Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP702A2 (At4g15300) save all data as Tab Delimited Table










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Pathways co-expressed in all 3 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.

















there are no co-expressed pathways found in all 3 applicable data sets

































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP702A2 (At4g15300)







max. difference between log2-ratios: 0.0











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

























this gene is not expressed to detectable levels in any experiment





























































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP702A2 (At4g15300)







max. difference between log2-ratios: 4.7











max. difference between log2-ratios excluding lowest and highest 5%: 1.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Cell Wall Carbohydrate Metabolism BioPath 44.5 0.000 10 0.077
Fructose and mannose metabolism KEGG 32 0.000 5 0.000
Glucosinolate Metabolism LitPath 30 0.000 3 0.001
Biosynthesis of Amino Acids and Derivatives BioPath 28 0.009 5 0.126
Stilbene, coumarine and lignin biosynthesis KEGG 28 0.000 10 0.000
Branched-chain amino acids from aspartate BioPath 24 0.000 3 0.002
leucine biosynthesis AraCyc 24 0.000 3 0.000
Pyruvate metabolism KEGG 24 0.000 3 0.069
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 22 0.000 3 0.040
Valine, leucine and isoleucine biosynthesis KEGG 22 0.000 3 0.004
triterpene, sterol, and brassinosteroid metabolism LitPath 21 0.000 4 0.025
glucosinolate biosynthesis TAIR-GO 20 0.000 2 0.000
Benzoate degradation via CoA ligation KEGG 18 0.000 2 0.301










Inositol phosphate metabolism KEGG 18 0.000 2 0.349










Methane metabolism KEGG 18 0.000 9 0.000










Nicotinate and nicotinamide metabolism KEGG 18 0.000 2 0.260










Phenylalanine metabolism KEGG 18 0.000 9 0.000










Prostaglandin and leukotriene metabolism KEGG 18 0.000 9 0.000










cellulose biosynthesis BioPath 16 0.000 2 0.065










hemicellulose biosynthesis BioPath 16 0.000 2 0.004










Glycan Biosynthesis and Metabolism KEGG 16 0.000 2 0.154










Glycerolipid metabolism KEGG 16 0.000 2 0.033










transport FunCat 14 0.000 3 0.000










transport facilitation FunCat 14 0.000 3 0.000










Biosynthesis of prenyl diphosphates BioPath 12 0.005 2 0.061










GDP-carbohydrate biosynthesis BioPath 12 0.000 2 0.001










colanic acid building blocks biosynthesis AraCyc 12 0.000 2 0.011










polyprenyl diphosphate biosynthesis LitPath 12 0.000 2 0.001










secondary metabolism FunCat 11 0.001 3 0.016












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP702A2 (At4g15300)







max. difference between log2-ratios: 4.8











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Cell Wall Carbohydrate Metabolism BioPath 14.5 0.003 3 0.070





core phenylpropanoid metabolism BioPath 12 0.000 2 0.001




Phenylpropanoid Metabolism BioPath 12 0.000 2 0.047




Lipid signaling AcylLipid 11 0.000 2 0.015




cellulose biosynthesis BioPath 10 0.000 1 0.020




hemicellulose biosynthesis BioPath 10 0.000 1 0.003










Fructose and mannose metabolism KEGG 10 0.000 1 0.001










Glycan Biosynthesis and Metabolism KEGG 10 0.000 1 0.002










Glycerolipid metabolism KEGG 10 0.000 1 0.001










lipases pathway AraCyc 9 0.000 1 0.000










degradation FunCat 9 0.000 1 0.001










intracellular signalling FunCat 9 0.000 1 0.003










lipid, fatty acid and isoprenoid degradation FunCat 9 0.000 1 0.001










second messenger mediated signal transduction FunCat 9 0.000 1 0.000










mono-/sesqui-/di-terpene biosynthesis LitPath 8 0.000 2 0.003










terpenoid metabolism LitPath 8 0.000 2 0.003





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP702A2 (At4g15300)







max. difference between log2-ratios: 1.7











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Phenylpropanoid pathway LitPath 32 0.000 6 0.000



Phenylpropanoid Metabolism BioPath 22 0.000 4 0.009


lignin biosynthesis AraCyc 20 0.000 4 0.000


Nucleotide sugars metabolism KEGG 16 0.000 3 0.000


biogenesis of chloroplast FunCat 14 0.000 2 0.013


core phenylpropanoid metabolism BioPath 12 0.000 2 0.005


Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 10 0.000 2 0.009


Chlorophyll biosynthesis and breakdown BioPath 10 0.000 1 0.027


Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 10 0.000 1 0.023


Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 10 0.012 1 0.139


ethylene biosynthesis TAIR-GO 10 0.000 1 0.001


gibberellic acid catabolism TAIR-GO 10 0.000 1 0.000










lignin biosynthesis TAIR-GO 10 0.000 1 0.001










phenylpropanoid metabolism TAIR-GO 10 0.000 1 0.000










biosynthesis of proto- and siroheme AraCyc 10 0.000 1 0.019










aerobic respiration FunCat 10 0.000 1 0.007










respiration FunCat 10 0.000 1 0.007










secondary metabolism FunCat 10 0.000 1 0.088










Diterpenoid biosynthesis KEGG 10 0.000 1 0.002










Porphyrin and chlorophyll metabolism KEGG 10 0.000 1 0.008










Propanoate metabolism KEGG 10 0.000 1 0.010










chlorophyll and phytochromobilin metabolism LitPath 10 0.008 1 0.112










Gibberellin metabolism LitPath 10 0.000 1 0.034










giberelin catabolism LitPath 10 0.000 1 0.000










phytochromobilin biosynthesis LitPath 10 0.000 1 0.006










arabinose biosynthesis TAIR-GO 9 0.000 1 0.000










cell wall biosynthesis (sensu Magnoliophyta) TAIR-GO 9 0.000 1 0.003










IAA conjugate biosynthesis II AraCyc 9 0.000 1 0.000










Galactose metabolism KEGG 9 0.000 1 0.011










Translation factors KEGG 8 0.000 3 0.001










response to auxin stimulus TAIR-GO 7 0.000 1 0.001



























page created by Juergen Ehlting 04/27/06