Co-Expression Analysis of: CYP97A3 (At1g31800) Institut de Biologie Moléculaire des Plantes



































































































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Hormones etc. Data Set save / view heatmap as: OpenOffice Table annotation details for co-expressed genes can be found to the right of the heatmap


















































































































MS Excel Table


















































































































save / view all data as: Tab delimited Table For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets.















































































































shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) magnitude of change [log2(treatment/control)]    0   0.3   0.6   0.9  1.2   1.5   1.8   2.1   2.4   2.7   >2.99 












































































































greater than zero                                                         












































































































less than zero                                                         












































































































Locus r-value Name Description ethylene, 3h, petiole (13) mock, 30min, seedling (110) IAA, 30min, seedling (110) IAA, 1h, seedling (110) IAA, 3h, seedling (110) zeatin, 30min, seedling (110) zeatin, 1h, seedling (110) zeatin, 3h, seedling (110) GA3, 30min, seedling (110) GA3, 1h, seedling (110) GA3, 3h, seedling (110) ABA, 30min, seedling (110) ABA, 1h, seedling (110) ABA, 3h, seedling (110) MJ, 30min, seedling (110) MJ, 1h, seedling (110) MJ, 3h, seedling (110) ACC, 30min, seedling (110) ACC, 1h, seedling (110) ACC, 3h, seedling (110) BL, 30min, seedling (110) BL, 1h, seedling (110) BL, 3h, seedling (110) ABA, 3 uM, imbided seed (116) ABA, 30 uM, imbided seed (116) GA, 3h, imbibed seed (119) GA, 6h, imbibed seed (119) GA, 9h, imbibed seed (119) GA, 3h, imbibed seed (134) GA, 6h, imbibed seed (134) GA, 9h, imbibed seed (134) GA, 30min, whole plant (99) GA, 60min, whole plant (99) GA, 3h, whole plant (99) IAA, 0.1uM, 1h, seedling (144) IAA, 0.1uM, 3h, seedling (144) IAA, 1uM, 1h, seedling (144) IAA, 1uM, 3h, seedling (144) ppi, 3h, seedling (113) ppi, 12h, seedling (113) uni, 3h, seedling (113) uni, 12h, seedling (113) brz220, 3h, seedling (113) brz220, 12h, seedling (113) brz91, 3h, seedling (113) brz91, 12h, seedling (113) pac, 3h, seedling (113) pac, 12h, seedling (113) px, 3h, seedling (113) px, 12h, seedling (113) pno8, 3h, seedling (113) pno8, 12h, seedling (113) ibup, 3h, seedling (113) B9, 3h, seedling (113) AgNO3, 3h, seedling (113) AVG, 3h, seedling (113) Sal, 3h, seedling (113) MG132, 3h, seedling (113) 246T, 3h, seedling (113) PCIB, 3h, seedling (113) TIBA, 3h, seedling (113) NPA, 3h, seedling (113) CHX, 3h, seedling (113) Colm, 3h, seedling (113) ColPNO8, 3h, seedling (113) ColBrz, 3h, seedling (113) glucose, 8h, seedling (14) sucrose, 8h, seedling (15) deoxyglucose, 8h_seedling (14) methylglucose, 8h, seedling (14) K depleted, whole rosette (97) K depleted, root (97) Sulfate depleted, 2h, root (112) Sulfate depleted, 4h, root (112) Sulfate depleted, 8h, root (112) Sulfate depleted, 12h, root (112) Sulfate depleted, 24h, root (112) mannitol, 8h, seedling (14) CO2, 1000ppm, guard cell enriched (11) CO2, 1000ppm, mature leaf (11) CO2, high light, whole rosette (95) CO2, medium light, whole rosette (95) CO2, low light, whole rosette (95) CO2, 2h, juvenile leaf (151) CO2, 4h, juvenile leaf (151) CO2, 6h, juvenile leaf (151) CO2, 12h, juvenile leaf (151) CO2, 24h, juvenile leaf (151) CO2, 48h, juvenile leaf (151) dark, 45min, seedling (109) dark, 4h, seedling (109) far red, 45min, seedling (109) far red, 4h, seedling (109) red pulse1, seedling (109) red pulse2, seedling (109) red, 45min, seedling (109) red, 4h, seedling (109) blue, 45min, seedling (109) blue, 4h, seedling (109) UV-A pulse1, seedling (109) UV-A pulse2, seedling (109) UV-AB pulse1, seedling (109) UV-AB pulse2, seedling (109) UV-A, 18h, mature leaf (72) UV-B, 18h, mature leaf (72) Locus Probeset Name Description Annotation score GO.keywords FunCat keywords AraCyc annotations KEGG annotations BioPath annotations AcylLipid category Literature annotations Gene family 90% quantile of DE max. DE
At1g31800 1.000 CYP97A3 cytochrome P450 family protein -0.17 0.03 -0.02 0.05 -0.16 -0.15 0.08 -0.01 -0.06 -0.2 -0.19 -0.11 -0.2 -0.02 -0.17 -0.21 -0.13 -0.21 -0.16 -0.05 -0.18 -0.36 0.1 0.02 -0.17 0.18 0.29 -0.16 0.18 0.29 -0.16 -0.14 -0.04 0.11 -0.21 -0.08 -0.02 -0.47 0.36 -0.21 0.24 -0.15 0.33 0 0.38 -0.29 0.21 -0.22 0.18 0.07 0.58 -0.03 0.15 0.09 -0.11 0.03 0.07 0.37 0.32 0.19 0.16 0.31 -0.32 -0.02 -0.01 -0.09 0.24 0.01 0.17 0.27 -1.1 0.17 0.09 -0.23 -0.38 -0.22 0.21 0.09 0.76 -0.04 -0.1 0.03 0.19 0.17 0.1 -0.03 0.17 0.04 0.06 -0.26 -0.82 -0.04 0.45 0.14 -0.43 0.22 -0.12 0.1 0.14 0.23 -0.19 -0.17 -0.08 -0.1 0.53 At1g31800 246268_at CYP97A3 cytochrome P450 family protein 1






cytochrome P450 family 0.71 1.86
At1g17220 0.668
Similar to Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) from Phaseolus vulgaris -0.23 0.11 0.02 0.1 -0.16 0.03 -0.02 0.02 0 -0.12 -0.2 -0.15 -0.17 -0.23 -0.17 -0.32 -0.12 -0.3 -0.3 -0.07 -0.41 -0.41 -0.01 0.23 0.04 -0.19 0.01 0.11 -0.19 0.01 0.11 0.02 0.03 -0.09 0.06 0.02 0.06 -0.5 0.3 0.18 0.14 0.21 0.23 0.32 0.34 0.22 0.03 0.19 0.22 0.15 0.21 0.27 0.26 0.06 -0.18 0.11 0.06 0.27 0.22 0.18 0.28 0.28 -0.46 -0.21 -0.38 -0.12 0.19 -0.08 0.27 0.31 -1.62 -0.23 0.06 0.11 0.16 0.37 0.03 0.28 -0.17 -0.43 0.23 0.15 0.24 0.19 0.05 0.11 0.16 0.11 0.13 -0.02 -1.67 0.36 0.41 0.46 -0.42 0.12 -0.25 -0.03 0.15 0.13 -0.43 0.21 -0.26 -0.03 0.63 At1g17220 262483_at
Similar to Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) from Phaseolus vulgaris 4


Translation factors Translation (chloroplast)


0.76 2.31
At1g31190 0.653
inositol monophosphatase family protein, similar to Myo-inositol-1(or 4)-monophosphatase (Homo sapiens) 0.01 0.06 0.07 -0.14 0.02 -0.06 -0.05 0.07 0.04 -0.19 -0.09 -0.33 -0.33 -0.04 -0.24 -0.14 -0.06 -0.39 -0.21 -0.04 -0.34 -0.37 -0.09 0.14 -0.13 0.1 0.4 0.07 0.1 0.4 0.07 -0.15 -0.31 -0.28 -0.04 -0.03 0.04 -0.38 0.5 -0.1 0.36 -0.3 0.12 -0.01 0.35 -0.07 0.01 0.02 0.31 -0.14 0.24 -0.08 0.33 -0.15 -0.18 0.04 0.2 0.31 0.23 0.2 0.38 0.12 -0.24 -0.14 -0.32 -0.2 0.1 0.76 -0.14 -0.03 -0.79 0.06 -0.04 -0.04 0.06 0.05 -0.22 0.1 0.13 -0.07 0.11 0.17 0.21 0.18 0.06 0.03 0.26 0.01 0.16 0.06 -0.39 0.06 0.02 0.06 -0.39 0.06 -0.39 0.06 0.01 0.06 -0.39 0.06 -0.08 0.44 0.69 At1g31190 263705_at
inositol monophosphatase family protein, similar to Myo-inositol-1(or 4)-monophosphatase (Homo sapiens) 2



Cell Wall Carbohydrate Metabolism | Phytic acid biosynthesis


0.78 1.55
At1g66670 0.648 CLPP3 One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). 0.16 -0.03 -0.19 -0.16 -0.3 -0.06 -0.2 -0.25 -0.07 -0.02 -0.11 -0.14 -0.22 -0.28 -0.24 -0.23 -0.22 -0.26 -0.25 -0.21 -0.18 -0.36 -0.19 -0.09 -0.15 0.09 0.12 0.07 0.09 0.12 0.07 -0.15 -0.09 -0.1 -0.1 -0.15 0.02 -0.36 0.18 -0.31 0.23 -0.19 0.19 -0.04 0.2 -0.02 0.17 -0.13 -0.21 -0.05 0.37 -0.09 0.25 0.02 0.14 0.06 0.08 0.27 0.21 0.02 0.28 0.22 -0.97 0.22 -0.04 0.01 0.31 0.39 0.37 0.39 -0.38 0.05 -0.03 0.05 -0.21 0.24 0.11 0.37 0.56 -0.28 0.13 0.11 0.18 0.1 0.02 -0.04 0.06 0.03 -0.06 -0.21 -0.41 0.18 0.19 0.01 -0.24 0.04 -0.21 -0.17 0.07 -0.09 -0.05 0.06 0.19 0.41 1.26 At1g66670 256411_at CLPP3 One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). 4 chloroplastic endopeptidase Clp complex | ATP-dependent proteolysis


