Co-Expression Analysis of: CYP97C1, LUT1 (At3g53130) Institut de Biologie Moléculaire des Plantes

































































































































































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Organ and Tissue Data Set view / save heatmap as: OpenOffice table annotation details for co-expressed genes can be found to the right of the heatmap
















































































































































































MS Excel table
















































































































































































save / view all data as: Tab delimited Table For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets.













































































































































































shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) magnitude of change [log2(sample / average)]  0   0.3   0.6   0.9  1.2   1.5   1.8   2.1   2.4   2.7   >2.99 










































































































































































greater than zero                                                         










































































































































































less than zero                                                         










































































































































































Locus r-value Name Description suspension cell, aphidicolin, 0h ( 5) suspension cell, aphidicolin, 2h (5) suspension cell, aphidicolin, 4h (5) suspension cell, aphidicolin, 6h (5) suspension cell, aphidicolin, 8h (5) suspension cell, aphidicolin, 10h (5) suspension cell, aphidicolin, 12h (5) suspension cell, aphidicolin, 14h (5) suspension cell, aphidicolin, 16h (5) suspension cell, aphidicolin, 19h (5) suspension cell, sucrose, 0h (6) suspension cell, sucrose, 2h (6) suspension cell, sucrose, 4h (6) suspension cell, sucrose, 6h (6) suspension cell, sucrose, 8h (6) suspension cell, sucrose, 10h (6) suspension cell, sucrose, 12h (6) suspension cell, 1d (19) suspension cell, 1d (19) suspension cell, 5d (19) suspension cell, 7d (19) suspension cell, senescing (20) protoplast (62) suspension cell, light (153) suspension cell, dark (153) callus, transdifferentiation A1 (78) callus, transdifferentiation A2 (78) callus, transdifferentiation A3 (78) callus, transdifferentiation A4 (78) callus, transdifferentiation A5 (78) callus, transdifferentiation A6 (78) seedling (59) seedling (137) seedling (138) seedling (143) seedling (144) seedling, cont. light, 26h (149) seedling, cont. light, 26h (149) seedling, cont. light, 34h (149) seedling, cont. light, 38h (149) seedling, cont. light, 42h (149) seedling, cont. light, 46h (149) seedling, cont. light, 50h (149) seedling, cont. light, 54h (149) seedling, cont. light, 58h (149) seedling, cont. light, 62h (149) seedling, cont. light, 66h (149) seedling, cont. light, 70h (149) seedling, cont. light, 74h (149) seedling, far red then white light (83) seedling, dark then white light (83) Cotyledon (87) Hypocotyl (87) Hypocotyl (139) leaf, dedifferentiation A01 (50) leaf, dedifferentiation A02 (50) leaf, dedifferentiation A81 (50) leaf, dedifferentiation A82 (50) leaf, dedifferentiation A301 (50) leaf, dedifferentiation A302 (50) leaf, dedifferentiation A481 (50) leaf, dedifferentiation A482 (50) leaf, dedifferentiation B01 (50) leaf, dedifferentiation B02 (50) leaf, whole rosette, 0h (56) leaf, whole rosette, 0h (56) leaf, whole rosette, 2h (56) leaf, whole rosette, 4h (56) leaf, whole rosette, 8h (56) leaf, whole rosette, 12h (56) leaf, whole rosette, 13h (56) leaf, whole rosette, 14h (56) leaf, whole rosette, 16h (56) leaf, whole rosette, 20h (56) leaf, whole rosette, 24h (56) leaf, whole rosette, 0h (56) leaf, whole rosette, 4h (56) leaf, whole rosette, 8h (56) leaf, whole rosette, 12h (56) leaf, whole rosette, 16h (56) leaf, whole rosette, 20h (56) leaf, mature, high light (68) leaf, mature, low light (68) leaf stage 7, petiol (88) leaf stage 7, proximal half (88) leaf stage 7, distal half (88) guard cell enriched (11) senescing leaf, Col5 (60) senescing leaf, Col0 (60) senescing leaf (88) cauline leaf (88) roots (87) whole roots, A. halleri (101) whole roots, A. petrea (101) roots (141) mature roots (23) lateral roots (24) lateral roots (29) roots, axillary buds, dormant (30) roots, axillary buds, active (30) Roots, N03 depleted, dex treated (64) Roots, N03 depleted (64) root elongation zone (79) stem (80) stem (88) stem, base (66) stem, tip (66) stem, 1st node (88) stem, base, injured with needle (8) shoot apex (87) shoot apex (87) shoot apex (88) apical region, vegetative, Col (94) apical region, reproductive, 3d, Col (94) apical region, reproductive, 5d, Col (94) apical region, reproductive, 7d, Col (94) apical region, vegetative, Ler (94) apical region, reproductive, 3d, Ler (94) apical region, reproductive, 5d, Ler (94) apical region, reproductive, 7d, Ler (94) flower, stage 9 (89) flower, stage 10 (89) flower, stage 12 (89) flower, stage 15 (89) flower-silique, stage I (84) flower-silique, stage II (84) flower-silique, stage III (84) flower bud, young (9) flower bud, old (9) flower (80) flower (92) flower (100) sepal, stage 12 (89) sepal, stage 15 (89) petal, stage 12 (89) petal, stage 15 (89) stamen, stage 12 (89) stamen, stage 15 (89) carpel, stage 12 (89) carpel, stage 15 (89) pedicel, stage 15 (89) pollen, uninucleate microspores (22) pollen, bicellular (22) pollen, tricellular (22) pollen, mature (22) pollen (74) silique, young (136) silique, old (136) silique, stage 3 (90) silique, stage 4 (90) silique, stage 5 (90) seed, stage 6 (90) seed, stage 7 (90) seed, stage 8 (90) seed, stage 9 (90) seed, stage 10 (90) seed, dry (116) seed, dry (117) seed, fresh (96) seed, dormant (96) seed, imbibed, 1h (117) seed, imbibed, 3h (117) seed, imbibed, 22°C (118) seed, imbibed, far red, 22°C (132) seed, imbibed, 4°C (118) seed, imbibed, far red, 4°C (132) seed, imbibed (116) Locus Probeset Name Description Annotation score GO.keywords FunCat keywords AraCyc annotations KEGG annotations BioPath annotations AcylLipid category Literature annotations Gene family 90% quantile of DE max. DE
At3g53130 1.000 LUT1, CYP97C1 cytochrome P450 family protein, Lutein-deficient 1 (LUT1) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Involved in epsilon ring hydroxylation. 0.04 -0.45 -0.37 -0.02 -0.13 0.31 0.07 0.35 0.26 0.21 0.23 0.51 0.15 -0.12 0.11 -0.28 0.19 0.09 0.3 0.28 0.4 0.08 0.85 0.56 0.19 -1.33 -1.39 -1.39 -1.39 -1.39 -1.28 0.31 -0.19 0.48 0.75 -0.16 -0.01 0.17 0.31 0.62 0.53 0.38 0.05 0.17 0.57 0.51 0.82 0.3 0.12 0.11 0.08 0.7 -0.41 -0.86 0.64 -0.22 -0.13 -0.22 0.3 0 -0.82 -0.94 -1.39 -1.47 1.18 1.08 1.03 1.03 0.95 0.99 0.81 0.75 1 0.86 1.1 0.68 1.28 1.36 1.42 1.41 1.41 1.9 1.76 0.49 0.79 0.59 0.35 0.76 0.13 -1.3 0.45 -1.76 -1.39 -1.39 -1.42 -1.39 -0.64 -1.39 0.32 1.02 -1.39 -1.39 -1.39 0.11 -0.23 0.01 1.05 -0.23 0.38 1.14 0.55 0.34 -0.38 -0.03 -0.08 -0.12 0.11 -0.05 0.22 0.28 0.68 0.9 0.62 0.3 0.54 0.46 0.97 0.47 0.71 0.26 0.61 0.78 0.8 -1.01 0.16 0.14 -1.51 -0.43 0.3 0.61 1.44 -0.3 -0.17 -1.39 -1.39 -1.39 0.67 -0.47 0.87 -0.18 -0.25 -0.93 -1.08 -0.75 -1.18 -0.99 -0.99 -0.89 -0.86 -0.38 -1.06 -1.57 -0.86 -0.86 -1.35 -1.48 -0.39 At3g53130 251969_at LUT1, CYP97C1 cytochrome P450 family protein, Lutein-deficient 1 (LUT1) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Involved in epsilon ring hydroxylation. 9 epsilon hydroxylase activity | carotenoid biosynthesis metabolism



Carotenoid and abscisic acid metabolism | carotenoid degradation cytochrome P450 family, carotenoid epsilon-ring hydroxylase, formation of lutein from ?-carotene 2.57 3.66
At3g48730 0.858
glutamate-1-semialdehyde 2,1-aminomutase 2 (GSA 2) -0.77 -0.51 -0.51 -0.28 -0.08 -0.1 -0.18 -0.41 -0.31 -0.15 -0.19 -0.77 -0.35 0.04 -0.15 0.24 -0.18 0.08 -0.17 -0.72 -0.51 -0.91 0.55 1.13 0.19 -1.92 -2.31 -2.52 -2.78 -2.54 -2.47 1.07 -0.57 0.46 1.55 0.77 0.67 0.86 1.15 1.06 1.11 1.13 1.14 1.06 1.31 1.21 1.1 0.96 0.65 0.49 0.68 1.19 -0.41 -0.49 1.06 0.05 0.59 0.55 -0.24 0.12 0.11 0.09 -1.75 -1.86 1.63 1.4 1.41 1.44 1.36 1.06 1.06 0.93 1.17 1.37 1.45 1.34 1.6 1.71 1.74 1.53 1.55 2.54 2.41 1.48 1.79 1.22 0.23 0.63 0.28 -1.13 -0.1 -2.02 -0.67 -0.8 -1.93 -2.45 -1.89 -2.19 0.11 0.94 -2.5 -2.42 -2.18 0.64 -0.71 -0.8 1.12 -0.67 -0.51 1.85 1.32 0.56 0.37 0.66 0.6 0.1 0.7 0.5 0.41 0.17 0.63 0.63 0.55 -0.06 0.38 0.54 1.42 0.37 0.53 0.7 0.68 0.82 0.56 -1.54 0.48 -1.39 -1.43 -1.78 0.33 0.88 1.61 -0.34 -0.64 -2.12 -2.39 -2.12 -0.2 -0.92 1.14 0.02 -0.17 -0.44 -1.19 -2.4 -2.76 -2.54 -1.98 -1.85 -0.37 0.45 -1.88 -1.8 0.17 0.17 -0.01 -0.33 0.9 At3g48730 252318_at
glutamate-1-semialdehyde 2,1-aminomutase 2 (GSA 2) 6 porphyrin biosynthesis secondary metabolism | biogenesis of chloroplast chlorophyll biosynthesis | biosynthesis of proto- and siroheme | biotin biosynthesis I | arginine degradation II | arginine degradation III | arginine degradation V | glutamate degradation I Porphyrin and chlorophyll metabolism Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Chlorophyll biosynthesis and breakdown
chlorophyll and phytochromobilin metabolism | chlorophyll and phyochromobilin biosynthesis
4.00 5.32
At2g30390 0.853
ferrochelatase II, Protoheme ferro-lyase -1.19 -1.65 -0.42 -0.31 -0.6 -0.6 -0.49 -0.67 -0.79 -0.53 -0.51 -0.12 0.06 0.02 -0.28 -0.17 -0.47 -0.46 -1.28 -0.76 -1.12 -1.47 -1.27 1.12 0.48 -1.65 -1.65 -1.65 -1.65 -1.65 -1.65 0.3 -0.01 0.91 1.11 -0.37 -0.03 0.22 0.55 0.96 0.69 0.65 0 0.62 0.73 0.78 0.84 0.48 -0.06 0.14 0.8 1.29 -0.12 -1.65 1.22 -0.03 0.82 0.22 -0.02 0.13 0.46 -0.05 -1.61 -1.22 1.99 1.83 1.85 1.54 1.49 0.94 1.17 1.53 1.69 1.66 2 0.92 1.6 1.84 2.35 2.1 1.83 1.92 1.9 0.75 1.54 1.48 0.43 1.33 0.95 0.48 1.34 -1.65 -0.8 -0.69 -1.65 -1.65 -1.65 -1.65 -0.14 0.46 -1.65 -1.65 -1.65 0.31 0.06 -0.05 0.98 -0.23 0.68 0.83 0.38 0.39 0.2 0.02 0.02 0.19 0.14 0.02 0.18 0.13 0.42 0.62 0.66 0.55 0.37 0.54 0.6 0.35 0.66 0.28 0.51 0.87 1.23 0.52 0.35 0.06 -0.89 -0.12 0.61 0.56 1.54 -0.56 -0.19 -1.65 -1.65 -1.65 0.99 0.04 0.96 0.5 0.17 -1.01 -1.4 -1.71 -1.65 -1.65 -1.63 -1.39 -1.65 -0.89 -1.78 -2.13 -0.88 -0.88 -1.73 -1.65 -0.91 At2g30390 267471_at
ferrochelatase II, Protoheme ferro-lyase 10

biosynthesis of proto- and siroheme Porphyrin and chlorophyll metabolism Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Chlorophyll biosynthesis and breakdown
chlorophyll and phytochromobilin metabolism | phytochromobilin biosynthesis
3.48 4.49
At1g32990 0.819 PRPL11 mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11 -0.94 -1.95 -1.08 -0.78 -0.72 -0.68 -0.72 -0.67 -0.63 -0.79 -0.77 -1.34 -1.1 -0.69 -0.49 -0.48 -0.51 -0.56 -0.31 -0.77 -0.68 -2.27 -1.67 1.49 1.13 -2.04 -1.82 -2.21 -2.06 -2.06 -2.16 1.18 0.12 0.83 1.89 0.93 1.06 1.28 1.51 1.46 1.42 1.34 1.45 1.37 1.7 1.53 1.63 1.65 1.18 1.44 1.4 1.65 -0.36 0.14 1.42 0.83 0.38 0.55 0.39 0.79 -0.81 -0.33 -2.46 -2.06 1.65 1.4 1.46 1.66 1.46 1.45 1.42 1.36 1.6 1.53 1.42 1.7 1.98 2.02 1.99 1.95 1.93 2.12 2 1.8 2.08 1.8 -0.04 0.96 0.52 -1.15 0.49 -1.98 -1.22 -0.24 -2.48 -2.54 -1.68 -3.15 0.36 1.18 -3.06 -2.48 -2.88 1.1 -0.13 -0.57 1.46 0.01 -0.44 2.06 1.45 0.65 0.18 0.54 0.36 -0.21 0.51 0.18 0 0.05 0.91 0.86 0.78 0.23 0.55 0.59 1.52 0.51 0.56 0.87 0.86 0.15 1.02 -1.44 0.56 -1.18 -1.52 -1.78 0.53 1.08 1.88 -1.45 -1.61 -3.8 -3.46 -3.12 -0.24 -1.57 1.52 0.16 -0.12 -0.37 -0.99 -1.85 -2.31 -2.5 -1.56 -1.76 -0.89 0.47 -1.59 -1.64 -0.32 -0.32 -0.51 -0.38 0.92 At1g32990 261190_at PRPL11 mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11 6


