Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP96A15 (At1g57750) save all data as Tab Delimited Table










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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.



















There are no pathways co-expressed in the 3 data sets




































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page
























































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP96A15 (At1g57750)







max. difference between log2-ratios: 8.8











max. difference between log2-ratios excluding lowest and highest 5%: 6.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 20 0.000 2 0.002










terpenoid metabolism LitPath 20 0.000 2 0.002


Fatty acid elongation and wax and cutin metabolism AcylLipid 10 0.000 4 0.000

sequiterpene biosynthesis LitPath 10 0.000 1 0.000



















































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP96A15 (At1g57750)







max. difference between log2-ratios: 5.3











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

















Link to stress heatmap






There are no co-expressed pathways with r-value greater than 0.5 in this data set



















































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP96A15 (At1g57750)







max. difference between log2-ratios: 6.3











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Cell Wall Carbohydrate Metabolism BioPath 105 0.000 26 0.000










pectin metabolism BioPath 75 0.000 21 0.000










mono-/sesqui-/di-terpene biosynthesis LitPath 54 0.000 6 0.000





terpenoid metabolism LitPath 54 0.000 6 0.000




Miscellaneous acyl lipid metabolism AcylLipid 48 0.000 18 0.000




Starch and sucrose metabolism KEGG 42 0.000 6 0.000




Fatty acid elongation and wax and cutin metabolism AcylLipid 23 0.000 6 0.038




sexual reproduction TAIR-GO 20 0.000 5 0.000




monoterpene biosynthesis LitPath 20 0.000 2 0.000




sucrose metabolism BioPath 16 0.000 2 0.008




biogenesis of cell wall FunCat 16 0.000 7 0.000




Galactose metabolism KEGG 16 0.000 2 0.004




C-compound and carbohydrate utilization FunCat 14 0.000 2 0.000




fatty acid metabolism TAIR-GO 13 0.000 2 0.003




Oxidative phosphorylation KEGG 12 0.000 3 0.006




jasmonic acid biosynthesis TAIR-GO 10 0.000 1 0.020










jasmonic acid mediated signaling pathway TAIR-GO 10 0.000 1 0.000










jasmonic acid metabolism TAIR-GO 10 0.000 1 0.000










monoterpenoid biosynthesis TAIR-GO 10 0.000 1 0.001










N-terminal protein myristoylation TAIR-GO 10 0.000 1 0.007










pentacyclic triterpenoid biosynthesis TAIR-GO 10 0.000 1 0.004










response to wounding TAIR-GO 10 0.000 1 0.026










jasmonic acid biosynthesis AraCyc 10 0.000 1 0.003










monoterpene biosynthesis AraCyc 10 0.000 1 0.000










plant monoterpene biosynthesis AraCyc 10 0.000 1 0.000










C-compound, carbohydrate catabolism FunCat 10 0.000 3 0.004










Biosynthesis of steroids KEGG 10 0.000 1 0.080










sequiterpene biosynthesis LitPath 10 0.000 1 0.001










triterpene biosynthesis LitPath 10 0.000 1 0.032










ascorbic acid biosynthesis BioPath 8 0.000 1 0.076










L-ascorbic acid biosynthesis TAIR-GO 8 0.000 1 0.000










cellulose biosynthesis AraCyc 8 0.000 2 0.001










lactose degradation IV AraCyc 8 0.000 2 0.000










transport FunCat 8 0.000 3 0.000










Pentose and glucuronate interconversions KEGG 8 0.000 2 0.000





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP96A15 (At1g57750)







max. difference between log2-ratios: 8.3











max. difference between log2-ratios excluding lowest and highest 5%: 1.7











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






amino acid metabolism FunCat 14 0.000 2 0.000










aspartate/ornithin cycle / nitric oxid from glutamate BioPath 10 0.000 1 0.000



Biosynthesis of Amino Acids and Derivatives BioPath 10 0.000 1 0.004


de novo biosynthesis of purine nucleotides I AraCyc 10 0.000 1 0.001










de novo biosynthesis of purine nucleotides II AraCyc 10 0.000 1 0.000










UDP-N-acetylglucosamine biosynthesis AraCyc 10 0.000 1 0.000










nitrogen and sulfur utilization FunCat 10 0.000 1 0.000










Alanine and aspartate metabolism KEGG 10 0.000 1 0.000










Cyanoamino acid metabolism KEGG 10 0.000 1 0.000










Nitrogen metabolism KEGG 10 0.000 1 0.000



























page created by Alexandre OLRY 05/02/06