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| Pathways co-expressed in two data set with differential expression |
(more than 6 points in each set) |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all four data sets. Lists for each individual dataset are shown underneath. To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
245 |
70 |
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| pectin metabolism |
BioPath |
159 |
53 |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
118 |
45 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
83 |
24 |
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| cellulose biosynthesis |
BioPath |
70 |
12 |
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For more information on how these pathway maps were generated please read the methods page |
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| fatty acid metabolism |
TAIR-GO |
68 |
13 |
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| Glycan Biosynthesis and Metabolism |
KEGG |
50 |
7 |
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| Fructose and mannose metabolism |
KEGG |
48 |
8 |
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| Glycerolipid metabolism |
KEGG |
38 |
5 |
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| triacylglycerol degradation |
AraCyc |
36 |
15 |
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| long-chain fatty acid metabolism |
TAIR-GO |
36 |
8 |
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| hemicellulose biosynthesis |
BioPath |
32 |
4 |
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| Diterpenoid biosynthesis |
KEGG |
30 |
3 |
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| Gibberellin metabolism |
LitPath |
30 |
3 |
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| gibberellic acid catabolism |
TAIR-GO |
29 |
3 |
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| ubiquinone biosynthesis |
BioPath |
24 |
3 |
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| cell wall organization and biogenesis (sensu Magnoliophyta) |
TAIR-GO |
24 |
3 |
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| biosynthesis of proto- and siroheme |
AraCyc |
24 |
4 |
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| ubiquinone biosynthesis |
LitPath |
24 |
3 |
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| Pathways co-expressed in the Organ and Tissue data set |
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CYP98A8 (At1g74540) |
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| max. difference between log2-ratios: |
8.29 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.94 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
42 |
0.000 |
15 |
0.001 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
34 |
0.000 |
8 |
0.002 |
| fatty acid metabolism |
TAIR-GO |
26 |
0.000 |
4 |
0.000 |
| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
22 |
0.000 |
4 |
0.001 |
| Cell Wall Carbohydrate Metabolism |
BioPath |
20 |
0.002 |
5 |
0.187 |
| sexual reproduction |
TAIR-GO |
20 |
0.000 |
5 |
0.000 |
| Biosynthesis of prenyl diphosphates |
BioPath |
14 |
0.000 |
3 |
0.001 |
| triacylglycerol degradation |
AraCyc |
14 |
0.000 |
6 |
0.000 |
| polyisoprenoid biosynthesis |
AraCyc |
12 |
0.000 |
3 |
0.000 |
| Phenylpropanoid pathway |
LitPath |
11 |
0.002 |
5 |
0.001 |
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| Pathways co-expressed in the Mutant data set |
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CYP98A8 (At1g74540) |
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| max. difference between log2-ratios: |
8.09 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
1.00 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
93 |
0.000 |
24 |
0.000 |
Link to mutants heatmap |
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| pectin metabolism |
BioPath |
77 |
0.000 |
21 |
0.000 |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
54 |
0.000 |
21 |
0.000 |
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| C-compound and carbohydrate metabolism |
FunCat |
46 |
0.000 |
13 |
0.009 |
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| Starch and sucrose metabolism |
KEGG |
33 |
0.000 |
6 |
0.000 |
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| Phenylpropanoid pathway |
LitPath |
31 |
0.000 |
7 |
0.000 |
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| biogenesis of cell wall |
FunCat |
26 |
0.000 |
9 |
0.000 |
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| Glycan Biosynthesis and Metabolism |
KEGG |
26 |
0.000 |
4 |
0.002 |
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| core phenylpropanoid metabolism |
BioPath |
24 |
0.000 |
4 |
0.009 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
22 |
0.001 |
7 |
0.066 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
20 |
0.001 |
3 |
0.108 |
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| sexual reproduction |
TAIR-GO |
20 |
0.000 |
5 |
0.000 |
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| Glutamate/glutamine from nitrogen fixation |
BioPath |
14 |
0.000 |
2 |
0.005 |
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| fatty acid metabolism |
TAIR-GO |
14 |
0.000 |
3 |
0.000 |
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| long-chain fatty acid metabolism |
TAIR-GO |
14 |
0.000 |
3 |
0.000 |
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| very-long-chain fatty acid metabolism |
TAIR-GO |
14 |
0.000 |
3 |
0.000 |
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| lactose degradation IV |
AraCyc |
14 |
0.000 |
4 |
0.000 |
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| triacylglycerol degradation |
AraCyc |
14 |
0.000 |
6 |
0.000 |
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| assimilation of ammonia, metabolism of the glutamate group |
FunCat |
14 |
0.000 |
2 |
0.018 |
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| nitrogen and sulfur metabolism |
FunCat |
14 |
0.000 |
2 |
0.015 |
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| Glutamate metabolism |
KEGG |
14 |
0.000 |
2 |
0.023 |
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| Glycerolipid metabolism |
KEGG |
14 |
0.000 |
2 |
0.011 |
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| Nitrogen metabolism |
KEGG |
14 |
0.000 |
2 |
0.010 |
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| Oxidative phosphorylation |
KEGG |
14 |
0.000 |
3 |
0.020 |
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| Biosynthesis of prenyl diphosphates |
BioPath |
12 |
0.023 |
2 |
0.134 |
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| Galactose metabolism |
KEGG |
12 |
0.000 |
2 |
0.010 |
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| lignin biosynthesis |
AraCyc |
11 |
0.001 |
5 |
0.000 |
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| isoprenoid biosynthesis |
FunCat |
11 |
0.042 |
3 |
0.080 |
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| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
11 |
0.017 |
3 |
0.053 |
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