Ribosome



4.40 5.92
At2g24060 0.818
translation initiation factor 3 (IF-3) family protein -1.14 -1.72 -0.4 -0.51 -0.69 -1.04 -0.6 -0.86 -0.76 -1.04 -0.41 -1.24 -0.68 -0.56 -0.35 -0.53 -0.86 -0.28 -0.03 -0.28 -0.42 -0.97 -1.14 0.55 0.5 -1.45 -1.29 -1.29 -1.84 -1.48 -1.35 0.56 -0.51 0.57 0.89 0.27 -0.13 -0.12 0.61 0.39 0.6 0.55 0.18 0.13 0.52 0.66 0.47 0.27 -0.38 0.37 0.1 1.07 -0.49 0.13 1.1 0.04 0 -0.34 -0.44 -0.28 -1.1 -0.97 -1.72 -1.52 1.35 1.55 1.18 1.21 1.45 1.52 0.9 0.79 0.96 1.19 1.37 1.33 1.53 1.85 1.93 1.6 1.79 1.65 1.54 1.37 1.66 1.33 0.87 1.1 0.57 -1.51 0.19 -1.76 -1.04 -1.72 -1.71 -1.84 -0.81 -1.72 0.68 2 -2.5 -2.23 -1.72 0.51 -0.35 -0.46 1.14 -0.63 -0.88 1.59 1.02 0.39 1.11 1.21 0.68 1.08 1.29 1.23 0.81 0.75 0.62 0.7 0.28 -0.18 0.31 0.33 1.07 0.69 0.72 0.86 0.62 1.33 0.68 -1.61 0.09 -1.49 -1.67 -1.46 0.31 0.73 1.37 0.33 0.01 -1.72 -1.72 -1.72 0.97 -0.48 1.35 -0.11 -0.17 -0.24 -0.76 -0.77 -1.03 -0.87 -0.62 -0.7 -0.54 0.49 -0.52 -0.62 -0.4 -0.4 -0.33 -0.17 0.75 At2g24060 266575_at
translation initiation factor 3 (IF-3) family protein 2


Translation factors



3.27 4.52
At4g34240 0.818 ALDH3I1 Aldedhyde dehydrogenase induced by ABA and dehydration -0.75 -0.82 -0.12 -0.42 -0.5 -0.27 -0.24 -0.38 -0.21 -0.79 0.17 0.45 0.2 0.34 0.32 -0.22 -0.48 0.01 -0.52 -0.62 -0.83 -0.17 1.4 1.54 0.92 -1.35 -1.94 -1.94 -1.1 -1.01 -1.32 0.8 -0.49 1.12 0.49 -0.52 0.45 0.37 0.07 0.53 0.65 0.77 0.55 0.06 0.07 0.68 0.71 0.33 0.19 0.77 0.3 0.74 0.08 -0.32 0.51 0.36 0.32 1.11 1.48 -0.02 -0.28 -0.07 -0.78 -1.12 0.76 0.91 0.63 0.62 0.38 0.31 1.03 1.43 1.45 0.67 0.7 0.54 1.59 1.01 1.15 0.87 0.83 1.64 1.72 0.6 0.98 0.94 -0.1 0.05 0.21 0.24 1.13 -1.38 -0.85 -0.77 -1.76 -1.94 -1.94 -1.94 -0.33 0.16 -1.78 -1.75 -1.94 -0.3 -0.21 -0.09 0.57 0.05 1.26 0.86 0.44 0.26 0.28 0.5 0.11 0.34 0.73 0.57 0.51 0.6 1.2 1.22 0.54 0.68 1.05 1.11 1.04 0.97 0.62 0.13 0.91 0.98 1.42 1.49 0.19 1.04 -1.13 0.11 0.32 0.69 0.81 0.31 0.23 -1.94 -1.94 -1.94 0.73 0.92 0.62 0.59 0.43 -1.33 -1.57 -1.94 -1.94 -1.94 -1.94 -2.13 -1.94 -0.51 -2.22 -1.94 -0.92 -0.92 -1.77 -1.94 -0.28 At4g34240 253237_at ALDH3I1 Aldedhyde dehydrogenase induced by ABA and dehydration 2 response to water deprivation | response to abscisic acid stimulus glycolysis and gluconeogenesis

Intermediary Carbon Metabolism

Aldehyde dehydrogenase, Family 3: class-3 ALDHs 3.35 3.94
At4g01310 0.816
ribosomal protein L5 family protein -0.26 -1.34 -0.56 0.04 0.23 0.21 -0.11 0.06 -0.14 0.06 0.5 -1.17 -0.63 -0.02 0.26 0.28 0.55 0.44 0.28 -0.11 -0.71 -2 -1.21 1.88 1.48 -1.57 -1.55 -2.2 -2.11 -2.09 -1.92 1.4 -0.21 1.56 1.5 1.05 0.56 0.82 0.94 0.96 0.84 0.92 0.97 1.04 1.11 0.92 0.83 0.99 0.84 0.88 0.82 1.26 -0.14 0.24 1.13 0.71 0.01 0.15 0.3 0.53 -1.56 -0.61 -2.98 -2.04 1.24 1.26 1.21 1.38 1.44 1.24 1.2 1.1 1.23 1.1 1.01 1.51 1.69 1.66 1.77 1.66 1.91 2.04 2 1.58 1.78 1.35 0.34 0.5 0.21 -1.35 0.03 -1.95 0.07 -0.08 -2.31 -2.79 -1.86 -2.86 -0.22 1.04 -2.62 -2.56 -2.73 0.33 -0.68 -1.04 0.99 -0.31 -0.8 1.87 1.33 0.66 0.57 0.9 0.67 0.44 0.89 0.69 0.47 0.42 0.74 0.87 0.59 0.13 0.19 0.36 1.24 0.5 0.44 0.31 0.78 0.14 0.56 -2.04 0.62 -1.55 -1.73 -2.16 0.6 0.98 1.94 -1.6 -1.87 -3.62 -3.62 -3.62 -0.4 -1.41 1.39 0.1 0.12 -0.25 -0.51 -1.49 -1.87 -1.95 -1.06 -1.3 -0.41 0.17 -1.14 -2.12 0.07 0.07 -0.46 -0.28 0.65 At4g01310 255623_at
ribosomal protein L5 family protein 2
protein synthesis | ribosome biogenesis
Ribosome



4.17 5.66
At5g63310 0.816 NDPK2 nucleotide diphosphate kinase II, Maintains intracellular dNTP levels except ATP, also plays a role in oxidative stress response. -0.83 -1.37 -0.73 -0.23 -0.28 -0.44 -0.11 -0.28 -0.35 -0.02 -0.76 -1.25 -0.48 -0.05 -0.19 -0.08 0 0.8 -0.26 0.02 -0.97 -2.31 -1.34 1.3 -0.02 -2.06 -2.09 -2.29 -2.52 -2.43 -2.36 0.86 -0.44 0.43 1.65 1.31 1.17 0.98 1.48 1.08 1.32 1.26 1.59 1.19 1.45 1.62 1.37 1.47 1.06 0.76 0.82 1.67 0.72 0.07 0.89 0.01 0.28 0.27 0.18 -0.02 -1.41 -0.24 -2.15 -1.57 1.35 1.33 1.08 1.31 1.32 1.19 1.02 0.81 1.31 1.12 0.97 1.67 1.93 2.02 1.82 1.92 1.97 2.19 2.04 1.72 1.86 1.49 0.34 0.43 -0.21 -1.94 -0.38 -0.69 -1.33 -1.8 -1.78 -2.02 -1.73 -2.23 -0.33 1.02 -1.79 -1.94 -2.15 0.39 -0.42 -1.89 1.23 -0.07 -0.95 1.87 1.54 1.03 0.89 1.08 1.12 0.56 1.05 0.82 0.76 0.66 1.02 1.03 0.61 0.14 0.43 0.49 1.11 0.49 0.56 0.59 0.93 1.01 0.79 -1.68 0.41 -0.98 -0.82 -1.49 0.45 0.79 1.71 -0.97 -0.72 -2.29 -2.29 -2.29 -0.06 -1.4 1.64 0.3 -0.03 -0.67 -1.24 -2.74 -3.39 -3.1 -2.27 -2.39 -0.86 0.78 -2.16 -2.41 -0.17 -0.17 -0.85 -0.65 1.08 At5g63310 247376_at NDPK2 nucleotide diphosphate kinase II, Maintains intracellular dNTP levels except ATP, also plays a role in oxidative stress response. 4 response to hydrogen peroxide | nucleoside diphosphate kinase activity regulation of nucleotide metabolism de novo biosynthesis of purine nucleotides I | de novo biosynthesis of pyrimidine ribonucleotides Nucleotide Metabolism | Purine metabolism | Pyrimidine metabolism



4.10 5.58
At2g44650 0.814 CHL-CPN10 Encodes a chloroplast-localized chaperonin 10 whose mRNA is expressed in leaves and stems but not roots. 0.33 0.05 0.38 0.36 0.53 0.5 0.56 0.28 0.41 0.62 0.54 0.39 -0.11 0.2 0.49 0.37 0.57 0.73 0.11 0.09 -0.69 -0.63 0.31 1.09 0.83 -1.94 -2.15 -2.62 -2.52 -2.67 -2.42 0.9 -0.27 0.81 1.15 0.26 0.38 0.51 0.85 0.71 0.61 0.69 0.83 0.56 0.77 0.77 0.63 0.82 0.6 0.54 0.42 0.77 0.09 0.6 0.1 -0.46 -0.19 -0.28 -0.46 -0.44 -1.25 -0.63 -1.79 -1.55 1.06 0.86 0.87 0.91 0.85 0.82 0.65 0.62 0.83 0.83 0.73 1.11 1.53 1.61 1.67 1.5 1.36 1.58 1.46 0.79 0.94 0.64 0.37 0.31 0.16 -0.84 -0.04 -0.81 -1.95 -1.58 -0.96 -1.15 -1.55 -1.73 0.16 0.61 -0.84 -0.86 -1.47 -0.33 -0.48 -1.11 0.63 -0.04 -0.65 1.51 1.18 0.66 -0.02 0.12 0.15 -0.12 0.05 0.02 -0.03 -0.31 0.59 0.75 0.47 0.21 -0.2 -0.1 0.78 0.3 0.39 0.03 0.66 0.25 0.54 -0.7 0.21 -0.44 -0.79 -0.83 0.38 0.78 1.48 0.38 0.25 -1.52 -1.75 -4.76 -0.15 -0.63 1.25 0.26 0.18 -0.14 -0.68 -1.95 -1.34 -1.49 -1.51 -1.83 -0.63 0.76 -1.47 -1.36 -0.63 -0.63 0.35 0.63 0.25 At2g44650 266887_at CHL-CPN10 Encodes a chloroplast-localized chaperonin 10 whose mRNA is expressed in leaves and stems but not roots. 6 protein folding


Protein folding / chaperonins (chloroplast)


3.23 6.43
At1g36390 0.811
similar to co-chaperone CGE1 precursor isoform b (Chlamydomonas reinhardtii) -0.42 -1.12 -0.35 -0.37 -0.4 -0.17 -0.06 -0.18 -0.3 -0.31 -0.73 -0.14 -0.21 0.51 0.34 0.05 0.22 0.13 -0.09 -0.45 -0.84 -1.21 -0.45 0.66 -0.02 -1.07 -0.32 -0.9 -0.63 -0.77 -0.64 0.37 -0.35 0.13 0.8 0.41 0.23 0.1 0.6 0.28 0.56 0.52 0.4 0.18 0.55 0.7 0.61 0.65 0.11 0.49 0.23 0.53 -0.14 -0.4 0.27 -0.35 0.41 0.06 -0.34 -0.36 -0.69 -0.16 -0.38 -1.15 1.02 0.91 0.53 0.53 0.43 0.39 0.14 0.51 0.87 1.07 0.96 0.95 1.42 1.75 1.78 1.53 1.2 1.41 1.08 0.72 0.97 0.57 0.42 0.55 0.37 -0.56 -0.05 -0.8 -1.22 -0.34 -0.6 -0.91 -1.18 -1.15 0.09 0.28 -1.3 -1.25 -1.02 0.46 -0.63 -0.7 0.79 -0.71 -0.55 1.62 1.05 0.5 0.38 0.3 0.11 -0.07 0.27 0.11 0.07 0.17 0.61 0.52 0.32 -0.17 0.2 0.24 0.94 0.48 0.39 0.84 0.53 1.24 0.37 -0.45 0.37 -0.28 -0.85 -0.96 0.09 0.27 1.12 0.32 0.38 -1.26 -1.42 -1.22 0.72 0.51 1.18 0.01 -0.22 -0.59 -1.09 -1.05 -1.35 -1.12 -2.25 -1.99 -0.69 0.64 -2.13 -0.64 -0.8 -0.8 -0.6 -0.61 0.42 At1g36390 260125_at
similar to co-chaperone CGE1 precursor isoform b (Chlamydomonas reinhardtii) 4



