 0.000 | 3 | 0.000 |
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| Intermediary Carbon Metabolism | BioPath | 20 | 0.000 | 3 | 0.006 | |||||||||||
| Fatty acid metabolism | KEGG | 17 | 0.000 | 2 | 0.001 | |||||||||||
| Pyruvate metabolism | KEGG | 17 | 0.000 | 2 | 0.010 | |||||||||||
| Degradation of storage lipids and straight fatty acids | AcylLipid | 17 | 0.000 | 2 | 0.002 | |||||||||||
| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | BioPath | 14 | 0.000 | 2 | 0.007 | |||||||||||
| glyoxylate cycle | AraCyc | 14 | 0.000 | 2 | 0.001 | |||||||||||
| TCA cycle variation VII | AraCyc | 14 | 0.000 | 2 | 0.015 | |||||||||||
| TCA cycle variation VIII | AraCyc | 14 | 0.000 | 2 | 0.006 | |||||||||||
| glycolysis and gluconeogenesis | FunCat | 14 | 0.000 | 2 | 0.011 | |||||||||||
| Glyoxylate and dicarboxylate metabolism | KEGG | 14 | 0.000 | 2 | 0.001 | |||||||||||
| C-compound and carbohydrate metabolism | FunCat | 13 | 0.009 | 2 | 0.090 | |||||||||||
| fermentation | FunCat | 13 | 0.000 | 2 | 0.000 | |||||||||||
| Glycolysis / Gluconeogenesis | KEGG | 13 | 0.000 | 2 | 0.013 | |||||||||||
| Chlorophyll biosynthesis and breakdown | BioPath | 10 | 0.000 | 1 | 0.011 | |||||||||||
| chlorophyll biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| chlorophyll biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.057 | |||||||||||
| glyoxylate cycle | FunCat | 10 | 0.000 | 1 | 0.000 | |||||||||||
| lipid, fatty acid and isoprenoid degradation | FunCat | 10 | 0.000 | 1 | 0.005 | |||||||||||
| Porphyrin and chlorophyll metabolism | KEGG | 10 | 0.000 | 1 | 0.013 | |||||||||||
| chlorophyll and phytochromobilin metabolism | LitPath | 10 | 0.000 | 1 | 0.067 | |||||||||||
| chlorophyll biosynthesis | LitPath | 10 | 0.000 | 1 | 0.005 | |||||||||||
| isoleucine degradation I | AraCyc | 9 | 0.000 | 2 | 0.001 | |||||||||||
| isoleucine degradation III | AraCyc | 9 | 0.000 | 2 | 0.000 | |||||||||||
| leucine degradation I | AraCyc | 9 | 0.000 | 2 | 0.001 | |||||||||||
| leucine degradation II | AraCyc | 9 | 0.000 | 2 | 0.000 | |||||||||||
| valine degradation I | AraCyc | 9 | 0.000 | 2 | 0.002 | |||||||||||
| valine degradation II | AraCyc | 9 | 0.000 | 2 | 0.000 | |||||||||||
| mono-/sesqui-/di-terpene biosynthesis | LitPath | 8 | 0.000 | 2 | 0.006 | |||||||||||
| terpenoid metabolism | LitPath | 8 | 0.000 | 2 | 0.007 | |||||||||||
| fatty acid beta oxidation complex | BioPath | 7 | 0.000 | 1 | 0.005 | |||||||||||
| fatty acid beta-oxidation | TAIR-GO | 7 | 0.000 | 1 | 0.000 | |||||||||||
| fatty acid oxidation pathway | AraCyc | 7 | 0.000 | 1 | 0.009 | |||||||||||
| 1- and 2-Methylnaphthalene degradation | KEGG | 7 | 0.000 | 1 | 0.003 | |||||||||||
| Bile acid biosynthesis | KEGG | 7 | 0.000 | 1 | 0.004 | |||||||||||
| Glycerolipid metabolism | KEGG | 7 | 0.000 | 1 | 0.019 | |||||||||||
| Methane metabolism | KEGG | 7 | 0.000 | 1 | 0.094 | |||||||||||
| Tyrosine metabolism | KEGG | 7 | 0.000 | 1 | 0.027 | |||||||||||
| page created by Alexandre OLRY | 05/02/06 | |||||||||||||||