Chloroplastic protein turnover | ClpP protease complex


0.68 2.24
At5g49030 0.646
tRNA synthetase class I (I, L, M and V) family protein -0.15 0.07 -0.04 0.11 -0.17 0.02 0.08 0 -0.03 0 -0.02 0.02 -0.12 -0.24 0.06 -0.15 -0.22 -0.22 0.01 -0.03 -0.07 -0.33 0.01 0.04 0.02 0.17 0.15 0.37 0.17 0.15 0.37 0 0.03 0.21 0 -0.12 0.19 -0.46 0.18 -0.1 0.11 -0.22 0.12 0.12 0.26 0.01 0.05 0.05 -0.1 0.28 0 0.01 0.09 -0.05 0.13 0.12 0.01 0.17 0.22 0.23 0.24 0.37 -0.4 -0.2 -0.52 -0.31 0.17 0.05 0.13 0.15 -1.28 -0.23 0.08 -0.1 0.44 0.12 0.02 -0.12 0.47 -0.42 -0.09 -0.13 -0.16 0.17 0.13 0.05 0.2 0.35 0.01 0.09 -0.75 0.03 0.26 0.13 -0.23 -0.05 -0.25 0.07 0.1 0.07 0.11 0.07 -0.38 -0.31 0.26 At5g49030 248634_at
tRNA synthetase class I (I, L, M and V) family protein 2

tRNA charging pathway Valine, leucine and isoleucine biosynthesis | Aminoacyl-tRNA biosynthesis



0.73 1.74
At2g30390 0.642
ferrochelatase II, Protoheme ferro-lyase -0.3 0.08 -0.13 -0.23 0.11 -0.27 -0.01 0.13 -0.1 -0.19 -0.06 -0.41 -0.11 -0.03 -0.03 -0.12 -0.14 -0.25 0.05 0.25 0.08 -0.34 -0.24 0.32 0.15 -0.16 0.28 0.11 -0.16 0.28 0.11 -0.53 -0.34 0.02 0.08 -0.04 0.05 0.06 0.31 0.11 0.02 -0.28 0.17 0.18 0.56 0.17 0.1 -0.1 0.08 -0.05 0.32 0.34 0.27 0.36 -0.46 0.16 -0.33 0.54 0.21 0.4 0.32 0.38 -0.31 -0.64 -0.52 -0.42 0.01 -0.02 0.25 0.52 -1.3 0.08 0.04 0.08 -0.03 0.02 0.09 0.43 -0.18 -0.1 -0.13 0.45 0.22 0.12 -0.03 0.12 0.19 0.11 0.1 -0.15 -0.98 -0.06 0.39 0.32 -0.6 0.02 -0.18 0.19 0.17 0.32 -0.49 0.25 -0.33 -0.14 0.37 At2g30390 267471_at
ferrochelatase II, Protoheme ferro-lyase 10

biosynthesis of proto- and siroheme Porphyrin and chlorophyll metabolism Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Chlorophyll biosynthesis and breakdown
chlorophyll and phytochromobilin metabolism | phytochromobilin biosynthesis
0.92 1.86
At3g62910 0.622 APG3 Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development, similar to peptide chain release factor 1 (Escherichia coli) -0.22 0.03 -0.23 -0.09 -0.03 -0.16 -0.22 0.43 -0.07 -0.14 -0.05 -0.15 -0.05 -0.36 0.05 -0.19 -0.05 -0.18 -0.08 0.12 -0.06 -0.41 0.22 0.05 -0.37 -0.04 0.16 0.05 -0.04 0.16 0.05 0.03 0.16 0.4 0.09 -0.31 0.49 -0.24 0.26 -0.65 0.13 -0.57 0.35 -0.01 0.38 -0.32 0.03 -0.22 -0.08 -0.27 0.28 -0.27 0.39 -0.03 -0.1 -0.01 -0.09 0.48 0.47 0.22 0.05 0.42 0.23 -0.08 -0.03 -0.16 0.12 0.54 -0.1 -0.03 -2.31 0.03 0.03 0.03 0.03 0.03 0.03 -0.11 1.1 -1.06 0.43 0.05 0.32 -0.1 -0.01 -0.06 0.01 0.11 -0.05 0.03 0.03 0.03 0.03 0.03 0.03 0.03 0.03 0.03 0.03 0.03 0.03 0.03 0.03 0.03 0.98 At3g62910 251193_at APG3 Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development, similar to peptide chain release factor 1 (Escherichia coli) 2 chloroplast organization and biogenesis protein synthesis | translation
Translation factors



0.83 3.42
At4g28660 0.619
photosystem II reaction centre W (PsbW) family protein -0.22 0.04 0.04 0.04 -0.19 -0.11 0.1 0.04 -0.08 0.02 -0.25 -0.16 -0.13 -0.61 -0.14 -0.16 -0.21 -0.16 -0.1 -0.08 -0.23 -0.33 -0.03 0.02 -0.19 -0.16 0.06 0.16 -0.16 0.06 0.16 -0.03 -0.41 -0.32 -0.01 -0.09 0.14 -0.66 0.28 -0.03 0.28 -0.15 0.24 0.14 0.32 0.02 0.13 0.03 -0.14 0.11 0.28 -0.13 0.34 0.22 -0.33 0.22 -0.06 0.4 0.15 0.31 0.15 0.07 -0.57 -0.35 -0.51 -0.48 0.41 -0.4 0.3 0.3 -0.19 0.18 0.15 0.05 -0.07 0.18 0.05 0.06 0.53 0.68 0.03 -0.22 0.17 0.18 0.13 0.09 0.11 0.08 0.01 -0.23 -2.27 0.28 0.78 0.27 -0.61 -0.01 -0.01 0.35 0.4 0.49 -0.8 0.86 -0.37 0.21 1.25 At4g28660 253790_at
photosystem II reaction centre W (PsbW) family protein 2
photosynthesis
Photosynthesis



1.04 3.51
At1g55490 0.617 CPN60B encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. -0.13 0 -0.1 0.07 -0.04 -0.11 0.01 0.19 -0.04 0.01 -0.03 -0.16 -0.01 -0.46 -0.12 -0.14 0.02 -0.18 -0.17 0.01 -0.21 -0.3 0.09 -0.08 -0.27 0.03 0.12 0.08 0.03 0.12 0.08 0.07 -0.1 0.08 0.05 -0.1 0.25 -0.32 0.31 -0.09 0.12 -0.26 0.39 0.07 0.11 -0.08 0.19 -0.13 -0.37 0.1 0.16 -0.33 0.18 0.06 0.02 0.22 0.04 0.41 0.22 0.5 0.28 0.14 -0.35 -0.35 -0.31 -0.32 0.1 -0.03 -0.3 -0.15 -1.81 -0.6 -0.12 -0.25 -0.02 0.04 -0.15 -0.46 0.57 0.7 0.06 -0.12 0.47 0.15 0.08 -0.02 0.04 0.04 -0.07 0.28 -0.5 0.25 0.4 0.49 0.08 0.23 -0.13 -0.14 0.25 0.02 0.04 0.32 0.13 0.14 0.75 At1g55490 265076_at CPN60B encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. 10 chaperone cofactor dependent protein folding | cell death | systemic acquired resistance | protein folding


Protein folding / chaperonins (chloroplast)


0.82 2.56
At3g18890 0.617
similar to UV-B and ozone similarly regulated protein 1 UOS1 (Pisum sativum) -0.14 0.12 -0.04 0.08 -0.02 -0.1 -0.07 -0.02 0.03 -0.2 0 0.02 -0.18 -0.26 0.02 -0.19 0.01 -0.02 -0.18 0.09 -0.06 -0.51 0.24 -0.02 -0.12 -0.07 0.09 0.13 -0.07 0.09 0.13 -0.01 -0.05 -0.06 0.04 -0.04 0.32 -0.44 0.26 -0.09 0.18 -0.05 0.24 0.02 0.03 -0.14 0.05 0.16 -0.06 0.03 0.06 -0.12 0.11 0.17 -0.36 -0.05 -0.02 0.35 0.14 -0.13 0.09 0.27 -0.78 -0.01 -0.25 -0.02 -0.11 0.06 0.08 -0.07 -1.43 0.12 0.12 0.12 0.12 0.12 0.5 -0.3 0.59 0.24 -0.28 0.16 0.23 0.47 0.16 0.12 0.15 0.21 0.17 0.12 -1.34 0.12 0.37 0.12 0.06 0.12 0.46 0.12 -0.18 0.12 0.13 0.12 0.03 -0.06 -0.42 At3g18890 256655_at
similar to UV-B and ozone similarly regulated protein 1 UOS1 (Pisum sativum) 4



Chloroplastic protein import via envelope membrane | Tic apparatus


0.75 2.02
At3g51820 0.616
chlorophyll synthetase, putative -0.12 0.08 -0.02 -0.02 -0.1 0.08 -0.14 0.25 0.07 -0.13 0.01 -0.01 -0.04 -0.18 -0.01 -0.19 0.12 -0.08 -0.18 0.1 -0.08 -0.45 0.16 0.3 -0.08 0 -0.11 -0.1 0 -0.11 -0.1 0.09 -0.04 0.02 0.07 -0.18 0.23 -0.45 0.21 -0.19 0.12 -0.19 0.11 0.04 0.14 -0.15 -0.1 -0.08 0.08 -0.03 0.08 -0.19 0.25 0.11 -0.22 0.08 0.09 0.25 0.05 0.14 0.13 0.15 -0.53 -0.16 -0.4 -0.23 -0.12 -0.14 -0.17 -0.06 -0.93 0.46 0.25 0.09 0.42 0.04 0.05 -0.39 0.31 0.33 -0.12 0.12 0.25 0.12 0.19 0.16 0.13 0.17 -0.02 0.09 -0.79 0.21 0.33 0.18 -0.15 0.21 -0.19 0 0.21 0.12 -0.22 0.26 0.04 0.02 0.28 At3g51820 246308_at
chlorophyll synthetase, putative 10
biosynthesis of vitamins, cofactors, and prosthetic groups | photosynthesis | biogenesis of chloroplast chlorophyll biosynthesis Porphyrin and chlorophyll metabolism Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Chlorophyll biosynthesis and breakdown
chlorophyll and phytochromobilin metabolism | chlorophyll a biosynthesis
0.70 1.38
At3g44890 0.613 RPL9 50S ribosomal protein L9, chloroplast (CL9) -0.05 -0.01 0.03 0.02 -0.15 0.14 0.05 -0.05 0 -0.04 -0.25 0 -0.1 -0.23 0.04 -0.21 -0.12 -0.07 -0.26 -0.06 -0.16 -0.38 -0.04 -0.21 -0.4 0.06 0.13 0.02 0.06 0.13 0.02 -0.02 -0.16 -0.26 0.03 -0.03 0.19 -0.48 0.28 -0.08 0.19 -0.13 0.24 0.06 0.31 -0.08 0.11 -0.01 0 0.04 0.24 -0.22 0.25 0.31 0.17 0.22 0.22 0.45 0.26 0.21 0.22 0.21 -0.44 -0.16 -0.27 -0.09 0.08 -0.42 -0.2 -0.01 -1.03 -0.09 -0.23 0.02 -0.52 -0.06 0.17 -0.34 0.75 0.97 0.07 -0.08 0.06 0.09 -0.08 0.11 -0.07 0.07 -0.08 0.08 -0.35 0.24 0.25 0.24 0.08 0.11 0.25 -0.07 0.06 -0.14 0.07 0.17 0.13 -0.02 0.04 At3g44890 246339_at RPL9 50S ribosomal protein L9, chloroplast (CL9) 6 protein biosynthesis | plastid large ribosomal subunit protein synthesis | ribosome biogenesis | biogenesis of chloroplast
Ribosome