Protein folding / chaperonins (chloroplast)


2.38 4.04
At5g16710 0.808
Strong similarity to dehydroascorbate reductase (Spinacia oleracea) -0.06 0.25 -0.1 0.38 0.4 0.32 0.13 0.24 0.16 0.39 0.33 -0.05 -0.03 -0.02 0.06 -0.27 -0.01 -0.09 -0.13 0.21 0.32 -2.14 -0.64 0.96 0.76 -1.89 -1.57 -1.58 -1.9 -1.62 -1.66 0.42 0.11 0.33 0.85 0.32 0.76 0.7 0.8 0.53 0.73 0.77 1.04 0.77 0.44 0.66 0.79 1.22 0.83 0.09 0.26 1.41 -0.15 0.6 0.97 0.54 0.06 0.15 0.4 0.44 -0.24 0.13 -1.52 -2.04 1.02 0.91 0.89 0.96 0.95 0.94 0.9 0.88 0.93 1.06 0.93 0.89 1.21 1.22 1.25 1.21 1.28 1.47 1.47 1.11 1.56 1.44 0.64 1.26 1.06 -0.22 0.53 -1.38 -0.32 0.6 -1.04 -1.44 -0.33 -1.91 0.1 1.04 -1.43 -1.44 -1.78 0.86 -0.13 0.56 0.79 0.08 0.26 0.87 0.17 -0.54 -0.15 -0.03 -0.22 -0.39 0.04 -0.08 -0.35 -0.44 -0.1 0.2 0 -0.13 -0.24 -0.11 0.56 0.13 0.17 0.13 -0.14 0.01 0.84 0.02 -0.11 -0.56 -1.82 -0.71 -0.6 0.05 0.95 -0.72 -1.03 -2.41 -2.59 -3.27 0.12 -0.13 0.62 0.06 -0.01 -0.25 -0.56 -0.98 -0.92 -0.97 -0.62 -0.77 -0.72 -0.49 -0.61 -1.09 -0.6 -0.6 -1.83 -1.72 -0.45 At5g16710 246454_at
Strong similarity to dehydroascorbate reductase (Spinacia oleracea) 2

ascorbate glutathione cycle Valine, leucine and isoleucine biosynthesis | Aminoacyl-tRNA biosynthesis


Glutathione S-transferase, Dehydroascorbate reductase family 3.05 4.83
At3g51820 0.807
chlorophyll synthetase, putative -1.89 -2.21 -1 -0.63 -0.76 -0.68 -0.8 -0.88 -0.75 -0.95 0.54 0 -0.09 -0.01 -0.14 -0.25 -0.41 -1 -1.08 -0.85 -1.17 -1.49 -0.13 1.92 1.5 -2.92 -3.34 -3.12 -3.28 -3.26 -3.33 1.55 0.22 1.58 1.02 0.45 1.01 0.92 1.08 1.22 1.29 1.41 1.21 0.87 0.99 1.21 1.29 1.47 0.89 0.86 0.77 1.47 0.04 -0.28 1.63 0.38 0.15 0.01 -0.02 0.48 -0.11 -0.55 -2.29 -1.47 1.45 1.3 1.23 1.28 1.56 1.66 1.77 1.73 1.7 1.36 1.31 2.18 2.34 2.29 2.33 2.1 2.45 2.46 2.48 1.19 1.61 1.42 1.05 0.94 0.86 0.01 1.01 -3.84 0.35 -1.39 -2.8 -3.22 -0.5 -1.85 0.62 1.26 -2.14 -2.17 -1.81 -0.26 -0.3 -0.26 1.09 -0.12 0.43 1.42 0.81 0.28 0.8 0.91 0.46 0.46 1.03 0.89 0.41 0.56 0.46 0.68 0.45 0.14 0.38 0.46 0.92 0.69 0.5 -0.18 0.44 0.69 1.09 0.02 0.37 -0.65 -1.27 -0.67 0.17 0.56 1.64 -1.51 -1.27 -0.4 -0.18 0.56 0.56 0.01 1.08 0.5 0.38 0.2 -0.15 -2.23 -2.43 -3.38 -2.98 -3.04 -1.66 -1.2 -3.39 -3.67 -0.51 -0.51 -1.72 -1.8 -0.64 At3g51820 246308_at
chlorophyll synthetase, putative 10
biosynthesis of vitamins, cofactors, and prosthetic groups | photosynthesis | biogenesis of chloroplast chlorophyll biosynthesis Porphyrin and chlorophyll metabolism Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Chlorophyll biosynthesis and breakdown
chlorophyll and phytochromobilin metabolism | chlorophyll a biosynthesis
5.07 6.32
At1g48520 0.806 GATB Encodes Glu-tRNA(Gln) amidotransferase subunit B 0.47 0.01 -0.28 -1.04 0.24 0.45 0 0.24 0.32 0.34 -1.04 -0.07 -0.18 -0.31 0.2 -0.26 0.01 0.15 0.07 -0.38 -0.59 -0.89 -0.35 0.84 0.65 -0.37 -0.69 -1.04 -0.62 -1.04 -0.53 0.87 -0.12 0.33 0.65 0.28 0.61 0.71 0.77 0.72 0.52 0.65 0.48 0.79 0.67 0.27 0.64 0.76 0.48 0.62 0.23 0.74 -0.19 -0.47 0.47 0.05 -0.3 -0.12 0.01 0.07 -0.79 -0.45 -1.15 -0.87 0.86 0.84 0.82 0.66 0.77 0.8 0.75 0.55 0.81 0.78 0.62 0.89 1.23 1.26 1.24 1.29 1.37 1.09 0.89 1 1.07 0.76 -0.18 0.38 0.18 -0.71 -0.21 -0.77 0.03 -1.04 -0.78 -0.67 -1.04 -0.69 0.5 0.97 -1.2 -0.92 -0.75 0.23 -0.75 -0.59 0.8 -0.21 -0.16 1.2 0.66 0.34 0 0.22 -0.01 -0.02 0.2 0.14 0.03 0.12 0.23 0.31 0.04 -0.35 -0.2 -0.11 0.49 0.38 0.35 0.47 0.3 0.57 0.14 -1.05 -0.07 -1 -1.4 -1.39 0.05 0.06 0.8 -0.04 -0.63 -1.04 -1.04 -1.04 -0.56 -0.56 0.52 -0.37 -0.51 -1.14 -1.37 -1.21 -1.04 -1.04 -1 -1.31 -0.56 1.01 -1.64 -1.48 -0.04 -0.04 -0.46 -0.64 0.68 At1g48520 261307_at GATB Encodes Glu-tRNA(Gln) amidotransferase subunit B 6


Other translation factors



2.17 3.01
At3g24430 0.803 HCF101 encodes a MRP-like protein with a nucleotide-binding domain. -0.4 1.58 -0.2 -0.2 0.08 -0.13 -0.42 -0.14 -0.05 -0.19 1.94 1.7 1.26 1.01 1.18 0.74 0.51 0.24 -0.63 0.82 0.78 1.91 1.57 0.86 0.56 -2.27 -3.35 -2.49 -2.4 -3.35 -2.25 0.51 -0.15 0.68 1.15 0.11 0.28 0.52 0.63 0.55 0.71 0.76 0.57 0.48 0.42 0.64 0.97 0.85 0.35 0.06 0.22 1.2 -0.76 -0.84 1.57 0.18 1.07 0.63 -0.53 0.28 -0.52 -0.54 0.57 0.07 1.34 1.36 1.19 1.3 1.38 1.4 1.32 1.49 1.51 1.45 1.47 1.42 1.81 1.88 1.7 1.79 1.85 1.94 1.95 0.8 1.4 1.32 0.19 0.79 0.59 -0.42 0.94 -2.68 -0.98 -1.1 -3.14 -3.35 -1.93 -3.17 0.16 0.72 -2.94 -2.38 -2.93 0.76 -0.25 -0.06 0.9 -0.15 -0.28 0.76 0.17 -0.42 -0.31 -0.17 -0.31 -0.41 0.26 -0.16 -0.15 0.11 0.23 0.59 0.09 -0.28 0.3 0.26 1.07 0.32 0.38 0.24 0.09 0.49 0.94 -0.28 -0.7 -1.45 -1.91 -1.88 -0.36 0.23 1.31 -1.47 -1.9 -3.35 -3.35 -3.35 0.86 0.1 0.89 0 -0.12 -1.02 -1.46 -2.1 -1.8 -2.06 0.2 0.39 -0.53 -0.03 0.19 -0.26 -0.51 -0.51 -0.52 -0.73 0.04 At3g24430 257168_at HCF101 encodes a MRP-like protein with a nucleotide-binding domain. 10



Thylakoid biogenesis and photosystem assembly


4.64 5.30
At3g17040 0.802 HCF107 Required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. 0.13 -1.02 0.02 0.4 0.4 0.53 0.3 0.26 0.44 0.53 1.81 0.54 1.18 1.21 1.2 0.83 0.68 0.92 1.34 1.68 2.58 0.06 0.83 0.96 1.34 -2.39 -2.39 -2.39 -2.39 -2.39 -2.39 1.41 -0.09 1.43 1.12 0.03 1.05 0.77 0.56 0.21 0.75 1.04 1.22 1.03 0.4 0.43 0.87 0.88 1.05 0.75 0.96 0.94 0.41 -0.39 2.02 1.19 -0.91 -0.51 0.19 0.8 -1.5 -1.05 -2.62 -1.1 0.01 0.09 -0.96 -0.15 1.09 1.71 1.45 1.73 1.7 0.78 0.17 1.46 1.92 1.07 0.42 0.68 1.61 1.73 1.92 0.46 0.54 0.72 1.38 0.03 0.7 -1.23 0.91 -2.39 -1.48 -2.39 -2.39 -2.39 -0.05 -1.47 1.1 1.54 -2.18 -1.47 -1.48 0.11 0.77 0.9 0.73 0.3 0.96 0.68 0.55 0.47 0.91 0.98 0.75 0.88 0.86 0.74 0.51 0.62 0.24 0.57 0.3 0.05 0.76 0.68 0.98 1.17 1.04 -0.02 0.47 1.11 0.2 -0.86 0.54 -0.3 -1.59 -0.65 0 0.11 0.98 -2.39 -2.39 -2.39 -2.39 -2.39 0.74 -0.6 1.18 0.09 0.08 0.44 -0.21 -1.92 -2.39 -2.39 -2.39 -2.39 -2.39 -2.39 -2.39 -2.39 -2 -2 -2.39 -2.39 -2.37 At3g17040 257932_at HCF107 Required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. 4 RNA processing | plastid organization and biogenesis


mRNA processing in chloroplast


4.09 5.20
At1g35680 0.794 RPL21 50S ribosomal protein L21, chloroplast / CL21 (RPL21) -1.08 -2.02 -1.26 -0.64 -0.39 -0.75 -0.81 -0.71 -0.72 -0.38 -0.07 -1.44 -1.63 -1.1 -0.49 -0.6 -0.66 -0.19 -0.97 -0.89 -2.11 -2.02 -1.33 1.18 1.06 -2.34 -2.08 -1.94 -2.04 -2 -1.77 1.13 -0.4 1.2 1.47 0.71 0.78 1 1.22 1.12 0.99 1.03 0.99 1.13 1.19 1.17 1.12 1.13 1.02 1.2 1.15 1.35 -0.01 0.06 1.49 0.62 0.26 0.46 0.27 0.72 -1.05 -0.28 -2.78 -2.11 1.24 1.29 1.14 1.24 1.26 1.39 1.07 1.1 1.29 1.07 1.06 2.02 2.02 2.08 2.23 2.17 2.19 1.77 1.88 1.79 1.87 1.62 0.69 1.07 0.89 -1.54 0.09 -1.88 -1.03 -0.3 -1.94 -2.6 -1.65 -2.8 0.68 1.5 -2.46 -2.31 -2.72 1.13 -0.61 -0.78 1.12 0.26 -0.34 1.81 1.37 0.74 0.81 1.04 0.56 0.67 0.57 0.34 0.26 0.08 1.06 1.1 0.8 0.27 0.49 0.33 1.29 0.68 0.43 0.97 0.92 0.54 0.84 -1.75 0.6 -1.73 -1.9 -2.1 0.69 1.05 1.94 -1.37 -1.61 -2.14 -2.14 -2.14 -0.22 -0.95 1.57 0.65 0.77 0.42 -0.1 -1.66 -2.27 -2.36 -1.77 -2.2 -0.39 0.28 -1.62 -2.34 0.31 0.31 -0.62 -0.44 0.84 At1g35680 262029_at RPL21 50S ribosomal protein L21, chloroplast / CL21 (RPL21) 6


Ribosome



4.16 5.04
At5g13510 0.794
ribosomal protein L10 family protein -1.94 -2.66 -1.06 -0.95 -1.08 -1.06 -1.1 -0.8 -0.9 -0.95 -0.63 -0.84 -0.85 -0.52 -0.54 -0.57 -0.54 -0.96 -1.11 -1.67 -2.02 -2.25 -1.1 1.59 1.13 -2.09 -1.96 -2.45 -2.56 -2.52 -2.29 1.14 -0.32 1.11 1.69 0.99 0.95 1.08 1.13 1.21 1.09 1.2 1.28 1.17 1.22 1.19 1.37 1.49 0.82 1.45 1.56 1.6 -0.32 0.14 1.82 0.71 0.71 0.63 0.33 0.74 -0.31 0.09 -1.18 -1.42 1.53 1.22 1.34 1.36 1.5 1.42 1.44 1.46 1.58 1.49 1.42 1.64 1.89 1.96 1.98 1.94 1.86 2.2 2.15 1.32 1.83 1.54 0.98 1.4 1.26 -1.3 0.32 -1.98 -0.7 -1.35 -2.43 -1.97 -0.98 -1.98 0.01 1.33 -2.48 -2.38 -1.8 0.91 -0.57 -0.48 1.27 -0.45 -0.52 1.66 1.06 0.22 0.11 0.38 0.21 -0.21 0.45 0.18 0.07 -0.01 0.34 0.52 0.44 -0.04 0.51 0.71 1.55 0.49 0.63 0.55 0.22 0.85 0.89 -0.41 0.16 -0.67 -1.59 -0.71 -0.08 0.56 1.51 -1.08 -1.17 -2.04 -2.04 -2.04 0.71 -0.13 1.3 0.64 0.56 0.21 -0.41 -1.58 -2.04 -2.04 -2.36 -2.21 -1.14 0 -2.09 -1.5 -0.51 -0.51 -0.66 -0.42 0.71 At5g13510 245852_at (m)
ribosomal protein L10 family protein 2
protein synthesis | ribosome biogenesis
Ribosome



