| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP96A3 (At1g65340) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| There are no patways co-expressed in the 2 data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP96A3 (At1g65340) | |||||||||||||||
| max. difference between log2-ratios: | 4.5 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.0 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| gibberellic acid biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 |
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| seed germination | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Diterpenoid biosynthesis | KEGG | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Gibberellin metabolism | LitPath | 10 | 0.000 | 1 | 0.001 | |||||||||||
| giberelin biosynthesis | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP96A3 (At1g65340) | |||||||||||||||
| max. difference between log2-ratios: | 2.2 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.0 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| There are no co-expressed pathways with more than 6 annotation points |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP96A3 (At1g65340) | |||||||||||||||
| max. difference between log2-ratios: | 2.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.0 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| Pyruvate metabolism | KEGG | 18 | 0.000 | 3 | 0.001 |
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| Biosynthesis of Amino Acids and Derivatives | BioPath | 10 | 0.000 | 1 | 0.049 | |||||||||||
| Branched-chain amino acids from aspartate | BioPath | 10 | 0.000 | 1 | 0.001 | |||||||||||
| leucine biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| leucine biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.004 | |||||||||||
| amino acid metabolism | FunCat | 10 | 0.000 | 1 | 0.010 | |||||||||||
| Valine, leucine and isoleucine biosynthesis | KEGG | 10 | 0.000 | 1 | 0.012 | |||||||||||
| Glucosinolate Metabolism | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| phenylalanine degradation I | AraCyc | 8 | 0.000 | 2 | 0.001 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP96A3 (At1g65340) | |||||||||||||||
| max. difference between log2-ratios: | 3.2 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.0 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| There are no co-expressed pathways with r-value greater than 0.5 in this data set |
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| page created by Alexandre OLRY | 04/28/06 | |||||||||||||||