0.67 2.00
At1g08550 0.608 NPQ1 Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II li -0.21 0.14 0.05 0.05 -0.34 -0.02 -0.08 -0.32 0.23 0.07 -0.15 0.04 0.07 -0.17 0 -0.09 -0.46 -0.22 -0.06 0.02 0.03 -0.38 -0.1 0.12 0.17 0.4 -0.15 -0.25 0.4 -0.15 -0.25 -0.02 0.2 -0.01 -0.28 -0.04 0.09 -0.13 0.05 0.06 0.15 0.02 0.08 0.04 0.33 -0.06 0.19 0.05 0.34 0.08 0.25 0.18 0.17 0.03 -0.54 0.06 -0.28 0.18 0.13 -0.03 0.07 0.16 -0.77 -0.39 -0.68 -0.51 -0.14 0.47 0.23 0.27 -1.79 0.17 0.06 0.22 0.63 0.03 0.25 0.17 0.3 -0.01 0.37 0.43 0.44 0.23 0.14 0.23 0.13 0.15 0.13 0.02 -1.25 0.28 0.39 0.47 -0.46 0.46 -0.22 -0.19 0.32 0.13 -0.34 -0.19 -0.65 0.48 0.07 At1g08550 264799_at NPQ1 Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II li 10 violaxanthin de-epoxidase activity | xanthophyll cycle | xanthophyll metabolism | photosystem II (sensu Viridiplantae)
carotenoid biosynthesis | xanthophyll cycle
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Carotenoid biosynthesis
Carotenoid and abscisic acid metabolism | carotenid biosynthesis
0.97 2.42
At4g31990 0.607 ASP5 encodes a plastid-localized aspartate aminotransferase; encodes a plastid-localized aspartate transporter -0.11 0.01 -0.09 -0.1 0 -0.03 0.02 0.06 -0.05 0.06 0.09 -0.17 -0.26 -0.31 -0.06 -0.23 0.08 -0.21 -0.22 0.03 -0.21 -0.31 0.13 -0.08 -0.36 -0.03 -0.04 -0.18 -0.03 -0.04 -0.18 -0.18 -0.37 -0.49 -0.01 0.02 0.07 -0.44 0.36 0.05 0.38 0.17 0.35 0.18 0.18 -0.12 0.2 0.05 0.03 0.11 0.28 -0.11 0.28 0.1 0.07 0.1 0.13 0.52 0.34 0.14 0.14 0.25 -0.64 0.18 0.11 0.15 0.07 -0.02 -0.04 -0.07 -0.48 -0.21 0.17 -0.07 -0.2 0.05 0 -0.2 0.34 0.37 0.19 -0.34 -0.09 0.06 -0.02 0.01 -0.02 0.13 0.02 0.07 -0.28 -0.03 0.17 0.1 -0.2 -0.04 -0.25 0.04 0.06 0.27 -0.15 0.03 -0.02 0.3 0.47 At4g31990 253481_at ASP5 encodes a plastid-localized aspartate aminotransferase; encodes a plastid-localized aspartate transporter 9 aspartate transaminase activity
asparagine biosynthesis I | aspartate biosynthesis and degradation | asparagine degradation I | aspartate degradation I | aspartate degradation II | glutamine degradation III Carbon fixation | Glutamate metabolism | Alanine and aspartate metabolism | Cysteine metabolism | Arginine and proline metabolism | Tyrosine metabolism | Phenylalanine, tyrosine and tryptophan biosynthesis | Alkaloid biosynthesis I | Novobiocin biosynthesis | Phenylalanine metabolism



0.71 1.16
At5g20720 0.604 CPN20 Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES. -0.07 -0.02 0.03 0.01 -0.04 0.08 0.01 0.03 0.02 -0.12 -0.24 -0.1 -0.13 -0.34 -0.11 -0.3 -0.06 -0.05 -0.26 -0.14 -0.2 -0.32 0.01 -0.13 -0.2 0.04 0.31 0.15 0.04 0.31 0.15 0.04 -0.28 0.02 0.21 0.06 0.31 -0.21 0.19 -0.12 0.15 -0.25 0.19 -0.16 0.22 -0.45 0.15 -0.11 0.25 -0.13 0.19 -0.27 0.36 0.39 0.14 0.17 0.27 0.28 0.34 0.06 0.19 0.17 -0.02 -0.05 -0.01 0.04 0.07 0.05 -0.13 -0.11 -0.33 -0.28 -0.02 -0.11 -0.25 -0.08 0.01 -0.23 0.48 0.81 0.19 -0.2 0.22 0.1 0.09 -0.03 0.05 0.01 -0.1 -0.19 -0.59 -0.23 0.3 0.06 -0.22 0.04 -0.13 -0.27 0.1 0.07 -0.33 0.28 -0.09 -0.06 0.37 At5g20720 246003_at CPN20 Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES. 10 calmodulin binding transport routes | chloroplast transport
Folding, Sorting and Degradation | Protein folding and associated processing Protein folding / chaperonins (chloroplast)


0.65 1.40
At3g10970 0.599
haloacid dehalogenase-like hydrolase family protein, low similarity to genetic modifier (Zea mays) -0.19 0 -0.03 0.02 -0.05 0.11 -0.01 -0.03 0.04 0.12 -0.07 -0.04 -0.05 0.03 0.06 -0.03 0 -0.02 -0.04 0.2 -0.12 -0.18 -0.17 0.13 -0.2 0.07 -0.03 0.06 0.07 -0.03 0.06 -0.24 -0.15 -0.12 -0.4 -0.3 0.01 -0.56 0.56 0.09 0.42 -0.27 0.42 0.06 0.35 -0.1 0.36 -0.05 -0.12 0.12 0.5 -0.11 0.16 0.1 -0.22 0.16 0.06 0.47 0.49 0.33 0.26 0.25 -1.03 -0.04 0 0.04 0.06 0.05 0.28 0.27 -0.67 0.25 -0.1 -0.17 0.26 0.02 -0.1 0.49 -0.12 -0.96 0.3 -0.01 0.05 -0.03 -0.2 0.21 -0.07 0.09 -0.16 -0.07 -0.49 0 0.11 0.03 -0.46 0.04 -0.15 -0.08 -0.13 0.12 -0.23 -0.14 -0.17 0.08 0.56 At3g10970 256440_at
haloacid dehalogenase-like hydrolase family protein, low similarity to genetic modifier (Zea mays) 2

superpathway of serine and glycine biosynthesis II | cysteine biosynthesis II | glycine biosynthesis I | serine biosynthesis | photorespiration




0.91 1.60
At1g12800 0.598
S1 RNA-binding domain-containing protein -0.08 0.06 -0.05 0.13 -0.14 -0.08 0.14 0 0.06 0.03 -0.23 -0.06 0.03 -0.09 -0.02 0.03 0.05 -0.19 0.01 -0.06 -0.24 -0.18 0.04 -0.06 -0.25 -0.04 0.34 0.55 -0.04 0.34 0.55 0.23 0.4 -0.3 -0.11 -0.15 0.22 -0.38 0.28 -0.15 0.14 -0.04 0.28 0.1 0.13 -0.06 0.27 0.2 0.04 0.11 0.13 0.01 0.16 0.02 -0.03 0.13 0.31 0.28 0.27 0.15 0.19 0.49 -0.76 0.48 0.23 0.31 -0.11 0.24 -0.36 -0.21 -1.85 -0.14 0.32 -0.02 0.13 0.28 -0.15 -0.49 0.19 -0.48 -0.01 0 0.03 0.02 -0.04 0.18 0.27 0.17 -0.06 -0.18 -1.34 0 0.22 0.03 -0.36 0.07 -0.27 -0.14 0.09 -0.19 -0.24 -0.18 -0.33 0.3 0.43 At1g12800 261206_at
S1 RNA-binding domain-containing protein 2

Calvin cycle | mannitol degradation | sorbitol fermentation | sorbitol degradation | fructose degradation (anaerobic) | acetate fermentation | glycolysis I | glycolysis IV




0.77 2.40
At1g62750 0.598
elongation factor Tu family protein -0.04 0.1 0.05 0.05 -0.22 -0.18 0.1 0.09 -0.04 0.09 -0.05 -0.16 0.07 -0.64 -0.11 0.09 -0.19 -0.04 0.15 0.04 -0.08 0.03 0.16 0.03 -0.05 0.26 -0.05 0.33 0.26 -0.05 0.33 0.03 -0.25 -0.23 -0.04 0.01 -0.02 -0.57 0.17 -0.21 0.26 0.03 0.18 0.09 0.2 0.11 0.22 0.15 0.1 -0.03 0.33 0.15 0.23 0.19 -0.19 0.28 -0.02 0.25 0.07 0.08 0.15 0.56 -0.83 -0.13 -0.28 -0.2 0.1 -0.24 0.19 0.23 -1.21 -0.2 0.01 -0.04 0.51 0.25 -0.33 0.14 -0.01 -0.55 -0.09 -0.25 0.14 0.14 0.19 0.06 0.14 0.13 0.01 -0.3 -2.33 0.42 0.74 0.22 -0.92 0.21 -0.44 -0.08 0.3 0.19 -0.72 0.73 -0.09 0.36 1.18 At1g62750 262645_at
elongation factor Tu family protein 2