4.07 4.86
At5g14660 0.792 PDF1B encodes a peptide deformylase-like protein 0.23 -2 -0.63 0.32 0.26 0 0.25 0.28 0.4 0.11 0.12 0.13 0.02 0.35 0.46 0.15 0.53 0.44 0.23 0.25 -0.03 -2 -0.12 1.15 0.63 -2 -2 -2 -2 -2 -2 0.67 -0.34 0.66 0.6 0.51 0.36 0.34 0.35 0.71 0.46 0.73 0.67 0.42 0.62 0.61 0.61 0.9 0.27 0.46 0.62 1.21 -0.28 -2 1.35 0.11 0.65 0.77 -0.4 0.28 -0.71 -0.66 -2 -1.32 1.17 0.95 0.85 0.92 1.03 0.83 0.95 0.99 1.31 1.17 1.3 0.85 1.66 1.57 1.59 1.27 1.34 1.84 1.53 1.26 1.53 1.22 0.17 0.87 0.78 -0.22 0.68 -1.58 -2 -2 -2 -2 -2 -2 -0.15 0.85 -2 -2 -2 0.1 -0.54 -2 0.53 -0.41 -0.19 1.7 1.06 0.22 0.31 0.62 0.31 0.14 0.73 0.56 0.49 0.35 0.46 0.68 0.37 0.09 0.24 0.71 1.06 -0.39 -0.07 0.25 0.27 0.5 1.08 -0.28 -0.19 -0.84 -0.69 -1.15 0.14 0.88 1.55 -2 -2 -2 -2 -2 -0.08 -0.28 1.18 0.22 0.08 -0.8 -1.23 -2 -1.93 -1.47 -0.82 -0.75 -0.23 0.1 -0.87 -0.18 -0.55 -0.55 1.33 1.58 1.29 At5g14660 250146_at PDF1B encodes a peptide deformylase-like protein 10
protein modification

Translation (chloroplast)


3.47 3.83
At5g23120 0.791 HCF136 encodes a stability and/or assembly factor of photosystem II -1.18 -1.6 -1.58 -1.15 -1.5 -1.71 -2.68 -1.45 -1.52 -1.22 -0.93 -1.58 -1.12 -0.93 -1.48 -1.09 -1.05 -1.37 -1.43 -1.13 -1.38 -1.57 -0.03 2.38 2.5 -2.21 -2.04 -2.52 -2.27 -1.84 -1.71 2.09 0.66 2.02 1.94 0.71 1.03 1.03 1.17 1.42 1.45 1.29 1.2 1.12 1.32 1.6 1.5 1.29 0.84 1.97 1.91 2.17 0.05 0.69 1.86 1.18 -0.16 -0.22 0.84 1.21 -0.87 -1.09 -2.98 -2.56 2 2 1.96 2.13 2.24 2.24 2.16 2.1 2.17 1.98 2.04 2.27 2.27 2.23 2.27 2.25 2.52 2.59 2.63 1.7 2.2 2.18 1.02 0.8 0.76 -0.3 1.57 -3.17 -0.07 0.23 -2.34 -3.09 -1.39 -2.45 0.18 0.67 -2.06 -2.16 -2.24 0.95 1.11 0.35 0.93 0.98 0.19 1.08 0.09 -0.37 -0.6 -0.33 -0.5 -0.57 0.06 -0.16 -0.31 -0.22 0.44 1.01 0.88 0.64 0.62 0.36 0.85 0.75 0.77 -0.05 0.54 0.17 1.9 0.94 0.12 0.59 -1.71 -0.07 -0.06 0.37 2.04 -1.8 -2.29 -2.65 -2.65 -2.68 1.27 0.41 1.13 0.82 0.59 -1.36 -1.71 -2.27 -2.54 -3.04 -2.09 -2.11 -1.56 -0.54 -2.02 -2.83 -1.18 -1.18 -1.69 -1.85 -1.31 At5g23120 249875_at HCF136 encodes a stability and/or assembly factor of photosystem II 10 protein binding | plastid organization and biogenesis | protein complex assembly


Thylakoid biogenesis and photosystem assembly


4.87 5.81
At2g35370 0.790 GDCH glycine cleavage system H protein 1, mitochondrial -2.72 -3.15 -2.34 -2.1 -2.15 -1.8 -1.75 -1.91 -1.66 -1.34 -0.67 -0.39 -0.8 -0.7 -0.65 -0.81 -0.99 -1.2 -2.91 -2.35 -4.18 -4.18 -1.92 2.73 2.27 -4.18 -4.18 -4.18 -4.18 -4.18 -4.18 2.09 1.57 1.99 2.68 1.19 1.57 1.68 1.8 2.21 2.17 2.04 1.83 1.62 1.77 2.27 2.27 2.24 1.78 1.5 1.81 2.87 0.22 2.23 2.46 1.4 1.58 1.33 1.15 1.28 0.72 0.84 -4.18 -4.13 3.05 2.77 2.89 2.93 3.01 2.91 2.76 2.78 2.7 2.68 2.94 2.79 2.85 2.92 3.44 3.44 3.42 3.28 3.39 2.66 3.33 3.23 1.84 2.35 1.94 -0.65 2.09 -4.3 0.63 1.06 -4.18 -4.18 -1.06 -4.18 0.85 1.94 -4.18 -4.32 -4.18 2.34 1.3 1.2 2.06 1.18 0.84 1.97 0.89 0.35 -0.16 0.05 -0.46 -0.46 0.57 0.17 -0.25 -0.2 1.36 2.02 1.8 1.41 1.52 1.53 2.13 1.58 1.76 1.67 1.29 1.24 2.87 1.66 0.8 0.18 -2.36 -0.94 0.56 1.4 2.73 -4.18 -3.09 -4.18 -4.18 -4.18 1.81 0.17 2.18 1.11 0.59 -2.22 -3.04 -4.18 -4.18 -4.18 -4.18 -4.18 -4.18 -4.18 -4.18 -4.18 -0.84 -0.84 -4.18 -4.18 -1.5 At2g35370 266636_at GDCH glycine cleavage system H protein 1, mitochondrial 6 glycine dehydrogenase (decarboxylating) activity | photorespiration | glycine decarboxylation via glycine cleavage system
formylTHF biosynthesis | glycine degradation I | photorespiration




7.17 7.76
At1g31800 0.789 CYP97A3 cytochrome P450 family protein -1.28 -1.71 -1.19 -0.16 -1.04 -0.98 -0.62 -1.21 -0.44 -1.47 0.37 -0.62 -0.63 -0.68 -0.86 -0.76 -0.71 -0.86 -1.05 -1.27 -1.47 0.8 0.96 1.44 1.33 -2.27 -2.09 -1.77 -1.82 -1.36 -2.04 0.53 0.28 0.73 0.96 0.47 0.12 0.04 0.49 1 0.98 0.6 0.23 0.36 0.42 0.92 0.92 0.71 0.06 0.71 0.67 1.35 0.3 -0.6 0.3 -0.46 0.78 0.57 -0.32 -0.15 0.57 0.43 -1.29 -0.55 1.5 1.51 1.45 1.44 1.49 1.23 1.2 1.18 1.2 1.06 1.39 1.29 1.69 1.64 1.99 2.09 1.98 1.68 1.45 1.28 1.67 1.37 0.66 1.28 0.86 0.03 1.12 -2.27 -0.03 -0.74 -1.39 -1.68 -0.17 -1.7 0.31 0.96 -1.31 -1.2 -1.74 1.45 0.22 1.11 1.08 0.41 0.7 1.14 0.59 0.24 -0.17 0.02 0 -0.12 -0.04 0.07 -0.05 0.05 0.26 0.55 0.45 0.48 0.43 0.84 1.53 0.44 0.63 0.94 0.22 0.81 1.25 0.53 0.72 0.72 -0.93 0.28 0.2 0.77 1.48 -1.81 -1.67 -1.42 -1.39 -1.24 0.93 0.87 0.98 0.14 -0.07 -1.03 -1.38 -2.65 -1.93 -2.59 -2.78 -2.65 -1.39 0.01 -2.54 -2.5 -1.91 -1.91 -0.7 -0.59 -0.53 At1g31800 246268_at CYP97A3 cytochrome P450 family protein 1






cytochrome P450 family 3.58 4.87
At4g17600 0.788 LIL3:1 lil3 protein -2.39 -2.66 -1.4 -1.56 -1.33 -1.32 -1.12 -1.39 -1.24 -1.39 -0.18 0.27 0.13 -0.03 -0.07 -0.21 -0.63 -0.81 -1.85 -1.83 -2.27 -2.71 -0.57 1.97 1.5 -3.62 -4.23 -4.63 -3.77 -4.63 -4.63 1.96 0.67 1.47 2.08 1.29 1.37 1.4 1.69 1.54 1.69 1.54 1.65 1.54 1.68 1.57 1.79 1.84 1.41 1.52 1.41 1.82 -0.2 0.46 1.43 0.4 0.6 0.79 -0.04 0.08 -0.4 -0.24 -2.42 -2.59 2.22 1.89 1.99 2.15 2.17 2.12 2.06 2.17 2.29 2.06 2.17 2.23 2.43 2.45 2.39 2.43 2.4 2.31 2.31 1.82 2.18 1.95 0.88 1.45 0.99 -0.81 1.04 -5 1.07 1.68 -3.85 -4.63 -2.71 -4.63 0.05 1.32 -3.18 -3.43 -4.12 0.69 -0.09 -0.13 1.44 0.4 -0.04 1.86 1.06 0.43 0.6 0.71 0.3 0.16 1.07 0.66 0.57 0.59 0.97 1.17 0.63 0.33 0.92 0.96 1.64 1.06 1.2 0.63 0.97 1.08 1.08 -0.85 0.36 -0.33 -1.22 -0.82 0.28 0.74 1.81 -0.96 -1.21 -4.63 -4.63 -4.63 0.61 -0.21 1.79 0.64 0.45 -0.15 -0.7 -1.8 -1.89 -2.24 -2.21 -2.4 -0.97 0.7 -1.88 -1.8 -0.26 -0.26 -0.49 -0.48 0.21 At4g17600 245354_at LIL3:1 lil3 protein 8 regulation of transcription


Photosystems | additional photosystem II components | Early light-inducible proteins


6.74 7.45
At1g54350 0.785
ABC transporter family protein -0.3 -0.78 -0.56 -0.34 -0.14 -0.37 -0.59 -0.34 -0.25 -0.45 0.15 -0.7 -0.6 -0.92 -0.85 -0.62 -0.55 -0.98 -0.66 -0.65 -0.2 -1 -1.12 1.03 0.89 -1.1 -1.28 -1.63 -1.51 -1.42 -1.41 0.31 -0.09 0.64 0.48 -0.27 0.38 0.69 0.6 0.65 0.69 0.73 0.43 0.73 0.7 0.84 0.71 0.64 0.31 -0.28 0.3 0.94 -0.28 -0.72 1.34 0.22 -0.52 -0.86 -0.34 -0.1 -0.31 -0.64 -1.21 -1.04 1.21 1.22 1.02 1.11 1.24 1.28 1.08 1.19 1.17 1.18 1.38 1.17 1.4 1.4 1.53 1.67 1.68 1.75 1.62 0.23 0.8 0.85 0.56 0.48 0.55 -0.59 0.97 -1.32 -0.03 0.28 -1.14 -1 -0.54 -1.32 0.28 0.79 -1.63 -1.29 -1.34 0.13 0.32 0.76 0.92 0.04 0.53 0.22 -0.14 -0.11 -0.19 -0.3 -0.26 -0.36 -0.18 -0.13 -0.17 -0.13 0.03 0.24 0.01 0.14 -0.03 -0.06 0.12 0.74 0.72 -0.13 -0.03 0.28 0.78 0.23 -0.36 0.06 -1.26 -0.21 -0.35 -0.17 0.86 0.17 0.31 -0.66 -0.72 -0.62 1.02 0.81 -0.28 0.09 -0.08 -0.83 -0.98 -1.32 -1.07 -1.04 -0.41 -0.49 -0.27 -0.02 -0.75 -0.79 -0.42 -0.42 -0.33 -0.22 -0.51 At1g54350 263000_at
ABC transporter family protein 2




Miscellaneous acyl lipid metabolism

2.63 3.38
At5g11450 0.785
oxygen-evolving complex-related, 23 kDa polypeptide of water-oxidizing complex of photosystem II -0.28 -1.22 -1.39 -0.8 -0.8 -0.44 -0.69 -0.74 -0.64 -0.48 -0.53 -0.65 -0.66 -0.54 -0.47 -0.59 -0.62 -0.46 -0.14 -0.68 -0.82 -1.6 -0.94 1.39 0.73 -1.51 -1.59 -2.04 -2.29 -1.95 -2.5 0.77 -0.53 0.82 0.78 0.52 0.54 0.72 1.02 1.15 0.95 1.06 0.73 0.83 1.15 1.21 0.89 0.96 0.86 1.06 0.79 1.05 -0.45 -0.16 1.14 0.1 0.56 0.5 -0.11 0.25 -0.61 -0.28 -2.08 -1.13 1.11 1.17 0.98 0.99 1.19 1.06 0.89 0.89 1.04 1.12 1.07 1.27 1.49 1.78 1.79 1.62 1.45 1.83 1.78 1.04 1.31 1.01 0.25 0.23 0.21 -1.04 0.16 -1.67 -1.22 -0.12 -1.91 -2.2 -2.04 -2.04 0.19 0.67 -2.24 -2.42 -2.04 0.04 -0.57 -0.99 0.91 -0.33 -0.67 1.51 1.03 0.36 0.74 0.84 0.56 0.47 0.85 0.77 0.55 0.5 0.45 0.6 0.34 -0.16 0.1 0.28 1.07 0.27 0.38 0.21 0.55 0.77 0.9 -0.55 0.11 -0.98 -1.12 -1.53 0.07 0.52 1.55 -1.27 -1.2 -2.04 -2.04 -2.04 0.42 -0.4 1.17 0.19 -0.08 -0.35 -0.4 -0.7 -0.8 -0.86 -0.11 -0.41 -0.21 0.37 -0.66 -0.57 0.07 0.07 0.12 0.12 1.57 At5g11450 250371_at
oxygen-evolving complex-related, 23 kDa polypeptide of water-oxidizing complex of photosystem II 6
photosynthesis

