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| Pathways co-expressed in both data sets with co-expressed genes |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all four data sets. Lists for each individual dataset are shown underneath. To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
98 |
21 |
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| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis |
LitPath |
56 |
13 |
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| sexual reproduction |
TAIR-GO |
40 |
5 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
37 |
7 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
34 |
3 |
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For more information on how these pathway maps were generated please read the methods page |
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| Biosynthesis of prenyl diphosphates |
BioPath |
26 |
2 |
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| fatty acid metabolism |
TAIR-GO |
22 |
3 |
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| long-chain fatty acid metabolism |
TAIR-GO |
22 |
3 |
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| very-long-chain fatty acid metabolism |
TAIR-GO |
22 |
3 |
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| lignin biosynthesis |
AraCyc |
20 |
5 |
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| Phenylpropanoid pathway |
LitPath |
20 |
5 |
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| cuticle biosynthesis |
TAIR-GO |
16 |
2 |
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| suberin biosynthesis |
AraCyc |
14 |
3 |
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| Pathways co-expressed in the Organ and Tissue data set |
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CYP98A9 (At1g74550) |
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| max. difference between log2-ratios: |
5.33 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
2.02 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
44 |
0.000 |
16 |
0.000 |
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| sexual reproduction |
TAIR-GO |
20 |
0.000 |
5 |
0.000 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
15 |
0.001 |
5 |
0.046 |
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| Biosynthesis of prenyl diphosphates |
BioPath |
14 |
0.000 |
3 |
0.000 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
14 |
0.000 |
3 |
0.000 |
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| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.012 |
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| lignin biosynthesis |
AraCyc |
9 |
0.000 |
4 |
0.000 |
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| Phenylpropanoid pathway |
LitPath |
9 |
0.000 |
4 |
0.001 |
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| cuticle biosynthesis |
TAIR-GO |
8 |
0.000 |
2 |
0.000 |
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| fatty acid metabolism |
TAIR-GO |
8 |
0.000 |
2 |
0.001 |
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| long-chain fatty acid metabolism |
TAIR-GO |
8 |
0.000 |
2 |
0.000 |
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| very-long-chain fatty acid metabolism |
TAIR-GO |
8 |
0.000 |
2 |
0.000 |
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| suberin biosynthesis |
AraCyc |
7 |
0.000 |
3 |
0.000 |
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| Pathways co-expressed in the Mutant data set |
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CYP98A9 (At1g74550) |
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| max. difference between log2-ratios: |
5.07 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
1.32 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
93 |
0.000 |
24 |
0.000 |
Link to mutants heatmap |
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| pectin metabolism |
BioPath |
77 |
0.000 |
21 |
0.000 |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
54 |
0.000 |
21 |
0.000 |
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| C-compound and carbohydrate metabolism |
FunCat |
46 |
0.000 |
13 |
0.008 |
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| Starch and sucrose metabolism |
KEGG |
33 |
0.000 |
6 |
0.000 |
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| biogenesis of cell wall |
FunCat |
26 |
0.000 |
9 |
0.000 |
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| Glycan Biosynthesis and Metabolism |
KEGG |
26 |
0.000 |
4 |
0.002 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
22 |
0.000 |
7 |
0.043 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
20 |
0.000 |
3 |
0.097 |
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| sexual reproduction |
TAIR-GO |
20 |
0.000 |
5 |
0.000 |
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| Glutamate/glutamine from nitrogen fixation |
BioPath |
14 |
0.000 |
2 |
0.005 |
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| fatty acid metabolism |
TAIR-GO |
14 |
0.000 |
3 |
0.000 |
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| long-chain fatty acid metabolism |
TAIR-GO |
14 |
0.000 |
3 |
0.000 |
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| very-long-chain fatty acid metabolism |
TAIR-GO |
14 |
0.000 |
3 |
0.000 |
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| lactose degradation IV |
AraCyc |
14 |
0.000 |
4 |
0.000 |
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| assimilation of ammonia, metabolism of the glutamate group |
FunCat |
14 |
0.000 |
2 |
0.017 |
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| nitrogen and sulfur metabolism |
FunCat |
14 |
0.000 |
2 |
0.014 |
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| Glutamate metabolism |
KEGG |
14 |
0.000 |
2 |
0.023 |
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| Glycerolipid metabolism |
KEGG |
14 |
0.000 |
2 |
0.011 |
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| Nitrogen metabolism |
KEGG |
14 |
0.000 |
2 |
0.010 |
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| Biosynthesis of prenyl diphosphates |
BioPath |
12 |
0.009 |
2 |
0.123 |
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| fatty acid biosynthesis -- initial steps |
AraCyc |
12 |
0.000 |
4 |
0.000 |
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| triacylglycerol degradation |
AraCyc |
12 |
0.000 |
5 |
0.001 |
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| Galactose metabolism |
KEGG |
12 |
0.000 |
2 |
0.010 |
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| lignin biosynthesis |
AraCyc |
11 |
0.001 |
5 |
0.000 |
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| isoprenoid biosynthesis |
FunCat |
11 |
0.038 |
3 |
0.075 |
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| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
11 |
0.016 |
3 |
0.049 |
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| Phenylpropanoid pathway |
LitPath |
11 |
0.019 |
5 |
0.002 |
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