Translation factors



1.04 3.51
At1g11860 0.597
Similar to aminomethyltransferase, mitochondrial precursor from Flaveria anomala -0.24 0.11 0.12 -0.02 -0.15 -0.04 -0.01 0.02 0.01 -0.15 -0.12 -0.01 -0.08 -0.18 -0.05 -0.23 -0.22 -0.01 -0.11 0.04 -0.07 -0.23 0.09 -0.03 0.02 0.24 0.14 0.24 0.24 0.14 0.24 0.03 -0.15 -0.34 0.05 0.02 0.17 0.01 0.13 0.07 0.05 0.12 0.05 0.06 0.32 0.07 0.14 0.01 0.24 0.2 0.36 0.17 0.25 0.27 -0.03 0.1 0.15 0.26 0.17 0.38 0.01 0.14 -0.68 -0.28 -0.43 -0.38 -0.04 -0.27 -0.28 -0.06 -1.45 -0.41 0.08 0.11 0.1 0.22 0.16 -0.28 0.5 -0.2 -0.04 -0.02 0.28 0.17 -0.07 0.09 0.22 0.09 0.11 0.03 -0.71 0.1 0.47 0.08 -0.27 0 0.19 -0.14 0.33 -0.08 -0.23 0.04 -0.33 0.31 -0.2 At1g11860 264394_at
Similar to aminomethyltransferase, mitochondrial precursor from Flaveria anomala 2

glycine degradation I Nitrogen metabolism | Glycine, serine and threonine metabolism | One carbon pool by folate



0.69 1.95
At2g40100 0.595 LHCB4.3 chlorophyll A-B binding protein (LHCB4.3) -0.11 0.04 -0.16 -0.33 -0.19 -0.65 -0.48 0.01 -0.32 -0.24 -0.64 -0.55 -0.13 -0.27 -0.64 -0.19 -0.66 -0.55 -0.23 0.09 -0.39 -0.07 -0.04 0.18 -0.04 -0.4 -0.48 -0.57 -0.4 -0.48 -0.57 -0.3 -0.73 1.02 -0.22 -0.36 -0.42 -0.28 1.15 -0.32 0.85 -0.65 0.74 -0.01 1.34 -0.31 0.3 -0.75 0.33 -0.24 1.32 -0.26 1.34 0.67 -0.03 0.14 0.21 1.25 0.73 0.53 0.32 0.59 -0.36 -0.01 0.19 -0.37 0.1 -0.15 0.01 0.11 -0.49 0.01 -0.16 0.08 0.37 -0.34 0.35 -0.09 0.92 0.44 0.03 -0.17 -0.18 -0.06 -0.21 0.25 0.22 -0.02 -0.01 -0.26 -0.3 0.08 0.56 0.11 -0.37 0.16 -0.17 0.06 0.25 0.02 -0.4 0.08 -0.45 0.82 0.92 At2g40100 265722_at LHCB4.3 chlorophyll A-B binding protein (LHCB4.3) 8



Photosystems | additional photosystem II components | Chlorophyll a/b binding proteins


1.64 2.08
At3g11170 0.593 FAD7 omega-3 fatty acid desaturase, (FAD7, FADD), Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. -0.16 0.01 0 -0.14 -0.19 -0.08 0.06 0.11 0.09 -0.23 -0.05 0.1 0 -0.68 0.28 0.17 0.3 0.09 0.08 -0.09 0.16 0.14 0.17 -0.03 -0.39 -0.04 0.19 0.23 -0.04 0.19 0.23 0.08 0.09 0.02 0.07 -0.03 0.03 -0.52 0.14 -0.23 -0.02 -0.32 0.18 -0.03 0.37 -0.03 0.22 -0.28 0.08 -0.03 0.48 -0.08 0.31 0.33 0.13 0.23 0.04 0.41 0.18 0.35 0.08 0.19 -0.5 -0.35 0.05 -0.28 -0.07 -0.38 0.14 0.16 -0.66 0.11 0.1 0.06 0.05 -0.12 -0.05 -0.07 0.2 0.21 -0.07 -0.01 -0.12 0.05 0.09 0.11 -0.05 0 -0.06 -0.07 -0.9 0.01 0.42 0.04 -0.41 -0.11 -0.08 -0.07 0.11 0.09 -0.64 0.34 -0.42 -0.02 0.26 At3g11170 256417_s_at (m) FAD7 omega-3 fatty acid desaturase, (FAD7, FADD), Chloroplastic enzyme responsible for the synthesis of 16:3 and 18:3 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. 10 omega-3 fatty acid desaturase activity
phospholipid desaturation pathway | glycosylglyceride desaturation pathway Androgen and estrogen metabolism | 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation | Benzoate degradation via hydroxylation Leaf Glycerolipid Biosynthesis | Leaf Glycerolipid Biosynthesis in Plastid Synthesis of membrane lipids in plastids

0.83 1.38
At4g17600 0.593 LIL3:1 lil3 protein -0.08 0.03 0.02 -0.06 -0.13 0.01 0.08 0.07 0.03 -0.01 -0.01 0.09 0.05 -0.25 0.06 -0.12 -0.11 -0.02 -0.04 0.02 -0.03 -0.13 0.01 0.06 -0.1 -0.03 0.28 0.28 -0.03 0.28 0.28 0 -0.08 -0.2 -0.03 -0.14 0.19 -0.41 0.01 -0.17 0.1 -0.32 0.17 0.02 0.21 -0.02 0.14 0.01 -0.01 -0.01 0.11 -0.17 0.25 0.18 -0.3 0.18 0.07 0.27 0.16 0.28 -0.01 0.22 -0.92 -0.1 -0.23 -0.18 0.14 -0.15 -0.15 -0.06 -1.12 -0.66 0.5 -0.32 -0.26 -0.27 0.78 -0.19 0.21 0.57 0.26 0.02 0.01 0.09 0.01 0.12 -0.01 0.11 0.02 0.12 -0.92 0.17 0.31 0.19 -0.16 0.23 -0.08 -0.26 0.11 -0.03 -0.1 0.24 -0.18 0.48 0.42 At4g17600 245354_at LIL3:1 lil3 protein 8 regulation of transcription


Photosystems | additional photosystem II components | Early light-inducible proteins


0.63 1.90
At5g05580 0.593 FAD8 omega-3 fatty acid desaturase, chloroplast, temperature-sensitive -0.16 0.01 0 -0.14 -0.19 -0.08 0.06 0.11 0.09 -0.23 -0.05 0.1 0 -0.68 0.28 0.17 0.3 0.09 0.08 -0.09 0.16 0.14 0.17 -0.03 -0.39 -0.04 0.19 0.23 -0.04 0.19 0.23 0.08 0.09 0.02 0.07 -0.03 0.03 -0.52 0.14 -0.23 -0.02 -0.32 0.18 -0.03 0.37 -0.03 0.22 -0.28 0.08 -0.03 0.48 -0.08 0.31 0.33 0.13 0.23 0.04 0.41 0.18 0.35 0.08 0.19 -0.5 -0.35 0.05 -0.28 -0.07 -0.38 0.14 0.16 -0.66 0.11 0.1 0.06 0.05 -0.12 -0.05 -0.07 0.2 0.21 -0.07 -0.01 -0.12 0.05 0.09 0.11 -0.05 0 -0.06 -0.07 -0.9 0.01 0.42 0.04 -0.41 -0.11 -0.08 -0.07 0.11 0.09 -0.64 0.34 -0.42 -0.02 0.26 At5g05580 256417_s_at (m) FAD8 omega-3 fatty acid desaturase, chloroplast, temperature-sensitive 10 response to temperature | omega-3 fatty acid desaturase activity
phospholipid desaturation pathway | glycosylglyceride desaturation pathway Androgen and estrogen metabolism | 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation | Benzoate degradation via hydroxylation Leaf Glycerolipid Biosynthesis | Leaf Glycerolipid Biosynthesis in Plastid Synthesis of membrane lipids in plastids

0.83 1.38
At2g26080 0.590
glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative, strong similarity to Glycine dehydrogenase (decarboxylating) from Pisum sativum -0.23 0.04 0.12 -0.08 -0.28 -0.1 -0.07 0 -0.06 -0.15 -0.16 -0.08 -0.28 -0.28 -0.11 -0.26 -0.42 -0.09 -0.07 -0.08 -0.15 -0.14 0.08 0.06 0.22 0.25 0.51 0.47 0.25 0.51 0.47 0.05 0.16 0.06 -0.01 -0.11 -0.13 -0.32 0.28 -0.04 0.22 0.08 0.15 0.11 0.47 0.25 0.15 0.08 0.21 -0.07 0.22 0.27 0.28 0.33 -0.27 0.38 -0.01 0.31 0.17 0.3 0.02 0.28 -0.6 0.2 0.08 0.01 -0.01 0.27 0.28 0.38 -1.28 -0.41 -0.1 0.15 -0.16 0.08 -0.02 0.12 -0.07 -1.08 0.22 -0.45 -0.12 -0.02 0.04 0.15 0.15 0.11 -0.1 0.03 -0.81 -0.06 0.39 -0.07 -0.72 -0.03 -0.27 0.03 0.05 -0.06 -0.73 -0.02 -0.87 0.47 1.1 At2g26080 266892_at
glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative, strong similarity to Glycine dehydrogenase (decarboxylating) from Pisum sativum 4

glycine degradation I Glycine, serine and threonine metabolism



1.17 2.38
At5g55700 0.585
glycosyl hydrolase family 14 protein, similar to beta-amylase enzyme (Arabidopsis thaliana) -0.28 -0.07 -0.01 -0.16 -0.31 -0.04 -0.14 -0.11 0 -0.11 -0.19 -0.12 -0.14 -0.45 -0.04 -0.16 -0.37 0.03 -0.08 -0.16 0.05 -0.19 -0.11 -0.15 -0.21 -0.16 0.28 -0.06 -0.16 0.28 -0.06 -0.11 -0.05 -0.11 -0.27 -0.18 0.03 -0.61 0.42 -0.04 0.49 -0.21 0.45 0.09 0.47 0.11 0.47 -0.05 0.28 0.02 0.53 0.03 0.59 0.5 0.01 0.56 0.23 0.6 0.4 0.44 0.24 0.27 -0.85 0.03 0.03 0.07 -0.09 -0.01 0.12 0.06 -0.21 0.19 -0.01 -0.04 -0.3 -0.1 0.13 -0.01 0.11 0.28 0.01 0.02 0.02 -0.06 -0.11 -0.21 0.05 -0.05 -0.02 0.14 -0.57 -0.12 0.07 -0.12 -0.12 -0.12 -0.02 -0.05 -0.07 -0.16 -0.21 -0.11 0.21 -0.01 0.01 At5g55700 248026_at (m)
glycosyl hydrolase family 14 protein, similar to beta-amylase enzyme (Arabidopsis thaliana) 2
C-compound and carbohydrate metabolism | metabolism of energy reserves (e.g. glycogen, trehalose) Calvin cycle | starch degradation | ribose degradation | non-oxidative branch of the pentose phosphate pathway | superpathway of gluconate degradation
Cell Wall Carbohydrate Metabolism | starch metabolism