Photosystems | additional photosystem II components | psbP family of thylakoid proteins


3.53 4.33
At1g69740 0.783
porphobilinogen synthase, putative / delta-aminolevulinic acid dehydratase, putative 0.13 0.59 0.24 0.07 0.25 0.13 -0.02 0.1 0.06 0.13 0.18 -0.22 -0.02 0.09 0.26 0.04 -0.03 -0.37 -0.28 -0.9 -0.62 1.4 1.61 0.79 0.75 -1.55 -1.67 -1.61 -1.85 -1.89 -1.78 0.83 -0.59 0.6 0.87 0.61 0.41 0.84 1.06 0.93 0.78 0.69 0.64 0.93 1.01 0.74 0.59 0.56 0.51 1.01 0.78 0.65 0.1 -0.06 0.92 0.43 -0.17 -0.3 0.8 0.64 -0.41 -0.24 -0.34 -0.74 0.71 0.62 0.65 0.81 0.71 0.71 0.62 0.43 0.56 0.44 0.34 1.36 1.37 1.47 1.58 1.61 1.56 0.93 0.9 0.97 1.04 0.92 -0.01 -0.53 -0.53 -1.06 0.19 -0.9 -0.81 -1.25 -0.85 -1.12 -1.1 -0.73 -0.14 0.46 -0.55 -0.68 -0.82 0.68 -0.28 -0.2 0.45 -0.04 -0.79 1.31 0.83 0.38 0.09 0.23 0.14 -0.01 -0.12 -0.12 -0.19 -0.22 0.41 0.4 0.28 -0.17 -0.27 -0.08 0.68 0.03 -0.02 0.35 0.36 0.37 0.28 -0.66 0.4 -0.53 -1.46 -1 0.19 0.5 1.34 -1.61 -1.71 -2.98 -2.98 -2.98 -0.33 0.11 0.72 0.12 0.22 0 -0.3 -0.77 -0.87 -0.98 -0.84 -0.93 -1.09 -0.78 -0.96 -1.07 -0.28 -0.28 -1.1 -1.02 0.13 At1g69740 260370_at
porphobilinogen synthase, putative / delta-aminolevulinic acid dehydratase, putative 4 porphyrin biosynthesis
chlorophyll biosynthesis | biosynthesis of proto- and siroheme Porphyrin and chlorophyll metabolism Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Chlorophyll biosynthesis and breakdown
chlorophyll and phytochromobilin metabolism | chlorophyll and phyochromobilin biosynthesis
2.94 4.59
At3g63140 0.783
similar to mRNA binding protein precursor (Lycopersicon esculentum) -1.94 -2.49 -2.74 -4.46 -2.04 -2.24 -2.48 -2.34 -1.79 -2.59 -0.85 -0.33 -2.02 -2.27 -2.61 -3.38 -4.46 -3.32 -2.49 -1.04 -1.93 -4.46 -1.7 3.41 3.1 -4.46 -4.46 -4.46 -4.46 -4.46 -4.46 2.8 1.21 2.85 3.06 1.61 2.56 2.56 2.54 2.5 2.6 2.8 2.82 2.75 2.59 2.58 2.94 3.03 2.33 1.55 2.41 3.69 0.74 0.05 3.84 2.54 1.99 1.79 2.31 2.81 0.78 0.4 -4.46 -4.46 3.47 3.15 3.28 3.28 3.54 3.49 3.33 3.45 3.49 3.45 3.39 3.66 3.83 3.81 3.93 3.93 4.05 3.9 3.88 3.11 3.82 3.68 2.11 2.4 2.31 -0.13 2.7 -4.46 0.54 0.16 -4.46 -4.46 -0.96 -4.46 0.59 2.08 -4.46 -4.46 -4.46 2.48 1.77 1.61 2.75 1.85 0.56 2.06 0.35 -0.39 -0.5 -0.16 -1.35 -1.37 0.64 -0.65 -1.45 -0.84 1.51 2.37 1.91 1.33 1.82 1.58 2.71 1.56 1.87 1.13 1.5 0.75 3.09 1.36 0.42 0.41 -1.91 -0.69 0.66 1.57 3.51 -4.46 -3.3 -4.46 -4.46 -4.46 1.93 -0.05 2.5 1.63 0.91 -3.55 -4.46 -4.46 -4.46 -4.46 -4.46 -4.46 -4.46 -4.46 -4.46 -4.46 -2.7 -2.7 -4.46 -4.46 -4.46 At3g63140 251157_at
similar to mRNA binding protein precursor (Lycopersicon esculentum) 2
biogenesis of chloroplast colanic acid building blocks biosynthesis | dTDP-rhamnose biosynthesis | galactose degradation I | UDP-glucose conversion | lactose degradation IV




8.24 8.51
At3g62910 0.782 APG3 Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development, similar to peptide chain release factor 1 (Escherichia coli) 0.44 0.16 0.75 0.95 0.75 0.76 0.82 0.5 0.66 0.52 0.09 -0.36 0.27 0.62 1.15 0.76 0.95 1.01 0.38 0.7 -0.04 -1.86 0.45 1.09 1.61 -1.86 -1.86 -1.86 -1.86 -1.86 -1.86 0.71 -0.21 1.15 1 -0.09 0.15 0.27 0.68 0.67 0.78 0.66 0.37 0.35 0.82 0.83 0.67 0.67 -1.86 0.25 -1.86 0.94 -0.7 -1.86 1.39 0.11 0.33 0.25 -0.41 -0.38 -1.86 -1.86 -1.86 -1.86 1.39 1.45 1.01 1.34 1.29 1.15 0.86 1.03 1.36 1.09 1.22 1.12 1.73 1.82 1.93 2 1.84 2.27 2.15 1.27 1.57 1.18 -0.35 0.33 -0.12 -0.53 0.57 -1.86 1.25 -1.86 -1.86 -1.86 -1.86 -1.86 -1.86 1.11 -1.86 -1.86 -1.86 -0.36 -0.68 -1.86 1.29 -0.79 0.26 1.76 1.07 0.56 0.43 0.45 0.57 0.23 0.6 0.23 0.48 0.49 0.81 0.93 0.54 0.22 0.11 0.57 1.11 0.32 0.49 0.09 0.75 1.04 0.87 -1.24 -1.86 -1.86 -1.86 -1.86 0.22 0.72 1.71 -1.86 -1.86 -1.86 -1.86 -1.86 0.06 -1.86 1.25 -0.41 -0.61 -1.7 -1.86 -1.86 -1.86 -1.86 -0.92 -1.02 -0.98 0.83 -1.26 -1.22 -0.57 -0.57 1.2 1.44 0.66 At3g62910 251193_at APG3 Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development, similar to peptide chain release factor 1 (Escherichia coli) 2 chloroplast organization and biogenesis protein synthesis | translation
Translation factors



3.54 4.14
At5g24300 0.782
similar to starch synthase I-1 (Triticum aestivum) 0.44 -0.12 0 0.3 0.04 -0.31 -0.28 -0.18 -0.12 -0.19 -0.48 -0.28 0.23 0.13 0 -0.54 -0.28 -0.12 0.04 -0.1 0.25 -1.44 -0.36 0.92 0.1 -0.64 -0.7 -1.11 -1 -0.99 -0.63 0.2 -0.32 0.2 0.34 0.24 0.31 0.6 0.59 0.28 0.02 0.23 0.61 0.79 0.63 0.5 0.36 0.57 0.4 -0.28 -0.06 0.86 -0.06 -1.46 1.42 0.4 0.8 0.51 -0.08 0.13 0.18 -0.14 -0.92 -0.52 1.43 1.31 1.21 0.8 0.36 0.4 0.59 0.93 1.22 1.43 1.58 0.34 1.22 1.25 1.42 0.76 0.21 1.68 1.7 0.48 0.83 0.79 0.07 0.22 -0.14 -0.54 0.05 -1.3 -0.76 -1.93 -1.93 -1.26 -0.53 -1.09 -0.21 0.34 -1.32 -1.14 -1.15 0.46 -0.08 -0.75 0.46 0.38 -0.03 0.18 0.21 -0.11 0.34 0.25 0.23 0.2 0.31 -0.01 0.1 0.11 0.19 0.54 0.55 -0.36 0.67 0.35 0.7 0.28 0.36 0.04 0.71 0.27 1.07 -0.2 0.41 -0.8 -0.16 -1.31 0.01 -0.05 1.05 0.05 0.19 -1.27 -1.93 -1.93 0.46 -0.72 0.56 0.73 0.78 0.33 0.01 -1.23 -1.72 -1.59 -2.14 -1.74 -0.5 0.65 -1.8 -1.49 -0.83 -0.83 -0.21 -0.72 1.07 At5g24300 249785_at
similar to starch synthase I-1 (Triticum aestivum) 4



Cell Wall Carbohydrate Metabolism | starch metabolism


2.80 3.84
At1g42970 0.781 GAPB Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase. -2.68 -2.82 -2.59 -1.96 -2.14 -2.39 -2.11 -1.95 -2.04 -2.1 0.17 0.41 -0.63 -0.68 -1.14 -1.66 -1.94 -3.54 -2.37 -2.67 -3.05 -3.77 -0.98 3.02 2.96 -5.31 -5.31 -5.31 -5.31 -5.31 -5.31 2.59 1.44 2.91 2.86 1.99 2.15 2.25 1.95 2.46 2.7 2.5 2.52 2.2 2.18 2.64 2.79 2.85 2.17 2.29 2.52 3.33 0.61 0.74 3.25 1.44 1.69 1.3 1.37 1.96 1.12 0.92 -5.31 -4.05 3.06 2.81 2.83 3.09 3.39 3.36 3.24 3.21 3.19 3.02 2.99 3.31 3.35 3.14 3.41 3.54 3.64 3.42 3.45 2.94 3.51 3.45 2.14 2.1 1.75 0.7 2.63 -5.3 -0.11 -2.04 -5.31 -5.31 -0.77 -5.31 0.81 1.57 -5.09 -4.2 -5.31 1.91 1.62 0.89 2.02 1.63 1.19 2.08 0.81 -0.18 -0.19 -0.05 -0.77 -1.03 0.56 -0.44 -1.1 -0.96 1.42 2.27 2.09 1.5 1.78 1.59 2.39 1.37 1.5 0.73 1.34 0.48 3.1 1.79 0.95 0.3 -1.19 -0.34 0.5 1.56 3.1 -5.31 -4.01 -5.31 -5.31 -5.31 1.51 0.77 1.9 2.02 1.94 0.66 0.28 -2.33 -3.92 -5.31 -3.92 -3.95 -4.67 -4.3 -4.17 -4.01 -0.78 -0.78 -5.31 -5.31 -1.49 At1g42970 259625_at GAPB Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase. 10
C-compound and carbohydrate metabolism | glycolysis and gluconeogenesis | photosynthesis gluconeogenesis | glycerol degradation II | sorbitol fermentation | fructose degradation (anaerobic) | acetate fermentation | glycolysis I | glyceraldehyde 3-phosphate degradation | glycolysis IV Glycolysis / Gluconeogenesis Intermediary Carbon Metabolism


8.66 8.94
At3g63410 0.781 APG1 Encodes a MPBQ/MSBQ methyltansferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosythesis. -0.72 -1.68 -1 -0.44 -0.52 -0.56 -0.53 -0.42 -0.54 -0.5 -0.38 -0.06 -0.28 -0.32 -0.23 -0.28 -0.34 -0.28 -0.55 -0.51 -1.15 -1.99 -0.11 1.35 0.84 -1.77 -2.15 -2.89 -2.85 -2.64 -2.52 1.04 0.07 1.07 1.14 0.75 0.7 1.01 0.82 0.87 1.12 1.14 1.1 1.02 1.02 0.99 1.13 1.35 0.95 1.06 1.18 1.43 0.13 0.25 1.46 0.47 0.38 0.61 0.05 0.52 -0.33 0.03 -1.63 -1.22 1.29 1.18 1.11 1.22 1.43 1.4 1.5 1.43 1.5 1.3 1.24 1.25 1.57 1.37 1.43 1.5 1.58 1.94 1.94 1.23 1.57 1.4 0.65 0.45 0.27 -1.09 0.37 -1.74 -0.16 -0.74 -2.54 -1.78 -0.56 -2.38 0.17 0.9 -1.84 -1.68 -2.33 0.96 -0.16 -0.82 0.75 0.12 -0.21 1.05 0.82 0.54 0.65 0.8 0.64 0.7 0.71 0.67 0.67 0.59 0.61 0.63 0.39 -0.12 0.47 0.41 1.12 0.5 0.56 0.5 0.44 0.36 0.91 -0.47 0.35 -0.8 -1.32 -1.32 0.18 0.37 1.33 -2.74 -2.6 -3.45 -3.05 -3.05 0.2 -0.32 0.88 0.84 1.06 1.17 0.9 -0.73 -1.47 -1.99 -2.43 -2.66 -1.14 0.04 -2.38 -2.57 -0.75 -0.75 0.03 -0.12 0.52 At3g63410 251118_at APG1 Encodes a MPBQ/MSBQ methyltansferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosythesis. 10 vitamin E biosynthesis | plastoquinone biosynthesis biogenesis of chloroplast vitamin E biosynthesis | plastoquinone biosynthesis
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Tocopherol biosynthesis | Plastoquinone biosynthesis


