Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP96A6P (At5g51900) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are co-expressed pathways in the hormone data set only



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP96A6P (At5g51900)







max. difference between log2-ratios: 2.1











max. difference between log2-ratios excluding lowest and highest 5%: 0.4

















Link to organ heatmap






there are no co-expressed genes with more than 6 annotation points












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP96A6P (At5g51900)







max. difference between log2-ratios: 2.7











max. difference between log2-ratios excluding lowest and highest 5%: 0.6

















Link to stress heatmap






there are no co-expressed genes with r>0.5



















































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP96A6P (At5g51900)







max. difference between log2-ratios: 2.1











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






degradation of abscisic acid LitPath 10 0.000 1 0.003





flavonoid biosynthesis TAIR-GO 8 0.002 1 0.000




transcription FunCat 8 0.002 1 0.000




RNA synthesis FunCat 8 0.001 1 0.000










mRNA synthesis FunCat 8 0.000 1 0.000










transcriptional control FunCat 8 0.015 1 0.010










L-ascorbate peroxidase activity TAIR-GO 8 0.002 1 0.000










Phenylpropanoid Metabolism BioPath 8 0.000 1 0.000










Flavonoid and anthocyanin metabolism BioPath 8 0.000 1 0.000










ascorbate glutathione cycle AraCyc 8 0.000 1 0.001










Ascorbate and aldarate metabolism KEGG 8 0.002 1 0.000










Cell Wall Carbohydrate Metabolism BioPath 8 0.013 1 0.009










ascorbic acid biosynthesis BioPath 8 0.003 1 0.005





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP96A6P (At5g51900)







max. difference between log2-ratios: 3.9











max. difference between log2-ratios excluding lowest and highest 5%: 0.3

















Link to mutants heatmap






there are no co-expressed genes with more than 6 annotation points





































page created by Juergen Ehlting 06/08/06