0.79 1.45
At2g28000 0.583 CPN60A Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development. -0.14 -0.01 -0.14 -0.02 -0.25 -0.06 -0.08 0.02 0.02 -0.12 -0.07 -0.06 -0.28 -0.48 -0.02 -0.17 -0.12 -0.03 -0.11 -0.12 -0.12 -0.35 0 -0.19 -0.41 0.17 0.23 0.32 0.17 0.23 0.32 0.05 -0.28 0.16 0.16 0.09 0.43 -0.13 0.21 0.05 0.19 -0.21 0.17 0.12 0.06 0.01 0.06 0.09 -0.28 0.15 0.25 -0.17 0.28 0.28 0.04 0.1 0.08 0.09 0.11 0.34 0.19 0.2 -0.37 -0.49 -0.38 -0.49 0.47 0.07 -0.08 0.11 -0.92 -0.63 0.08 -0.15 0.14 0.22 -0.08 -0.16 0.59 0.74 -0.1 -0.03 0.25 0.14 0.12 -0.06 0.07 0.1 -0.08 -0.03 -0.59 -0.11 0.33 0.15 -0.44 0.01 -0.19 -0.33 0.14 0.17 -0.27 0.42 -0.01 -0.24 0.97 At2g28000 264069_at CPN60A Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development. 10 chloroplast organization and biogenesis | embryonic development | protein folding


Protein folding / chaperonins (chloroplast)


0.88 1.89
At4g12310 0.576 CYP706A5 cytochrome P450 family protein -0.14 0.22 -0.01 -0.24 -0.73 -0.12 0.02 0.13 -0.02 -0.07 -0.28 -0.05 0.19 -1.52 -0.22 -0.04 -0.61 -0.25 0.15 -0.01 0.23 0.31 0.04 0.36 0.36 0.7 0.2 0.28 0.7 0.2 0.28 0.04 -0.09 0.23 -0.06 0.13 -0.38 -1.48 0.78 -0.17 0.43 -0.16 0.31 0.01 0.86 0.07 0.49 -0.21 0.24 0.14 0.7 0.04 0.78 0.3 -0.42 0.47 -0.42 0.74 0.57 0.21 0.1 0.46 -1.92 -0.28 -0.91 -0.31 0.21 -0.14 0.09 0.08 -1.18 0.4 -0.11 -0.07 0.3 -0.32 0.25 -0.06 -0.81 -0.64 0.6 0.32 0.35 0.02 0.15 0.36 0.28 0.14 0.1 -0.72 -2.13 0.28 0.83 0.32 -0.93 0.31 -0.21 0.02 0.57 0.41 -1.14 0.57 -1.26 0.67 0.68 At4g12310 254835_s_at CYP706A5 cytochrome P450 family protein 1
biosynthesis of secondary products derived from primary amino acids | biosynthesis of glycosinolates and derivatives




cytochrome P450 family 1.88 2.99
At4g37930 0.574 SHM1 mitochondrial serine hydroxymethyltransferase, functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate -0.08 0.08 0.17 -0.01 -0.03 0.07 -0.04 -0.03 0.05 -0.15 -0.11 0 -0.11 -0.15 -0.03 -0.28 -0.08 -0.01 -0.25 -0.07 -0.1 -0.25 -0.09 0.13 -0.21 0.13 0.08 0.15 0.13 0.08 0.15 0.12 0.1 0.01 0.08 0.05 -0.01 -0.47 0.2 -0.13 0.17 0.08 0.12 0 0.22 -0.07 0.09 0.12 0.51 0.12 0.13 0.09 0.37 0.38 0.11 0.1 0.19 0.36 0.1 0.31 0.17 0.14 -0.22 0.22 0.09 0.32 -0.03 -0.57 0.04 0.12 -1.08 -0.25 0.08 0.02 0.28 -0.05 0.02 -0.02 0.02 0.11 0.08 -0.06 0.17 0.16 0.09 0.15 0.08 0.12 0.02 0.04 -2.48 0.25 0.38 0.26 -0.82 0.32 -0.18 0.02 0.19 0.21 -0.73 0.53 -0.77 0.12 -0.15 At4g37930 253009_at SHM1 mitochondrial serine hydroxymethyltransferase, functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate 6 glycine decarboxylation via glycine cleavage system | glycine hydroxymethyltransferase activity amino acid metabolism superpathway of serine and glycine biosynthesis II | glycine biosynthesis I | formylTHF biosynthesis | serine-isocitrate lyase pathway | formaldehyde assimilation I (serine pathway) | photorespiration Methane metabolism | Glycine, serine and threonine metabolism | Lysine degradation | Cyanoamino acid metabolism | One carbon pool by folate Biosynthesis of Amino Acids and Derivatives | Glutathione metabolism


0.91 3.01
At4g04350 0.573
similar to Leucyl-tRNA synthetase (Bacillus subtilis) -0.15 0.12 0.09 -0.07 -0.15 -0.01 0.01 0.26 0.15 -0.03 0.05 -0.04 -0.07 -0.04 0.25 -0.16 0.08 0.11 0.06 0.23 -0.08 -0.26 0.08 0.39 0.04 0.06 -0.02 0.3 0.06 -0.02 0.3 0.03 -0.08 0.18 0.04 0.14 0.27 -0.17 0.25 -0.37 0.01 -0.45 0.13 0.16 0.04 -0.16 -0.05 -0.07 -0.11 -0.03 0.16 0.11 0.02 -0.03 -0.06 0.01 -0.18 0.46 0.27 -0.2 -0.18 0.07 -0.99 -0.39 -0.45 -0.26 -0.33 0.2 -0.04 0.01 -1.57 0.12 0.06 0.6 -0.05 0.09 -0.14 -0.09 0.74 -0.25 0.38 0 0.18 0.21 0.11 0.09 0.18 0.1 0.08 0.12 -0.77 0.22 0.28 0.33 -0.37 -0.01 -0.12 0.24 0.08 0.12 -0.48 0.28 -0.34 -0.3 0.31 At4g04350 255328_at
similar to Leucyl-tRNA synthetase (Bacillus subtilis) 2
protein synthesis | aminoacyl-tRNA-synthetases tRNA charging pathway Valine, leucine and isoleucine biosynthesis | Aminoacyl-tRNA biosynthesis



0.76 2.31
At4g17300 0.573 NS1 Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis. -0.1 -0.07 0.18 0.17 -0.16 0.11 0.11 0.02 0.05 0.04 -0.14 -0.05 -0.06 0.26 -0.15 -0.08 -0.08 -0.03 -0.15 0.08 -0.31 -0.27 0.07 -0.03 -0.24 0.22 0.51 0.09 0.22 0.51 0.09 -0.03 0.11 -0.09 -0.1 -0.36 0.07 -0.52 0.56 -0.15 0.24 0.14 0.1 -0.08 0.25 -0.17 0.12 0.05 -0.04 0.07 0.12 -0.22 0.06 0.37 0.21 0.34 0.2 0.39 0.31 0.1 -0.03 0.27 -0.33 0.27 0.09 0.08 0.34 0.03 0.12 0.03 -0.81 -0.6 0 -0.02 -0.11 0.21 -0.16 -0.11 -0.25 0.03 0.06 -0.23 0.23 0.07 -0.21 -0.04 0.1 0.15 -0.15 0.01 -0.71 0.1 -0.01 -0.09 -0.19 -0.04 -0.09 -0.04 -0.16 -0.41 -0.41 -0.19 -0.09 -0.22 0.6 At4g17300 245413_at NS1 Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis. 4
protein synthesis | aminoacyl-tRNA-synthetases tRNA charging pathway Alanine and aspartate metabolism | Aminoacyl-tRNA biosynthesis



0.76 1.41
At5g23120 0.572 HCF136 encodes a stability and/or assembly factor of photosystem II -0.07 0.07 -0.08 -0.08 -0.18 -0.14 0.1 -0.06 -0.07 -0.07 -0.21 -0.15 -0.04 0.08 -0.08 -0.13 -0.14 -0.09 0.06 -0.03 -0.1 -0.11 -0.02 0.04 0.16 0.14 -0.11 0.05 0.14 -0.11 0.05 -0.04 -0.03 -0.28 -0.15 -0.24 0.27 -0.28 0.02 0.03 0.17 -0.06 0.07 0.11 0.36 0.16 0.1 0.06 0.32 -0.16 0.19 0.09 0.13 0.24 0.03 0.24 -0.01 0.12 0.06 0.26 0.1 0.26 -0.5 0.11 0.18 0.12 -0.26 -0.24 0.06 0.21 -0.75 0.02 -0.16 0.03 0.16 0.38 0.01 0.17 0.02 -0.1 0.08 -0.03 0.15 -0.01 -0.13 0.09 0.15 0.05 0.01 -0.1 -0.68 0.22 0.54 0.07 -0.4 0.08 -0.31 -0.11 0.16 -0.12 -0.38 0.06 -0.3 0.23 0.27 At5g23120 249875_at HCF136 encodes a stability and/or assembly factor of photosystem II 10 protein binding | plastid organization and biogenesis | protein complex assembly