4.05 5.39
At3g10840 0.779
hydrolase, alpha/beta fold family protein -1.28 -1.65 -1.65 -1.65 -1.65 -1.65 -1.65 -0.78 -1.65 -1.1 -1.65 -0.81 -1.65 -0.68 -1.24 -1.38 -1 -1.65 -0.96 -1.65 -0.71 -1.65 -1.65 2.2 0.7 -0.57 -1.24 -1.06 -1.46 -0.96 -1.32 1.61 0.32 1.98 1.12 0.06 0.88 0.47 1.19 1.57 1.62 1.41 1.06 0.66 1.23 1.66 1.68 1.56 0.89 -0.26 0.32 0.89 0.01 -0.67 0.81 -1.31 0.42 0.04 -1.51 -0.99 -1.53 -1.43 -1.65 -2.09 1.87 1.72 1.33 1.57 1.68 1.21 1.75 2.11 1.75 1.09 1.55 1.1 1.96 1.75 2.42 2.31 2.23 2.61 2.56 0.81 1.41 1.12 0.06 0.07 -0.63 -1.14 0.9 -1.73 -0.78 -1.65 -1.65 -1.65 -1.65 -1.65 0.16 0.36 -1.65 -1.65 -1.65 -0.14 -0.73 -0.69 0.78 -0.45 -0.27 1.54 1.07 1.34 0.44 0.73 0.73 0.84 0.86 0.94 0.91 1.09 1.64 1.73 1.17 0.52 1.24 1.19 1.91 0.73 0.92 0.4 1.42 1.25 0.93 -0.83 0.77 -0.48 -1.26 -1.07 1.11 1.34 1.38 -0.33 -0.92 -1.65 -1.65 -1.65 0.8 0.09 1.64 0.65 0.18 0.36 0.09 -1.65 -1.65 -1.65 -1.65 -1.65 -1.65 -1.48 -1.65 -1.65 -1.21 -1.21 -1.65 -1.65 -1.12 At3g10840 257533_at
hydrolase, alpha/beta fold family protein 2




Lipid signaling

3.59 4.70
At4g34190 0.779
Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding. -1.22 -2.52 -0.65 -1.12 -0.93 -0.79 -1.24 -0.99 -0.7 -0.91 -0.39 -1.18 -1.27 -1.44 -1.44 -1.02 -1.39 -1.32 -1.62 -0.87 -2.06 -1.59 0.22 2.17 1.64 -3.57 -3.59 -3.54 -3.55 -2.77 -3.53 1.54 0.34 1.62 1.96 0.84 1.26 1.44 1.18 1.56 1.48 1.44 1.42 1.42 1.4 1.46 1.54 1.68 1.43 1.64 1.72 1.95 -0.39 0.82 1.7 0.54 0.37 0.34 0.31 0.57 -0.38 -0.42 -2.63 -2.17 1.9 1.7 1.76 1.83 1.85 1.79 1.83 1.87 2.02 1.91 1.84 1.82 2.14 2.08 2.15 2.19 2.11 2.08 2.11 1.38 2.06 1.92 1.2 1.32 1.24 -0.33 0.93 -3.11 0.55 1.81 -3.01 -3.44 -1.36 -2.88 0.22 1.14 -2.25 -2.48 -2.67 1.31 0.05 0.02 1.05 0.11 -0.22 1.2 0.39 0.01 0.05 0.22 0.01 -0.07 0.33 -0.04 -0.07 -0.16 0.57 0.98 0.75 0.47 0.67 0.65 1.25 0.8 0.91 1.17 0.55 0.27 1.61 0.84 0.27 0 -1.39 -0.48 0.1 0.51 1.67 -3.04 -2.96 -2.47 -2.5 -2.12 0.55 -0.09 1.23 0.56 0.42 -0.55 -0.87 -1.99 -2.27 -2.33 -1.26 -1.39 -1.33 -0.5 -1.25 -2.52 -0.98 -0.98 -1.36 -1.28 -0.12 At4g34190 253272_at
Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding. 8 response to high light intensity | chlorophyll binding


Photosystems | additional photosystem II components | Early light-inducible proteins


5.04 5.77
At2g25840 0.777
tRNA synthetase class I (W and Y) family protein 0.7 -0.33 0.02 0.61 0.42 0.56 0.12 0.33 0.33 0.48 -0.42 -0.22 0.31 0.06 0.3 -0.16 -0.08 -0.08 0.61 0.26 -0.21 -0.65 -0.56 0.95 0.66 -0.18 -0.28 -0.43 -0.46 0.04 -0.27 0.87 -0.66 0.43 0.67 0.48 -0.05 0.38 0.55 0.72 0.57 0.36 0.13 0.23 0.97 0.88 0.35 0.57 -0.12 0.84 0.35 0.87 -0.27 -0.92 0.68 0.18 0.19 -0.07 -0.23 -0.03 -0.99 -0.63 -1.35 -0.79 0.66 0.87 0.49 0.64 1.12 1.15 0.95 0.26 0.39 0.24 0.41 1.38 1.11 1.1 1.31 1.28 1.47 1.32 1.04 1 0.99 0.67 -0.33 -0.28 -0.6 -1.49 -0.54 -1.05 -1.08 -0.48 -1.45 -1.36 -1.36 -1.82 -0.38 0.74 -2.1 -1.85 -1.71 0.05 -0.83 -0.55 0.71 -0.35 -0.81 1.67 1.14 0.69 0.44 0.87 0.59 0.48 0.88 0.53 0.69 0.74 0.63 0.8 0.4 -0.33 0.55 0.14 1.04 0.22 0.19 0.32 0.7 0.84 0.26 -1.47 0.19 -2 -1.47 -1.61 0.39 0.56 1.39 0.18 -0.02 -0.97 -0.81 -1.15 -0.24 -0.72 0.82 -0.36 -0.5 -0.63 -1.02 -1.87 -1.49 -1.59 -1.83 -2 -0.65 0.57 -2.02 -2.04 -0.4 -0.4 -0.56 -0.67 1.44 At2g25840 266648_at
tRNA synthetase class I (W and Y) family protein 2


Tryptophan metabolism | Aminoacyl-tRNA biosynthesis Phenylpropanoid Metabolism | Aromatic amino acid (Phe, Tyr, Trp) metabolism


2.95 3.77
At1g23740 0.770
oxidoreductase, zinc-binding dehydrogenase family protein, -1.07 -1.67 -0.84 -1.28 -1.13 -0.96 -1.12 -1.44 -1.32 -1.69 1.01 0.67 0.19 0.45 -0.43 -0.65 -0.82 -1.12 -1.64 -1.53 -1.9 -1.96 -0.49 2.49 1.96 -3.99 -3.99 -3.99 -3.99 -3.99 -3.99 2.29 0.6 2.44 1.37 0.81 2.11 1.56 0.62 1.15 2.31 2.44 2.43 1.29 0.94 1.83 2.27 2.45 2.17 1.76 1.9 2.18 0.56 0.79 2.41 0.37 -0.75 0.32 -0.16 0.62 -1.2 -0.59 -2.92 -3.99 1.04 1.03 0.79 0.8 1.79 2.25 2.46 2.74 2.68 1.72 1.1 2.02 2.74 1.74 1.89 1.73 2.38 2.78 2.69 1.34 2.08 1.98 1.38 0.34 1.08 1.06 1.86 -3.99 0.1 -0.11 -3.99 -3.99 -1.96 -3.99 0.01 0.83 -2.46 -2.16 -3.99 -0.03 0.91 0 0.86 1.22 2.18 1.47 0.41 -0.21 -0.31 0.18 -0.45 -0.26 0.53 0.2 -0.27 -0.11 1.04 1.71 1.39 1.34 1.18 1.58 1.47 0.66 1.07 -0.47 0.93 0.3 2.31 1.92 0.77 1.06 -1.36 0.68 0.56 1.26 2.1 -3.99 -3.99 -3.99 -3.99 -3.99 0.89 0.35 2 2.1 1.66 -0.18 -0.74 -1.1 -2.14 -2.61 -1.93 -2.02 -2.04 -1.4 -1.95 -2.2 -1.77 -1.77 -3.2 -2.92 -0.86 At1g23740 265182_at
oxidoreductase, zinc-binding dehydrogenase family protein, 2

threonine degradation




6.43 6.77
At3g52380 0.770 CP33 similar to chloroplast RNA-binding protein (cp33) (Arabidopsis thaliana) -1.08 -1.65 -0.51 -0.4 -0.63 -0.45 -0.35 -0.27 -0.36 -0.66 -0.5 -0.62 -0.72 -0.46 -0.27 -0.25 -0.3 -0.5 -0.33 -0.78 -0.66 -2.12 -0.65 1.09 0.47 -1.08 -0.93 -1.06 -1.81 -1.35 -1.2 1.32 -0.21 0.97 1.58 0.7 1.11 0.7 1.22 1.31 1.18 1.12 1.01 0.6 1.52 1.43 1.24 0.94 0.91 1.27 1.25 1.25 -0.43 -0.37 1.24 0.14 0.3 0.66 0.21 0.22 -0.13 -0.08 -1.72 -1.15 1.53 1.41 1.26 1.35 1.52 1.54 1.37 1.32 1.5 1.43 1.45 1.93 2.17 2.38 2.36 2.15 2.02 2.31 2.31 1.21 1.62 1.2 0.04 0.69 0.06 -1.06 0.04 -2.31 -1.12 -2.1 -2.39 -2.61 -1.06 -2.65 0 0.92 -2.73 -2.86 -2.65 0.33 -0.7 -1.03 0.9 -0.75 -0.18 1.3 0.83 0.14 0.14 0.44 0.31 -0.11 0.31 0.15 -0.11 -0.11 0.27 0.59 0.15 -0.62 -0.12 0.22 0.79 0.54 0.73 0.36 0.32 0.56 0.61 -1.94 -0.06 -1.8 -2.25 -2.65 -0.39 0.02 1.46 -2.65 -2.29 -2.65 -2.65 -2.65 -0.59 -0.38 0.56 -0.24 0.05 -0.43 -0.66 0.6 0.47 0.49 -0.72 -0.82 0.25 0.85 -0.81 -1.12 -0.01 -0.01 -0.22 -0.19 0.62 At3g52380 256678_at CP33 similar to chloroplast RNA-binding protein (cp33) (Arabidopsis thaliana) 4
biogenesis of chloroplast

mRNA processing in chloroplast


4.25 5.24
At3g12780 0.767 PGK1 phosphoglycerate kinase, putative -1.36 -1.47 -1.13 -1.01 -0.95 -1.01 -0.79 -0.98 -0.98 -0.93 -1.13 -0.9 -0.97 -0.97 -1.05 -1.03 -1.15 -1.32 -1.35 -1.51 -1.59 -2.66 -1.95 1.64 1.13 -1.73 -2.02 -2.45 -2.56 -2.45 -2.25 1.35 0.63 1.25 1.83 1.05 1.12 1.12 1.17 1.26 1.34 1.13 1.41 1.2 1.11 1.28 1.54 1.61 1.05 0.86 1.25 1.93 0.2 0.06 1.37 0.89 0.65 0.59 0.86 1.12 0.63 0.6 -1.93 -1.02 1.92 1.67 1.78 1.84 1.95 1.8 1.83 1.88 1.95 1.84 1.95 1.9 1.98 2 2.06 2.16 2.17 2.25 2.29 1.88 2.2 2.06 0.9 1.37 1.03 -0.32 1.2 -1.97 -0.1 -0.41 -2.02 -2.41 -1.02 -2.02 -0.16 0.9 -2.12 -1.91 -1.96 1.12 0.62 0.5 1.17 0.84 0.46 0.95 0.28 -0.39 -0.37 -0.19 -0.5 -0.77 -0.03 -0.04 -0.67 -0.71 0.28 0.8 0.61 0.33 0.47 0.34 1.22 0.44 0.75 -0.01 0.35 -0.1 1.44 0.36 0.42 0.11 -1.21 -0.41 -0.26 0.47 1.54 -2.02 -1.56 -3.02 -2.91 -3.51 0.74 -0.02 1.01 0.76 0.57 0.32 -0.1 -1.34 -1.91 -1.88 -1.93 -1.49 -1.49 -1.81 -1.64 -1.88 -0.95 -0.95 -3.05 -2.89 -1.29 At3g12780 256228_at (m) PGK1 phosphoglycerate kinase, putative 4
C-compound and carbohydrate metabolism | glycolysis and gluconeogenesis | photosynthesis gluconeogenesis | glycerol degradation II | Calvin cycle | sorbitol fermentation | fructose degradation (anaerobic) | acetate fermentation | glycolysis I | glyceraldehyde 3-phosphate degradation | glycolysis IV Glycolysis / Gluconeogenesis | Carbon fixation Intermediary Carbon Metabolism


4.41 5.80
At2g26930 0.766 ATCDPMEK Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase. -0.15 -0.84 -0.14 0.21 -0.06 -0.14 -0.08 -0.19 -0.13 -0.1 0.34 -0.01 0.33 0.18 0.23 -0.03 0.11 0.08 -0.06 -0.13 -0.26 -0.03 0.28 0.31 -0.38 0.01 -0.17 -0.28 -0.49 -0.4 -0.32 0.47 -0.21 -0.1 0.39 0.04 0.42 0.53 0.63 0.61 0.75 0.81 0.39 0.68 0.57 0.73 0.64 0.66 0.33 0.15 -0.01 0.32 -0.5 -0.24 0.71 -0.09 0.19 0.18 0.16 0.06 -0.18 -0.04 -0.55 -0.38 0.81 0.49 0.57 0.51 0.57 0.59 0.53 0.47 0.68 0.72 0.82 0.37 0.76 0.93 1.02 0.95 0.68 1.26 1.15 0.32 0.43 0.17 0.33 0.73 0.53 -0.37 0.12 -0.9 -0.11 -0.22 -0.43 -0.82 -0.44 -0.57 0.27 0.72 -0.81 -0.95 -0.67 -0.09 -0.5 -0.04 0.59 -0.6 0.28 0.8 0.42 -0.09 -0.32 -0.51 -0.27 -0.61 -0.33 -0.48 -0.53 -0.49 -0.17 -0.2 -0.17 -0.38 -0.41 -0.11 0.38 -0.08 0.16 0.12 -0.2 0.57 0.02 -0.51 -0.12 -1.07 -0.97 -0.79 -0.28 0.25 0.74 -0.44 -0.07 -0.57 -0.57 -0.57 0.38 -0.16 0.35 -0.42 -0.26 -0.53 -0.57 -0.57 -0.57 -0.57 -1.03 -1.4 -0.42 0.37 -1.01 -1.33 -0.67 -0.67 -0.07 0.13 0.2 At2g26930 266863_at ATCDPMEK Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase. 10


