Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP96A2 (At4g32170)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
Miscellaneous acyl lipid metabolism	AcylLipid	126	51
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP96A2 (At4g32170)
max. difference between log2-ratios:				8.4
max. difference between log2-ratios excluding lowest and highest 5%:				5.5
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Miscellaneous acyl lipid metabolism	AcylLipid	38	0.000	14	0.000
Fatty acid elongation and wax and cutin metabolism	AcylLipid	24	0.000	6	0.008
fatty acid metabolism	TAIR-GO	17	0.000	3	0.000
sexual reproduction	TAIR-GO	16	0.000	4	0.000
lignin biosynthesis	AraCyc	11	0.000	5	0.000
Phenylpropanoid pathway	LitPath	11	0.000	5	0.000
Phenylpropanoid Metabolism	BioPath	8	0.000	4	0.004
cuticle biosynthesis	TAIR-GO	8	0.000	2	0.000
long-chain fatty acid metabolism	TAIR-GO	8	0.000	2	0.000
very-long-chain fatty acid metabolism	TAIR-GO	8	0.000	2	0.000
suberin biosynthesis	AraCyc	7	0.000	3	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP96A2 (At4g32170)
max. difference between log2-ratios:				6.4
max. difference between log2-ratios excluding lowest and highest 5%:				1.4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
Miscellaneous acyl lipid metabolism	AcylLipid	8	0.000	4	0.001
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP96A2 (At4g32170)
max. difference between log2-ratios:				3.9
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Cell Wall Carbohydrate Metabolism	BioPath	97	0.000	25	0.000
pectin metabolism	BioPath	75	0.000	21	0.000
mono-/sesqui-/di-terpene biosynthesis	LitPath	54	0.000	6	0.000
terpenoid metabolism	LitPath	54	0.000	6	0.000
Miscellaneous acyl lipid metabolism	AcylLipid	48	0.000	18	0.000
Starch and sucrose metabolism	KEGG	42	0.000	6	0.000
Phenylpropanoid Metabolism	BioPath	24	0.010	4	0.322
Phenylpropanoid pathway	LitPath	24	0.016	4	0.117
Fatty acid elongation and wax and cutin metabolism	AcylLipid	23	0.000	7	0.012
core phenylpropanoid metabolism	BioPath	22	0.000	3	0.016
sexual reproduction	TAIR-GO	20	0.000	5	0.000
monoterpene biosynthesis	LitPath	20	0.000	2	0.000
sucrose metabolism	BioPath	16	0.000	2	0.008
biogenesis of cell wall	FunCat	16	0.000	7	0.000
Galactose metabolism	KEGG	16	0.000	2	0.004
C-compound and carbohydrate utilization	FunCat	14	0.000	2	0.000
fatty acid metabolism	TAIR-GO	13	0.000	2	0.002
Oxidative phosphorylation	KEGG	12	0.000	3	0.006
jasmonic acid biosynthesis	TAIR-GO	10	0.000	1	0.018
jasmonic acid mediated signaling pathway	TAIR-GO	10	0.000	1	0.000
jasmonic acid metabolism	TAIR-GO	10	0.000	1	0.000
monoterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.001
N-terminal protein myristoylation	TAIR-GO	10	0.000	1	0.006
pentacyclic triterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.003
response to wounding	TAIR-GO	10	0.000	1	0.024
jasmonic acid biosynthesis	AraCyc	10	0.000	1	0.004
monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
plant monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
C-compound, carbohydrate catabolism	FunCat	10	0.000	3	0.005
Biosynthesis of steroids	KEGG	10	0.000	1	0.080
sequiterpene biosynthesis	LitPath	10	0.000	1	0.001
triterpene biosynthesis	LitPath	10	0.000	1	0.042
cellulose biosynthesis	AraCyc	8	0.000	2	0.002
lactose degradation IV	AraCyc	8	0.000	2	0.000
transport	FunCat	8	0.000	3	0.000
Pentose and glucuronate interconversions	KEGG	8	0.000	2	0.000
Pathways co-expressed in the Mutant data set (with more than 8 annotation points)						CYP96A2 (At4g32170)
max. difference between log2-ratios:				10.8
max. difference between log2-ratios excluding lowest and highest 5%:				1.2
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Phenylpropanoid Metabolism	BioPath	43	0.000	10	0.000
Cell Wall Carbohydrate Metabolism	BioPath	34	0.000	8	0.083
Phenylpropanoid pathway	LitPath	33	0.000	8	0.000
Miscellaneous acyl lipid metabolism	AcylLipid	32	0.000	15	0.000
core phenylpropanoid metabolism	BioPath	26	0.000	5	0.000
Ribosome	KEGG	24	0.000	4	0.059
C-compound and carbohydrate metabolism	FunCat	22	0.010	6	0.105
pectin metabolism	BioPath	20	0.000	6	0.009
Glycan Biosynthesis and Metabolism	KEGG	18	0.000	2	0.016
Fatty acid elongation and wax and cutin metabolism	AcylLipid	17	0.000	7	0.003
protein synthesis	FunCat	12	0.018	2	0.302
lignin biosynthesis	AraCyc	11	0.000	5	0.000
Glutamate/glutamine from nitrogen fixation	BioPath	10	0.000	1	0.018
salycilic acid biosynthesis	BioPath	10	0.000	1	0.002
ammonia assimilation cycle	AraCyc	10	0.000	1	0.005
glutamine biosynthesis I	AraCyc	10	0.000	1	0.003
nitrate assimilation pathway	AraCyc	10	0.000	1	0.006
assimilation of ammonia, metabolism of the glutamate group	FunCat	10	0.000	1	0.041
biogenesis of cell wall	FunCat	10	0.000	3	0.016
nitrogen and sulfur metabolism	FunCat	10	0.000	1	0.037
Glutamate metabolism	KEGG	10	0.000	1	0.051
Nitrogen metabolism	KEGG	10	0.000	1	0.029
Peptidoglycan biosynthesis	KEGG	10	0.000	1	0.001
Starch and sucrose metabolism	KEGG	10	0.001	2	0.025
page created by Juergen Ehlting	06/08/06