Thylakoid biogenesis and photosystem assembly


0.57 1.29
At3g49470 0.570
nascent polypeptide-associated complex (NAC) domain-containing protein -0.06 0.08 0.05 -0.08 -0.18 0.05 0.01 0.04 0.01 0.02 -0.1 -0.06 -0.23 -0.48 -0.05 -0.36 -0.31 -0.25 -0.2 0.07 -0.24 -0.37 -0.07 -0.07 -0.24 0.1 0.45 0.59 0.1 0.45 0.59 0.07 -0.14 -0.01 0.09 -0.07 0.16 -0.44 0.14 0.07 0.04 -0.1 0.03 0.03 0.13 0.11 0.04 0.15 0.04 -0.06 0.22 -0.05 0.15 0.07 -0.46 0.18 -0.12 0.22 0.18 0.14 0.13 0.17 -1.59 0.06 -0.14 -0.02 0.16 -0.33 0.07 0.08 -0.77 -0.06 0.05 -0.06 0.13 0.03 -0.05 0.06 0.67 0.66 0.27 -0.14 0.18 0.13 0.12 0.04 0.18 -0.02 0.07 0.08 -0.68 0.3 0.22 0.15 -0.38 0.03 0.03 -0.12 0.13 0.05 -0.27 0.05 -0.26 0.13 0.39 At3g49470 252277_at
nascent polypeptide-associated complex (NAC) domain-containing protein 2
protein synthesis | translational control
Transcription | Basal transcription factors



0.87 2.26
At2g01110 0.569 APG2 thylakoid membrane formation protein / cpTatC (APG2); mutant is Albino and pale green; Chloroplast Protein Translocation (tatC) -0.11 0.01 -0.07 0.15 -0.02 -0.03 0.2 -0.09 -0.03 0 -0.21 -0.1 0 -0.02 -0.12 0.01 -0.3 -0.25 0.11 0.05 -0.01 -0.15 0.07 0.02 -0.03 -0.19 0.19 -0.76 -0.19 0.19 -0.76 -0.11 0.04 -0.35 -0.32 -0.17 0.06 -0.51 0.37 -0.13 0.27 0.17 0.25 -0.08 0.36 -0.05 0.32 0.08 0.12 -0.08 0.38 0.15 0.06 0.12 0.07 0.15 -0.09 0.33 0.42 0.1 0.17 0.2 -0.61 -0.05 -0.17 -0.16 -0.11 0.53 0.19 0.25 -0.52 0.39 0.05 0.05 0.18 0.22 0 0.2 -0.39 -0.3 0.13 -0.27 0.1 0.07 -0.17 0.01 -0.04 0.21 -0.03 0.02 -0.7 -0.09 0.48 0.01 -0.38 0.02 -0.04 0.1 0.17 0.02 -0.24 0.13 0.08 0.19 0.67 At2g01110 262202_at APG2 thylakoid membrane formation protein / cpTatC (APG2); mutant is Albino and pale green; Chloroplast Protein Translocation (tatC) 10 thylakoid membrane organization and biogenesis

Folding, Sorting and Degradation | Protein export Pathway for nuclear-encoded, thylakoid-localized proteins | Delta-pH pathway


0.86 1.43
At4g33760 0.569
tRNA synthetase class II (D, K and N) family protein, similar to Aspartyl-tRNA synthetase (Thermus thermophilus) -0.22 -0.03 0.22 0 -0.11 0.2 -0.1 -0.07 0.31 -0.1 -0.18 0.31 -0.21 -0.22 0.07 -0.01 -0.17 0.04 -0.03 -0.1 0.13 -0.35 0.03 -0.11 -0.11 -0.04 0.07 0.24 -0.04 0.07 0.24 -0.3 -0.17 0.26 -0.12 0.04 0.33 -0.3 0.19 -0.21 0.01 -0.34 0.13 0.12 -0.11 0.03 0 -0.01 -0.1 0.22 0.18 -0.1 0.1 0.22 -0.16 -0.09 -0.07 0.12 0.19 0.06 -0.02 0.01 -0.13 -0.19 -0.18 -0.23 0.16 0.21 0.02 0.01 -0.8 0.02 0.01 0.21 -0.43 -0.13 -0.02 -0.26 0.81 0.42 -0.1 0.01 0.21 0.05 0.1 -0.16 0.22 0.15 0.17 0.14 -0.09 -0.03 0.2 -0.03 -0.27 -0.24 -0.2 0.08 0 0.01 -0.13 0 0.22 -0.33 0.67 At4g33760 253295_at
tRNA synthetase class II (D, K and N) family protein, similar to Aspartyl-tRNA synthetase (Thermus thermophilus) 2
protein synthesis | aminoacyl-tRNA-synthetases tRNA charging pathway Alanine and aspartate metabolism | Aminoacyl-tRNA biosynthesis



0.60 1.61
At4g14690 0.566 ELIP2 chlorophyll A-B binding family protein. Encodes an early light-induced protein. -0.1 -0.1 -0.16 -0.48 -0.27 -0.55 -0.88 -0.11 -0.5 -0.52 -0.06 -0.31 -0.87 0.66 -0.73 -0.81 -0.93 -0.64 -0.41 0.07 -0.37 -0.67 -0.18 -1.01 -1.89 0.56 0.24 0.5 0.56 0.24 0.5 -0.1 -0.1 0.35 0.16 0.65 -0.48 -0.89 0.74 -0.2 -0.2 -0.28 0.39 -0.02 0.85 -0.28 0.15 -1.43 0.12 -0.45 1.11 -0.35 1.22 0.25 0.02 -0.35 0.56 0.87 0.86 0.47 1.06 0.35 -0.67 0.34 1.58 0.21 0.19 1.97 0.74 0.46 -0.14 0.16 0.33 -0.12 0.19 0.66 -0.12 0.67 0.86 -0.1 -0.1 -0.1 -0.1 -0.3 -0.1 0.13 -0.1 -0.13 -0.05 -1.58 -3.38 0.3 1.99 -0.13 -2.16 -0.11 -0.7 -0.15 0.47 0.19 -3.1 1.12 -0.52 -0.1 5.66 At4g14690 245306_at ELIP2 chlorophyll A-B binding family protein. Encodes an early light-induced protein. 8
photosynthesis | stress response

Photosystems | additional photosystem II components | Early light-inducible proteins


2.46 9.04
At3g62120 0.564
tRNA synthetase class II (G, H, P and S) family protein -0.08 -0.07 -0.14 0.05 -0.1 -0.18 -0.07 0.1 -0.04 -0.13 -0.05 -0.03 -0.14 -0.53 -0.09 -0.21 -0.16 -0.1 -0.19 -0.06 -0.11 -0.23 -0.02 -0.2 -0.36 0 0.16 0.25 0 0.16 0.25 -0.27 -0.41 -0.16 0.02 -0.06 0.03 -0.44 0.33 -0.14 0.28 -0.15 0.39 -0.02 0.26 -0.05 0.26 0.02 0.19 0.11 0.15 -0.07 0.45 0.36 0.08 0.23 0.44 0.35 0.23 0.23 0.27 0.36 -0.21 0.08 -0.04 0.13 0.33 0.38 0.08 0.07 -0.56 -0.45 -0.15 -0.11 -0.21 -0.07 0.01 -0.03 0.39 0.28 0.14 -0.22 0.07 0.02 0.02 -0.1 -0.02 0.07 -0.04 -0.05 -0.09 0.02 -0.11 -0.08 -0.01 -0.08 0 -0.08 -0.03 -0.19 -0.05 -0.22 -0.01 -0.12 0.3 At3g62120 251264_at
tRNA synthetase class II (G, H, P and S) family protein 2
protein synthesis | aminoacyl-tRNA-synthetases tRNA charging pathway Arginine and proline metabolism | Aminoacyl-tRNA biosynthesis



0.70 1.02
At5g62790 0.558 DXR 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. -0.31 0.08 0.18 0.15 -0.18 0.15 0.14 -0.13 -0.08 0.09 -0.15 0.04 -0.06 0.28 -0.04 -0.11 -0.02 -0.12 -0.15 -0.2 -0.22 -0.23 -0.08 -0.01 -0.12 -0.07 -0.19 -0.07 -0.07 -0.19 -0.07 0 -0.07 -0.49 0 -0.03 0.06 -0.49 0.4 0.15 0.07 0 0.27 0.27 0.28 0.08 0.12 0.17 0.2 0.38 0.22 0.21 0.18 0.25 -0.14 0.27 0.13 0.52 0.18 0.25 0.27 0.24 -0.56 0.15 -0.13 0.08 -0.27 0.19 -0.33 -0.04 -0.56 0.13 0.1 0.11 -0.14 -0.14 -0.05 -0.46 0.45 -0.08 0.07 -0.13 -0.02 0.09 0.04 0.11 0.07 0.24 0.12 0 -0.86 0.13 0.27 0.04 -0.13 0.04 -0.05 -0.12 0.11 -0.1 -0.03 -0.08 -0.23 -0.07 -0.12 At5g62790 247401_at DXR 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. 10 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | isoprenoid biosynthesis lipid, fatty acid and isoprenoid biosynthesis | isoprenoid biosynthesis isopentenyl diphosphate biosynthesis -- mevalonate-independent Biosynthesis of steroids Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Biosynthesis of prenyl diphosphates
IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis | MEP (methylerythritol P) pathway, plastids
0.71 1.38
At3g04790 0.556 At3g04790.1 ribose 5-phosphate isomerase-related, similar to ribose-5-phosphate isomerase GI:18654317 from (Spinacia oleracea) -0.05 0.06 0.08 -0.05 -0.05 0.02 -0.01 0.06 0.02 -0.11 -0.17 -0.17 -0.09 -0.46 -0.09 -0.25 -0.1 -0.18 -0.3 -0.02 -0.3 -0.42 0.04 -0.11 0 0.06 0.21 0.24 0.06 0.21 0.24 0.35 -0.06 0.13 0.03 -0.08 0.23 -0.44 0.09 -0.1 0.07 0.01 -0.05 -0.14 0.11 -0.22 -0.03 -0.03 0.13 -0.12 0.12 -0.26 0.21 0.23 -0.12 -0.15 -0.07 0.08 -0.01 0 0.08 -0.16 -0.8 -0.04 -0.31 -0.03 0.14 -0.18 -0.07 0.01 -0.32 0.28 0.1 -0.42 0.02 -0.17 0.06 -0.01 0.4 0.32 0.26 -0.05 0.25 0.09 0.07 0.37 0.12 0.12 -0.19 0.06 -0.5 0.08 0.46 0.09 -0.21 0.13 0.06 0.11 0.2 -0.01 -0.21 0.3 0.02 0.41 0.76 At3g04790 259098_at At3g04790.1 ribose 5-phosphate isomerase-related, similar to ribose-5-phosphate isomerase GI:18654317 from (Spinacia oleracea) 2
C-compound and carbohydrate metabolism | glycolysis and gluconeogenesis | photosynthesis Calvin cycle | ribose degradation | non-oxidative branch of the pentose phosphate pathway | superpathway of gluconate degradation Pentose phosphate pathway | Carbon fixation