Biosynthesis of steroids Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Biosynthesis of prenyl diphosphates
IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis | MEP (methylerythritol P) pathway, plastids
1.63 2.66
At3g18890 0.764
similar to UV-B and ozone similarly regulated protein 1 UOS1 (Pisum sativum) -0.88 -2.21 -2.21 -2.21 -2.21 -2.21 -2.21 -2.21 -2.21 -2.21 0.04 -1.39 -2.21 -2.21 -1.01 -2.21 -2.21 -0.76 -0.19 -2.21 -0.61 -2.21 -1.88 2.08 1.21 -2.21 -2.21 -2.21 -2.21 -2.21 -2.21 1.09 0.27 1.31 1.85 1.01 1.58 1.83 1.88 1.64 1.33 1.64 1.97 2.04 1.91 1.65 1.65 1.84 1.25 0.03 1.08 2.62 0.05 -1.14 3.09 1.49 0.89 1.08 1.24 1.61 0.8 0.45 -1.74 -1.14 2.43 2.04 2.12 1.84 1.72 1.95 1.83 2.1 2.42 2.44 2.43 1.57 2.59 2.67 2.65 1.92 1.84 2.78 2.65 1.92 2.62 2.27 1.25 1.36 1.34 -1.17 0.84 -2.33 0.38 -2.21 -2.21 -2.21 -0.23 -2.21 0.57 1.71 -2.21 -2.21 -2.21 1.85 0.34 -0.1 1.81 0.35 -0.14 1.47 0.38 -0.27 -0.05 0.4 -0.36 -0.24 0.49 -0.02 -0.26 -0.1 0.72 0.92 0.82 0.08 1.05 0.67 1.84 0.83 0.77 0.82 0.9 0.91 1.6 -1.01 0.13 -1.27 -1.59 -1.7 0.1 0.61 2.42 -2.21 -1.83 -2.21 -2.21 -2.21 0.72 -1.19 1.21 0.47 0.11 -0.55 -1.59 -2.21 -2.21 -2.21 -2.21 -2.21 -2.21 -2.21 -2.21 -2.21 -1.33 -1.33 -2.21 -2.21 -2.06 At3g18890 256655_at
similar to UV-B and ozone similarly regulated protein 1 UOS1 (Pisum sativum) 4



Chloroplastic protein import via envelope membrane | Tic apparatus


4.65 5.42
At5g52100 0.763
weak similarity to dihydrodipicolinate reductase (Corynebacterium glutamicum) -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 1.19 2 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 1.35 0.08 1.5 1.4 0.37 0.85 1.29 1.26 1.39 1.17 1.2 1.3 1.36 1.42 1.44 1.22 1.24 1.09 0.88 0.94 1.52 -0.99 0.31 2.06 0.61 0.16 -0.28 -0.06 0.31 -1.63 -1.63 -1.63 -1.63 1.98 2.06 1.83 1.82 2.06 1.88 1.31 1.38 1.74 1.72 1.97 1.53 1.72 1.77 1.79 2.02 2.29 2.02 1.94 0.95 1.56 1.37 0.99 0.94 0.9 -1.63 0.72 -1.63 0.18 -0.13 -1.63 -1.63 -1.63 -1.63 1.39 2.09 -1.63 -1.63 -1.63 0.76 -0.03 0.79 1.75 0.25 -0.62 1.78 0.97 0.32 0.71 0.84 0.64 0.76 0.72 0.53 0.59 0.8 0.86 1.24 0.76 0.53 0.99 0.65 1.22 1.34 0.94 0.88 0.82 0.95 1.09 -1.6 0.52 -0.96 -1.63 -1.63 0.39 0.94 2.08 -1.63 -1.63 -1.63 -1.63 -1.63 1.03 -1.63 1.22 -0.08 -0.17 -1.11 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -1.63 -0.43 -0.43 -1.63 -1.63 0.2 At5g52100 248402_at
weak similarity to dihydrodipicolinate reductase (Corynebacterium glutamicum) 2

lysine biosynthesis I Lysine biosynthesis Biosynthesis of Amino Acids and Derivatives | Lysin from aspartate


3.63 3.92
At3g25920 0.761 RPL15 50S ribosomal protein L15, chloroplast (CL15) -0.17 -0.7 -0.83 -0.81 -0.54 -0.66 -0.67 -0.8 -0.85 -0.91 -1.24 -2.79 -2.22 -2.02 -1.77 -1.84 -1.61 -1.66 -1.94 -2.02 -2.29 -2.59 -1.88 1.21 0.87 -2.14 -1.84 -1.88 -2.24 -1.89 -2.09 1.35 0.2 0.74 1.62 1.02 1.09 1.47 1.49 1.32 1.28 1.22 1.4 1.35 1.31 1.4 1.26 1.44 1.21 1.29 1.17 1.45 -0.18 0.34 1.41 0.77 0.32 0.6 0.73 0.98 -0.84 -0.25 -3.13 -1.97 1.59 1.64 1.55 1.52 1.59 1.73 1.44 1.42 1.5 1.58 1.45 1.85 1.89 2.04 2.17 2.22 2.17 2.09 2.15 1.68 1.93 1.61 0.97 1.14 0.87 -1.84 -0.13 -2.23 -1 -1.17 -2.31 -2.95 -1.4 -2.72 0.67 1.62 -2.31 -2.21 -2.62 1.46 -0.41 -0.94 1.51 0.13 -0.64 1.7 1.11 0.51 0.31 0.47 0.33 -0.03 0.47 0.15 0.11 0.02 0.93 1.18 0.82 0.22 0.46 0.56 1.45 0.82 0.95 1.34 0.69 0.86 1.03 -1.57 0.88 -1.13 -1.3 -1.47 0.54 1.03 1.94 -1.21 -1.09 -2.75 -2.63 -2.65 0.28 -0.97 1.55 0.4 0.37 -0.02 -0.35 -1.18 -1.45 -1.73 -1.31 -1.53 -0.4 0.5 -1.82 -2.22 0.1 0.1 -0.16 -0.03 0.46 At3g25920 258076_at RPL15 50S ribosomal protein L15, chloroplast (CL15) 6 protein biosynthesis | protein biosynthesis | plastid large ribosomal subunit

Ribosome



4.39 5.35
At4g18480 0.761 CHLI1 Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. -2.02 -2.9 -1.46 -1.8 -1.6 -1.64 -1.48 -1.53 -1.65 -1.5 -0.48 -0.42 -0.74 -0.53 -0.87 -0.71 -1.03 -1.35 -1.61 -2.22 -3.59 -2.69 -0.8 2.14 1.57 -2.39 -2.31 -2.83 -2.95 -2.83 -3.29 1.67 0.15 1.91 1.99 1.42 1.4 1.48 1.45 1.36 1.55 1.66 1.83 1.7 1.65 1.51 1.52 1.7 1.41 1.32 1.79 1.88 0.24 -0.49 2.02 0.68 0.88 0.71 0.24 1.09 0.06 0.45 -1.7 -1.17 1.96 1.77 1.64 1.68 1.91 2 1.94 1.93 2.19 2.06 1.82 2.04 2.5 2.52 2.27 2.18 2.29 2.69 2.67 1.68 2.04 1.79 1.24 1.05 1.12 -1.14 0.68 -3.04 -0.48 0.35 -2.77 -3.85 -1.73 -2.92 0.4 1.33 -2.81 -2.29 -2.7 1.13 0.1 -0.88 1.62 0.23 -0.44 1.98 1.49 0.66 0.66 0.96 0.82 0.54 1.05 0.89 0.66 0.62 0.87 1.06 0.93 0.4 0.94 1.18 1.99 0.98 1.29 1.26 0.93 1.2 1.33 -0.44 1.05 0.04 -0.9 -0.31 0.37 0.91 2.11 -2.13 -1.76 -4.49 -4.49 -4.49 0.74 0.36 1.61 0.77 0.86 0.47 -0.05 -2.16 -3.34 -4.28 -4.49 -4.49 -2.89 0.09 -4.49 -4.76 -0.34 -0.34 -0.67 -0.86 0.45 At4g18480 254623_at CHLI1 Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. 10 magnesium chelatase activity | chlorophyll biosynthesis | magnesium chelatase complex
chlorophyll biosynthesis Porphyrin and chlorophyll metabolism Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Chlorophyll biosynthesis and breakdown
chlorophyll and phytochromobilin metabolism | chlorophyll biosynthesis
5.90 7.46
At5g36700 0.759
similar to phosphoglycolate phosphatase (Chlamydomonas reinhardtii) -2.19 -2.65 -2.65 -3.5 -2.57 -2.27 -1.98 -2.2 -2.6 -2.44 -0.9 -1.07 -2.2 -1.87 -1.99 -1.82 -1.88 -2.22 -3.5 -2.42 -3.5 -3.5 -1.69 2.12 1.87 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 1.97 1.48 1.68 2.37 1.01 1.64 1.42 1.5 1.66 1.99 1.94 1.93 1.44 1.56 1.87 2.22 2.18 1.49 0.91 1.62 2.79 0.21 1.01 2.47 0.91 0.56 0.38 0.5 1.12 0.17 -0.04 -2.95 -3.21 2.69 2.54 2.56 2.6 2.83 2.86 2.78 2.82 2.84 2.6 2.76 2.42 2.62 2.33 2.46 2.83 2.85 2.94 2.96 2.4 3 2.83 1.58 2.56 2.45 0.88 2.27 -3.57 -0.25 -0.71 -3.5 -3.5 -1.07 -3.5 0.88 1.93 -3.5 -3.38 -3.5 2.17 1.78 1.66 2.04 1.63 1.43 1.57 0.28 -0.1 -0.28 0.27 -0.12 -0.07 0.52 0.03 -0.04 0.05 1.2 1.83 1.49 0.99 1.48 1.24 1.92 1.46 1.66 1.18 1.32 1.2 2.35 1.09 1.17 0.33 -1.02 0.02 0.67 1.18 2.47 -0.71 -0.54 -2.63 -2.63 -3.5 2.12 1.02 2.2 1.53 1.18 -0.97 -1.5 -3.32 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -2.06 -2.06 -3.81 -3.5 -3.73 At5g36700 249658_s_at (m)
similar to phosphoglycolate phosphatase (Chlamydomonas reinhardtii) 2

superpathway of serine and glycine biosynthesis II | cysteine biosynthesis II | glycine biosynthesis I | serine biosynthesis | photorespiration




6.32 6.81
At5g36790 0.759
similar to phosphoglycolate phosphatase (Chlamydomonas reinhardtii) -2.19 -2.65 -2.65 -3.5 -2.57 -2.27 -1.98 -2.2 -2.6 -2.44 -0.9 -1.07 -2.2 -1.87 -1.99 -1.82 -1.88 -2.22 -3.5 -2.42 -3.5 -3.5 -1.69 2.12 1.87 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 1.97 1.48 1.68 2.37 1.01 1.64 1.42 1.5 1.66 1.99 1.94 1.93 1.44 1.56 1.87 2.22 2.18 1.49 0.91 1.62 2.79 0.21 1.01 2.47 0.91 0.56 0.38 0.5 1.12 0.17 -0.04 -2.95 -3.21 2.69 2.54 2.56 2.6 2.83 2.86 2.78 2.82 2.84 2.6 2.76 2.42 2.62 2.33 2.46 2.83 2.85 2.94 2.96 2.4 3 2.83 1.58 2.56 2.45 0.88 2.27 -3.57 -0.25 -0.71 -3.5 -3.5 -1.07 -3.5 0.88 1.93 -3.5 -3.38 -3.5 2.17 1.78 1.66 2.04 1.63 1.43 1.57 0.28 -0.1 -0.28 0.27 -0.12 -0.07 0.52 0.03 -0.04 0.05 1.2 1.83 1.49 0.99 1.48 1.24 1.92 1.46 1.66 1.18 1.32 1.2 2.35 1.09 1.17 0.33 -1.02 0.02 0.67 1.18 2.47 -0.71 -0.54 -2.63 -2.63 -3.5 2.12 1.02 2.2 1.53 1.18 -0.97 -1.5 -3.32 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -2.06 -2.06 -3.81 -3.5 -3.73 At5g36790 249658_s_at (m)
similar to phosphoglycolate phosphatase (Chlamydomonas reinhardtii) 4
phosphate metabolism superpathway of serine and glycine biosynthesis II | cysteine biosynthesis II | glycine biosynthesis I | serine biosynthesis | photorespiration




