| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP96A6P (At5g51900) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are co-expressed pathways in the hormone data set only | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP96A6P (At5g51900) | |||||||||||||||
| max. difference between log2-ratios: | 2.1 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.4 | |||||||||||||||
| Link to organ heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP96A6P (At5g51900) | |||||||||||||||
| max. difference between log2-ratios: | 2.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.6 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP96A6P (At5g51900) | |||||||||||||||
| max. difference between log2-ratios: | 2.1 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.0 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| degradation of abscisic acid | LitPath | 10 | 0.000 | 1 | 0.003 |
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| flavonoid biosynthesis | TAIR-GO | 8 | 0.002 | 1 | 0.000 | |||||||||||
| transcription | FunCat | 8 | 0.002 | 1 | 0.000 | |||||||||||
| RNA synthesis | FunCat | 8 | 0.001 | 1 | 0.000 | |||||||||||
| mRNA synthesis | FunCat | 8 | 0.000 | 1 | 0.000 | |||||||||||
| transcriptional control | FunCat | 8 | 0.015 | 1 | 0.010 | |||||||||||
| L-ascorbate peroxidase activity | TAIR-GO | 8 | 0.002 | 1 | 0.000 | |||||||||||
| Phenylpropanoid Metabolism | BioPath | 8 | 0.000 | 1 | 0.000 | |||||||||||
| Flavonoid and anthocyanin metabolism | BioPath | 8 | 0.000 | 1 | 0.000 | |||||||||||
| ascorbate glutathione cycle | AraCyc | 8 | 0.000 | 1 | 0.001 | |||||||||||
| Ascorbate and aldarate metabolism | KEGG | 8 | 0.002 | 1 | 0.000 | |||||||||||
| Cell Wall Carbohydrate Metabolism | BioPath | 8 | 0.013 | 1 | 0.009 | |||||||||||
| ascorbic acid biosynthesis | BioPath | 8 | 0.003 | 1 | 0.005 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP96A6P (At5g51900) | |||||||||||||||
| max. difference between log2-ratios: | 3.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.3 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| page created by Juergen Ehlting | 06/08/06 | |||||||||||||||