0.74 1.56
At4g30950 0.554 FAD6 omega-6 fatty acid desaturase; Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to sus -0.17 0.07 0.12 0.12 0.01 0.05 0.05 0.07 -0.02 -0.09 -0.14 -0.05 -0.12 -0.14 -0.06 -0.17 -0.06 -0.05 -0.16 -0.05 -0.11 -0.24 0.01 0.08 -0.03 0.05 -0.11 -0.16 0.05 -0.11 -0.16 0.03 -0.03 -0.13 0.03 0.01 0.25 -0.36 0.16 0.15 0.01 0.33 0.14 0.01 0.17 0.08 -0.02 0.18 0.17 0.07 -0.02 0.11 0.19 0.2 -0.01 0.15 -0.09 0.24 0.18 0.1 -0.06 -0.07 -0.93 0.01 -0.21 0.05 0.01 -0.04 -0.04 0.1 -0.91 0.28 0.04 0.06 0.05 0.06 0.06 -0.16 0.24 0.28 -0.09 -0.07 0.16 0.2 0.13 0.07 -0.01 0.14 -0.02 0.01 -0.41 0.13 0.36 0.14 -0.19 0.13 -0.01 -0.17 0.19 0.06 -0.12 0.12 -0.11 -0.05 -0.22 At4g30950 253547_at FAD6 omega-6 fatty acid desaturase; Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to sus 10 omega-6 fatty acid desaturase activity | photoinhibition | photoinhibition | fatty acid biosynthesis lipid, fatty acid and isoprenoid metabolism phospholipid desaturation pathway | glycosylglyceride desaturation pathway Androgen and estrogen metabolism | 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation | Benzoate degradation via hydroxylation Leaf Glycerolipid Biosynthesis | Leaf Glycerolipid Biosynthesis in Plastid Synthesis of membrane lipids in plastids

0.46 1.28
At5g49910 0.554 CPHSC70-2 heat shock protein 70 / HSP70 (HSC70-7) -0.14 0.03 -0.03 0.03 -0.18 -0.11 0.07 0.26 -0.12 -0.05 -0.15 -0.18 -0.17 -0.92 -0.11 -0.37 0.01 -0.28 -0.2 -0.07 -0.32 -0.42 0.16 0.11 -0.21 0.47 0.73 1.34 0.47 0.73 1.34 -0.24 -0.65 0.09 0.16 0.23 0.39 -0.25 0.32 0.05 0.18 -0.36 0.25 0.02 -0.07 -0.13 -0.06 0.09 -0.38 0.24 0.01 -0.18 0.24 0.01 -0.27 0.06 0.18 0.41 0.37 0.1 0.03 0.27 -1.04 -0.68 -0.88 -0.8 0.38 -0.28 0.03 0.03 -1.46 0.1 0.17 -0.15 0.12 -0.03 0.13 -0.15 0.42 -0.03 0.25 -0.28 0.07 0.22 0.15 0 0.17 0.02 -0.04 -0.23 -1.09 -0.34 0.65 0.56 -0.53 0.42 -0.23 -0.3 0.3 0.7 -0.8 1.07 -0.56 -0.21 1.33 At5g49910 248582_at CPHSC70-2 heat shock protein 70 / HSP70 (HSC70-7) 6 response to heat | protein folding

Folding, Sorting and Degradation | Protein folding and associated processing



1.53 2.79
At1g06950 0.552
Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chlorplast and chloroplast biogenesis. 0 0.05 0.06 0.2 -0.16 -0.06 0.2 -0.05 -0.08 0.01 -0.15 -0.17 -0.03 -0.67 -0.03 0 -0.03 -0.28 0.07 0.05 -0.3 -0.3 -0.01 -0.01 0.09 0.1 0.05 0.14 0.1 0.05 0.14 0.09 -0.03 0.07 0.01 -0.02 0.25 -0.35 0.12 -0.23 0.07 -0.32 0.15 0.11 -0.07 -0.06 0.06 0.03 -0.11 0.1 -0.03 -0.41 0.18 -0.03 -0.11 0.08 0.2 0.22 0.16 0.16 0.08 0.23 -0.51 -0.3 -0.25 -0.2 0.33 0.02 0.04 0.15 -1.11 0.05 -0.05 0.01 0.04 0.03 -0.09 -0.23 0.33 0.48 -0.03 -0.09 0.38 0.19 0.11 0.01 0.14 0.15 -0.05 -0.04 0.03 0.11 0.16 0.05 0.12 0.12 -0.13 -0.08 0.11 0.04 0.14 -0.22 0.25 -0.43 0.67 At1g06950 260815_at
Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chlorplast and chloroplast biogenesis. 4 chloroplast organization and biogenesis | chloroplast stroma protein import


Chloroplastic protein import via envelope membrane | Tic apparatus


0.60 1.79
At1g56500 0.552
haloacid dehalogenase-like hydrolase family protein 0.01 0.03 0.12 -0.01 -0.07 -0.13 0.02 -0.16 -0.2 0.04 -0.19 -0.04 -0.16 -0.15 -0.02 -0.26 -0.21 -0.09 -0.04 0.07 -0.2 -0.22 -0.15 0.05 -0.16 0.03 0.37 0.04 0.03 0.37 0.04 -0.05 0.01 -0.11 -0.23 -0.21 0.06 -0.57 0.12 0.08 0.06 0.11 0.16 0.21 0.35 0.11 0.06 0.14 0.28 0.13 0.14 0.12 0.28 0.23 -0.03 -0.02 0.05 0.21 0.05 0.19 0.28 0.27 -0.6 -0.03 -0.12 0 0.05 -0.33 0.15 0.15 -0.23 0.03 -0.11 0.1 -0.03 0.04 0.13 0.21 0.24 0.15 0.23 -0.54 -0.32 0.05 -0.01 0.13 0.05 0.14 0.03 0.28 -1.04 0.34 0.24 0.09 -0.4 0.2 -0.04 0.04 0.1 0.08 -0.37 0.12 -0.36 0.09 -0.2 At1g56500 259603_at
haloacid dehalogenase-like hydrolase family protein 2

superpathway of serine and glycine biosynthesis II | cysteine biosynthesis II | glycine biosynthesis I | serine biosynthesis | photorespiration




0.66 1.41
At3g25660 0.550
similar to Glutamyl-tRNA(Gln) amidotransferase subunit A (Bacillus subtilis) -0.15 0.03 -0.08 0.16 0.01 -0.06 0.28 0.1 -0.04 0.02 -0.09 -0.19 -0.03 0.01 0.01 -0.04 -0.09 -0.12 -0.13 0.12 -0.09 -0.14 0.2 -0.09 -0.39 -0.04 0.73 0.27 -0.04 0.73 0.27 0.09 0.22 -0.09 0.08 -0.09 0.36 -0.23 0.11 -0.23 0.11 -0.2 0 -0.14 0.01 -0.13 -0.02 -0.01 -0.28 -0.04 0.1 -0.28 -0.06 -0.14 -0.3 -0.02 -0.09 0.16 0.04 0 -0.06 0.02 -0.28 -0.24 -0.28 -0.37 0.24 0.07 0.12 0.08 -0.93 -0.04 0.13 0.1 -0.16 0.03 0.07 -0.04 0.97 0.73 0.15 0.02 0.19 0.1 0.07 0.01 0.04 0.19 0.1 0.1 -0.55 0.12 0.04 0.22 -0.19 0.13 -0.11 -0.05 -0.01 -0.12 -0.07 -0.16 -0.02 -0.13 -0.26 At3g25660 256728_at
similar to Glutamyl-tRNA(Gln) amidotransferase subunit A (Bacillus subtilis) 2


Other translation factors



0.58 1.90
At3g52380 0.548 CP33 similar to chloroplast RNA-binding protein (cp33) (Arabidopsis thaliana) -0.04 0.07 0.02 0.06 -0.11 -0.06 0 0.18 -0.02 -0.01 -0.03 -0.03 0 -0.77 -0.03 -0.07 0.04 -0.03 0.07 0.07 -0.03 -0.16 0.19 0.14 0.07 0.07 0.16 0.37 0.07 0.16 0.37 0.17 -0.16 -0.06 0 -0.12 0.09 -0.22 0.23 -0.26 0.14 -0.44 0.14 -0.03 0.24 -0.27 0.17 -0.04 -0.08 0.06 0.2 -0.42 0.03 0.13 -0.41 0.07 -0.03 0.21 0.13 -0.12 0.16 0.14 -0.87 -0.44 -0.51 -0.32 0.37 -0.01 -0.08 -0.01 -1.68 -0.17 -0.03 -0.22 -0.26 0.03 -0.06 -0.26 0.59 0.83 0.1 -0.03 0.33 0.23 0.08 0.16 0.12 0.03 0.12 0.37 -0.24 0.19 -0.02 0.45 0.02 0.3 0.16 0.18 -0.07 -0.02 -0.02 0.09 -0.4 0.26 0.35 At3g52380 256678_at CP33 similar to chloroplast RNA-binding protein (cp33) (Arabidopsis thaliana) 4
biogenesis of chloroplast

mRNA processing in chloroplast


0.80 2.51
At2g45770 0.546 CPFTSY signal recognition particle receptor protein, chloroplast (FTSY), similar to Cell division protein ftsY homolog (Aquifex aeolicus) -0.03 0.03 0.08 0.12 -0.19 0.01 -0.01 -0.27 0.14 -0.14 -0.17 -0.15 -0.1 0.06 0.07 -0.3 -0.21 -0.28 -0.26 0.02 -0.25 -0.46 -0.08 0.07 -0.09 -0.19 0.04 -0.03 -0.19 0.04 -0.03 0 -0.17 -0.28 -0.22 0 0.07 -0.17 0.11 -0.19 0.15 -0.08 0.19 0.09 0.07 -0.14 0.08 -0.13 -0.22 0 0.1 -0.15 0.11 -0.16 -0.07 -0.03 0.2 0.18 0.31 -0.11 -0.01 0.1 0.01 0.1 -0.21 -0.12 0.02 -0.01 0.11 -0.02 -0.61 0.49 0.47 0.02 -0.44 0.16 -0.11 -0.25 0.31 0.02 0.06 0.02 0.1 0.01 -0.12 0.2 0.1 0.19 -0.16 0.04 -0.14 0.12 0.28 0.19 0.1 0.34 0.05 0.06 0.25 0.16 0.31 0.12 0.03 0.28 0.54 At2g45770 266867_at CPFTSY signal recognition particle receptor protein, chloroplast (FTSY), similar to Cell division protein ftsY homolog (Aquifex aeolicus) 10