6.32 6.81
At3g55040 0.757
similar to In2-1 protein, Zea mays -0.28 -0.93 -0.73 -0.69 -0.94 -0.93 -0.85 -0.32 -0.06 -0.15 0.15 0.11 -0.07 -0.12 -0.25 -0.71 -0.75 -0.79 0.04 0.3 0.6 -0.57 -0.69 1.02 0.81 -1.59 -1.9 -1.94 -1.86 -2.47 -1.9 0.7 0.49 0.51 0.93 -0.2 0.49 0.54 0.76 0.76 0.92 0.89 0.76 0.73 0.67 0.93 1.11 1.05 0.6 0.21 0.32 1.56 -0.36 0.2 1.68 0.95 0.76 0.25 0.97 1.28 0.16 0.45 -0.55 -0.94 1.47 1.42 1.5 1.42 1.57 1.32 1.38 1.32 1.34 1.32 1.58 1.03 1.4 1.32 1.68 1.79 1.59 1.58 1.57 0.91 1.61 1.59 0.41 0.86 0.78 0.39 1.4 -1.31 0.44 -0.01 -1.84 -1.37 -0.84 -2.44 0.26 0.32 -3 -2.88 -2.2 0.47 0.05 0.25 0.43 -0.2 -0.23 0.49 -0.2 -0.48 -0.83 -0.8 -0.6 -0.88 -0.71 -0.84 -0.99 -1.12 -0.23 0.17 0.15 0.15 0.04 0.13 0.57 -0.06 0.17 0.04 -0.17 0.24 1.47 0.71 -0.86 -0.6 -1.74 -0.42 -0.39 -0.04 1.46 -0.85 -0.81 -2.21 -1.94 -1.66 1.23 0.83 0.53 0.43 0.25 -0.82 -1.31 -1.45 -1.89 -1.32 -0.46 -0.74 -0.48 -0.03 -0.66 -0.57 -1.27 -1.27 -0.14 0.24 -0.04 At3g55040 251820_at
similar to In2-1 protein, Zea mays 2






Glutathione S-transferase, Lambda family 3.47 4.79
At1g32470 0.756
similar to Glycine cleavage system H protein 1, mitochondrial precursor from Arabidopsis thaliana -3.62 -3.62 -3.62 -3.62 -1.6 -3.62 -2.08 -1.43 -3.62 -1.58 0.28 -0.32 -0.73 -0.37 -0.92 -0.95 -0.64 -1.78 -3.62 -3.62 -3.62 -3.62 -1.68 2.8 2.64 -3.62 -3.62 -3.62 -3.62 -3.62 -3.62 2.25 1.4 2.5 2.57 1.48 1.49 1.77 1.63 2.15 2.13 1.85 1.82 1.75 1.81 2.23 2.22 1.98 1.75 1.88 2.11 2.54 0.7 1.58 2.27 1.3 1.29 0.83 0.62 1.3 -0.69 0.11 -3.62 -1.63 2.66 2.52 2.56 2.74 2.84 2.56 2.58 2.5 2.5 2.31 2.7 2.47 2.64 2.47 2.92 3.13 3.07 3.12 3.04 2.52 3.02 2.77 1.43 1.59 1.46 -1.94 1.47 -3.62 0.15 0.79 -3.62 -3.62 -0.33 -3.62 0.66 1.35 -3.62 -3.62 -3.62 2.02 1.32 0.56 1.82 1.57 0.26 2.12 1.28 0.55 0.63 1 0.6 0.32 1.24 0.79 0.51 0.3 1.29 1.74 1.52 1.1 1.31 1.18 2.27 1.14 1.44 1.17 1.2 1.43 2.27 0.02 0.61 -0.14 -1.01 -0.94 0.97 1.67 2.78 -3.62 -3.62 -3.62 -3.62 -3.62 1.3 -1.49 1.99 0.78 0.64 -0.92 -1.75 -3.62 -3.62 -3.62 -3.62 -3.62 -3.62 -3.62 -3.62 -3.62 -0.57 -0.57 -3.62 -3.62 -1.54 At1g32470 260704_at
similar to Glycine cleavage system H protein 1, mitochondrial precursor from Arabidopsis thaliana 4

glycine degradation I




6.39 6.75
At2g02500 0.756 ISPD 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase (ISPD) 1.49 0.75 0.62 0.89 0.96 1.13 1.03 1.14 1.22 1.43 -0.39 0.2 1.19 1.23 1.5 1.25 1.56 1.22 1 1.12 0.61 -1.57 -0.31 0.94 0.5 -0.68 -0.9 -1.27 -1.03 -1.02 -0.64 0.41 -0.65 0.28 0.68 0.03 0.55 0.9 0.85 0.9 1.12 1.01 0.72 1.01 0.92 0.63 0.56 0.39 0.56 -0.14 -0.15 0.94 -0.27 -0.66 1.09 0.4 0 0.33 0.01 -0.12 -1.19 -0.96 -1.61 -1.64 0.84 0.79 0.5 0.71 0.61 0.56 0.52 0.56 0.85 0.89 0.92 1.11 1.49 1.68 1.75 1.6 1.57 1.21 0.96 0.86 1.18 0.87 -0.14 0.51 0.56 -1.47 -0.32 -0.36 -0.89 -0.14 -1.46 -1.04 -1.25 -1.49 0 0.72 -1.5 -1.32 -1.39 -0.39 -0.28 -1.57 0.34 -0.38 -1.25 1.43 1.04 0.49 0.54 0.56 0.4 0.16 -0.6 -0.54 -0.56 -0.55 0.46 0.47 0.6 -0.15 -0.6 -0.91 -0.24 -0.17 -0.11 0.51 0.61 -0.2 0.46 -1.32 0.72 -0.92 -0.76 -1.49 0.59 0.78 1.56 -0.79 -0.62 -1.57 -1.57 -1.57 -0.11 -1.66 0.66 0.08 0.06 -0.33 -0.45 -1.73 -1.72 -2 -2.02 -2.29 -1.36 -0.7 -1.87 -2.14 -1.9 -1.9 -1.91 -2.23 -0.28 At2g02500 267220_at ISPD 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase (ISPD) 10

isopentenyl diphosphate biosynthesis -- mevalonate-independent
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Biosynthesis of prenyl diphosphates
IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphat) biosynthesis | MEP (methylerythritol P) pathway, plastids
3.30 4.04
At3g25660 0.756
similar to Glutamyl-tRNA(Gln) amidotransferase subunit A (Bacillus subtilis) -0.81 -0.81 -0.81 -0.81 -0.81 -0.81 -0.81 -0.81 -0.81 -0.81 -0.21 -0.65 -0.81 -0.81 -0.81 -0.81 -0.81 -0.81 -0.53 -0.57 -0.66 -0.81 -1.14 0.93 0.72 -0.8 -0.87 -0.81 -1.08 -0.81 -1.18 0.7 -0.32 0.59 0.65 0.24 0.64 0.83 1.12 1.06 0.95 1.04 0.88 1.02 1.08 1.01 1.12 1.1 0.57 0.95 0.72 0.91 -0.34 -0.87 0.86 0.28 0.31 0.36 0.04 0.15 -0.53 -0.56 -1.28 -0.68 1.03 1.17 0.85 0.87 0.84 1.03 0.82 0.8 1.02 0.98 0.99 1.47 1.77 1.97 1.85 1.92 1.87 1.75 1.53 0.8 1.35 0.92 -0.48 0.31 -0.03 -1.26 -0.24 -0.89 0.26 -0.45 -0.8 -1.22 -0.81 -0.55 0.26 0.59 -1.1 -0.92 -0.56 0.25 -0.69 -0.81 0.45 -0.39 -0.74 1.37 0.64 0.14 0.45 0.63 0.28 0.34 0.14 -0.18 -0.23 -0.08 0.28 0.48 0.02 -0.5 -0.44 -0.05 0.56 -0.06 -0.13 0.33 0.31 0.66 0.6 -1.01 0.01 -0.73 -1.18 -1.13 -0.1 0.24 1.28 -0.1 -0.31 -0.81 -0.81 -0.81 0.23 -0.71 1.05 -0.23 -0.27 -0.53 -0.91 -1.19 -1.26 -0.95 -0.82 -0.76 -0.64 0.25 -1.04 -1.18 -0.77 -0.77 -0.39 -0.66 0.59 At3g25660 256728_at
similar to Glutamyl-tRNA(Gln) amidotransferase subunit A (Bacillus subtilis) 2


Other translation factors



2.51 3.25
At4g11175 0.756
translation initiation factor IF-1, chloroplast, putative -1.15 -1.26 -1.46 -1.32 -1.19 -1.02 -1.25 -1.41 -1.65 -1.41 -0.2 -0.93 -0.95 -0.95 -0.7 -0.52 -1.07 -0.86 -1.38 -0.94 -1.35 -0.75 -0.87 2.16 1.32 -2 -2.24 -1.8 -2.25 -1.8 -2.39 1.41 -0.36 1.89 1.6 0.47 0.64 0.37 0.8 0.99 1.02 0.72 0.23 0.55 0.87 0.97 0.8 0.74 0.43 1.46 1.5 1.22 -0.85 0.33 1.09 0.03 0.6 0.57 -0.28 -0.21 -0.78 -0.43 -0.83 -1.38 1.71 1.58 1.47 1.42 1.48 1.15 1.42 1.81 1.94 1.54 1.6 1.61 2.62 2.43 2.56 2.52 2.15 2.78 2.61 0.91 1.4 1.12 0.72 1.05 0.86 -0.59 0.38 -1.77 -1.25 -0.63 -1.12 -1.59 -1.8 -1.71 0.21 0.36 -1.34 -1.57 -1.77 0.33 -0.69 -0.78 0.66 -0.56 0.37 1.38 0.7 -0.02 -0.46 -0.36 -0.32 -0.82 0.02 -0.43 -0.44 -0.57 0.12 0.21 -0.02 -0.25 0.34 0.8 1.53 0.35 0.64 0.79 0.22 1.09 0.98 0.18 -0.53 -0.42 -2.22 -1.05 -0.31 0.1 0.99 -0.49 -1.01 -1.8 -1.8 -1.8 0.49 0.43 0.91 0.15 0.16 -0.47 -0.63 -0.12 -0.22 -0.42 -1.46 -1.75 -0.32 0.88 -1.18 -1.15 -1.2 -1.2 0.43 0.92 0.26 At4g11175 254910_at
translation initiation factor IF-1, chloroplast, putative 4


Translation factors Translation (chloroplast)


3.72 5.18
At4g31850 0.754 PGR3 encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs -0.84 -1.15 -0.76 -0.74 -1.24 -0.95 -0.64 -1.05 -0.92 -0.95 -0.55 -0.75 -0.54 -0.26 -0.55 -0.69 -0.42 -0.99 -0.82 -0.59 -0.59 -1.54 -1.2 1.13 1.02 -1.19 -1.8 -1.41 -1.54 -1.13 -1.42 0.89 0.15 0.88 1.2 0.37 0.5 0.55 1.2 0.92 0.86 0.86 0.69 0.82 1.13 0.93 0.87 0.89 0.4 0.71 0.52 1.05 -0.81 -0.76 1.47 0.84 0.28 -0.05 0.11 0.49 -0.35 -0.98 -1.76 -1.65 1.49 1.46 1.02 0.91 1.34 0.91 0.88 0.97 1.21 1.42 1.37 1.3 1.76 1.99 1.71 1.73 1.81 1.62 1.62 0.64 1.06 0.93 0.4 0.59 0.19 -0.23 0.79 -2.06 0.36 -1.04 -1.39 -1.41 -0.41 -1.41 0.45 0.6 -1.41 -1.61 -1.41 -0.03 -0.37 0.04 0.68 -0.3 -0.13 1.02 0.4 -0.11 0.15 0.1 -0.06 -0.21 0.35 -0.13 -0.12 -0.09 0.18 0.45 0.12 -0.34 0.24 0.06 0.92 0.2 0.27 0.06 0.28 0.28 0.42 -0.8 -0.25 -0.68 -1.36 -1.1 -0.35 0.15 1.23 -1.41 -1.41 -1.41 -1.41 -1.41 0.31 -0.38 0.09 0.08 -0.21 -0.69 -0.71 -0.57 -0.6 -0.28 -0.21 0.42 -0.42 0.6 0.14 -1.32 0.25 0.25 0.47 0.03 0.31 At4g31850 253495_at (m) PGR3 encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs 10



mRNA processing in chloroplast


2.87 4.06
At5g57030 0.754 LUT2 Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase -0.53 -0.86 -0.35 -0.9 -0.86 -0.92 -0.65 -0.94 -0.9 -0.94 -0.18 -0.48 -0.56 -0.49 -0.65 -0.93 -0.71 -1.22 -0.69 -1.07 -0.68 -1.04 -0.54 0.72 0.45 -2.29 -1.79 -0.87 -1.38 -1.15 -1.53 0.5 0.23 0.82 0.75 -0.07 0.82 0.8 0.93 1.18 1.15 1.23 1.12 0.79 1.03 1.07 1.02 1.25 0.76 -0.13 0.13 0.87 -0.56 -0.77 1.59 0.17 0.02 -0.25 -0.31 0.09 -0.37 -0.5 -1.44 -1.71 1.21 0.95 0.61 0.77 1.12 1.05 0.56 1.1 1.53 1.18 1.22 0.88 1.57 1.12 1.5 1.15 1.41 1.37 1.28 0.42 0.93 0.94 0.07 0.62 0.35 -0.61 0.7 -2.34 1.19 0.89 -1.07 -1.92 -0.62 -1.63 0.46 0.8 -2.09 -2.04 -1.77 -0.06 -0.01 -0.22 0.95 0.04 -0.25 0.82 0.32 0.13 0.24 0.33 0.53 0.31 0.38 0.26 0.39 0.44 0.65 0.98 1.07 0.96 1.15 0.89 0.38 1.07 1.27 0.5 0.68 0.86 0.98 -0.07 2.04 1.56 0.97 1.36 0.7 0.9 1.37 -0.74 -0.81 -0.91 -0.41 0.15 0.28 -0.54 0.65 -0.26 -0.63 -1.37 -1.53 -1.98 -1.44 -1.26 -1.9 -1.71 -1.62 -0.65 -2 -2.69 -0.95 -0.95 -1.41 -1.84 -0.46 At5g57030 247936_at LUT2 Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase 10 carotene biosynthesis | lycopene epsilon cyclase activity | photosynthesis light harvesting
carotenoid biosynthesis Biosynthesis of steroids Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | Carotenoid biosynthesis
Carotenoid and abscisic acid metabolism | carotenid biosynthesis
3.24 4.72


























































































































































































page created by Juergen Ehlting 06/08/06