Folding, Sorting and Degradation | Protein export Pathway for nuclear-encoded, thylakoid-localized proteins | SRP (signal recognition particle)-dependent pathway for integral membrane proteins


0.58 1.15
At5g36700 0.545
similar to phosphoglycolate phosphatase (Chlamydomonas reinhardtii) -0.28 0.07 0.06 0.04 -0.14 -0.11 0.09 0.01 -0.06 -0.08 -0.21 -0.07 0.06 -0.11 0 -0.17 -0.2 -0.15 -0.14 -0.08 -0.11 -0.11 -0.01 -0.04 -0.08 -0.78 0.37 0.24 -0.78 0.37 0.24 0.18 0.05 -0.13 -0.34 -0.2 0.01 -0.65 0.43 -0.23 0.4 -0.24 0.36 -0.03 0.56 -0.15 0.32 -0.19 0.43 -0.06 0.51 -0.03 0.39 0.34 0.17 0.38 0.17 0.53 0.42 0.28 0.19 0.25 -0.38 0.13 0.23 0.21 -0.08 -0.41 -0.24 -0.09 -0.65 0.14 0.07 0.07 0.24 -0.14 0.28 -0.13 0.07 -0.34 0.07 -0.24 0.04 0.08 0.06 0.13 0.11 0.16 0 0.11 -1.43 0.35 0.37 0.38 -0.64 0.28 -0.01 0.21 0.25 0.2 -0.61 0.43 -0.67 -0.02 -0.56 At5g36700 249658_s_at (m)
similar to phosphoglycolate phosphatase (Chlamydomonas reinhardtii) 2

superpathway of serine and glycine biosynthesis II | cysteine biosynthesis II | glycine biosynthesis I | serine biosynthesis | photorespiration




1.07 2.00
At5g36790 0.545
similar to phosphoglycolate phosphatase (Chlamydomonas reinhardtii) -0.28 0.07 0.06 0.04 -0.14 -0.11 0.09 0.01 -0.06 -0.08 -0.21 -0.07 0.06 -0.11 0 -0.17 -0.2 -0.15 -0.14 -0.08 -0.11 -0.11 -0.01 -0.04 -0.08 -0.78 0.37 0.24 -0.78 0.37 0.24 0.18 0.05 -0.13 -0.34 -0.2 0.01 -0.65 0.43 -0.23 0.4 -0.24 0.36 -0.03 0.56 -0.15 0.32 -0.19 0.43 -0.06 0.51 -0.03 0.39 0.34 0.17 0.38 0.17 0.53 0.42 0.28 0.19 0.25 -0.38 0.13 0.23 0.21 -0.08 -0.41 -0.24 -0.09 -0.65 0.14 0.07 0.07 0.24 -0.14 0.28 -0.13 0.07 -0.34 0.07 -0.24 0.04 0.08 0.06 0.13 0.11 0.16 0 0.11 -1.43 0.35 0.37 0.38 -0.64 0.28 -0.01 0.21 0.25 0.2 -0.61 0.43 -0.67 -0.02 -0.56 At5g36790 249658_s_at (m)
similar to phosphoglycolate phosphatase (Chlamydomonas reinhardtii) 4
phosphate metabolism superpathway of serine and glycine biosynthesis II | cysteine biosynthesis II | glycine biosynthesis I | serine biosynthesis | photorespiration




1.07 2.00
At1g50450 0.542
expressed protein -0.08 0.05 0.03 -0.05 -0.12 0.02 0.09 0.16 -0.04 0.06 0.01 -0.18 -0.08 0.08 0.02 0.01 0.13 -0.24 -0.05 0.16 -0.31 -0.38 0.16 0.06 -0.03 0.1 -0.1 -0.13 0.1 -0.1 -0.13 0.39 0.15 0.11 0.04 -0.16 -0.05 -0.91 0.05 -0.25 -0.01 -0.33 0.14 0.13 0.31 -0.21 0.06 -0.02 -0.15 -0.08 0.15 -0.1 0.02 0 -0.12 0.09 -0.08 0.56 0.24 -0.09 -0.12 0.09 -0.47 -0.17 -0.54 -0.43 0.15 0.04 -0.04 0.2 -0.53 0.05 -0.19 0.1 0.11 0.07 0.39 0.02 -0.05 -0.25 0.02 -0.15 0.25 0 -0.07 0.12 0.03 0.03 -0.08 0.18 -0.66 0.35 0.52 0.24 -0.28 0.24 -0.24 -0.15 0.24 -0.08 -0.17 0.07 -0.17 0.34 1.89 At1g50450 261861_at
expressed protein 1

dTDP-rhamnose biosynthesis




0.77 2.80
At3g17040 0.540 HCF107 Required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. -0.12 0.12 0.15 0.06 -0.06 0.04 -0.01 0.17 0.28 0.04 0.39 0.19 0.14 -0.41 0.05 -0.1 -0.01 0.08 -0.04 0.12 0.16 -0.03 0.24 -0.06 0.09 -0.48 -0.05 -0.06 -0.48 -0.05 -0.06 0.09 -0.36 -0.16 0.01 -0.07 -0.07 -0.64 0.23 -0.28 0.06 -0.25 0.07 0.02 0.32 0.16 0.31 -0.09 0.19 0 0.22 0.21 -0.09 0.19 -0.28 0.28 0 0.25 0.16 0.12 0.34 0 -0.16 0.25 0.31 0.43 -0.07 -0.11 0.08 0.32 -1.35 0.12 -0.08 0.22 -0.35 0 0.19 -0.08 0.02 -0.25 -0.17 -0.01 0.12 0.17 0.07 -0.04 0.21 -0.04 0.13 -1.59 -2.41 0.6 0.48 0.44 -0.3 0.33 -0.03 0.26 0.39 0.69 -0.73 0.78 -0.33 0.14 0.08 At3g17040 257932_at HCF107 Required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. 4 RNA processing | plastid organization and biogenesis


mRNA processing in chloroplast


0.90 3.19
At1g56190 0.539
similar to Phosphoglycerate kinase, chloroplast precursor from Chlamydomonas reinhardtii 0.03 0.07 -0.02 -0.06 -0.09 -0.05 -0.05 -0.09 0.02 -0.03 -0.07 -0.17 -0.03 -0.26 -0.19 -0.16 -0.2 -0.25 -0.1 -0.03 -0.18 -0.19 -0.04 0.01 0.03 -0.05 -0.13 0.17 -0.05 -0.13 0.17 0.04 -0.31 -0.1 0.03 -0.13 -0.01 -0.39 0.34 -0.07 0.24 0.05 0.1 0.14 0.31 -0.12 -0.03 0.03 0.21 0.16 0.23 -0.05 0.56 0.4 -0.02 0.08 0.26 0.4 0.14 -0.02 0.27 0.31 -0.83 -0.17 -0.27 -0.26 -0.1 0.54 -0.07 -0.01 -0.74 -0.43 -0.1 -0.16 0.02 0.11 -0.11 -0.19 0.38 0.46 0.16 0.07 0 0.05 -0.04 0.17 0.15 0.11 0 -0.01 -0.21 -0.12 0.12 0.01 -0.16 0.11 -0.04 -0.13 0.27 -0.06 0 -0.14 -0.1 0.34 0.44 At1g56190 256228_at (m)
similar to Phosphoglycerate kinase, chloroplast precursor from Chlamydomonas reinhardtii 4
C-compound and carbohydrate metabolism | glycolysis and gluconeogenesis | photosynthesis gluconeogenesis | glycerol degradation II | Calvin cycle | sorbitol fermentation | fructose degradation (anaerobic) | acetate fermentation | glycolysis I | glyceraldehyde 3-phosphate degradation | glycolysis IV Glycolysis / Gluconeogenesis | Carbon fixation Intermediary Carbon Metabolism


0.66 1.39
At3g12780 0.539 PGK1 phosphoglycerate kinase, putative 0.03 0.07 -0.02 -0.06 -0.09 -0.05 -0.05 -0.09 0.02 -0.03 -0.07 -0.17 -0.03 -0.26 -0.19 -0.16 -0.2 -0.25 -0.1 -0.03 -0.18 -0.19 -0.04 0.01 0.03 -0.05 -0.13 0.17 -0.05 -0.13 0.17 0.04 -0.31 -0.1 0.03 -0.13 -0.01 -0.39 0.34 -0.07 0.24 0.05 0.1 0.14 0.31 -0.12 -0.03 0.03 0.21 0.16 0.23 -0.05 0.56 0.4 -0.02 0.08 0.26 0.4 0.14 -0.02 0.27 0.31 -0.83 -0.17 -0.27 -0.26 -0.1 0.54 -0.07 -0.01 -0.74 -0.43 -0.1 -0.16 0.02 0.11 -0.11 -0.19 0.38 0.46 0.16 0.07 0 0.05 -0.04 0.17 0.15 0.11 0 -0.01 -0.21 -0.12 0.12 0.01 -0.16 0.11 -0.04 -0.13 0.27 -0.06 0 -0.14 -0.1 0.34 0.44 At3g12780 256228_at (m) PGK1 phosphoglycerate kinase, putative 4
C-compound and carbohydrate metabolism | glycolysis and gluconeogenesis | photosynthesis gluconeogenesis | glycerol degradation II | Calvin cycle | sorbitol fermentation | fructose degradation (anaerobic) | acetate fermentation | glycolysis I | glyceraldehyde 3-phosphate degradation | glycolysis IV Glycolysis / Gluconeogenesis | Carbon fixation Intermediary Carbon Metabolism


0.66 1.39




























































































































page created by Alexandre OLRY 05/24/06