Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP705A13 (At2g14100)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways common in all data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 15 annotation points)						CYP705A13 (At2g14100)
max. difference between log2-ratios:				4.5
max. difference between log2-ratios excluding lowest and highest 5%:				2.3
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Stilbene, coumarine and lignin biosynthesis	KEGG	64	0.000	26	0.000
Methane metabolism	KEGG	58	0.000	26	0.000
Phenylalanine metabolism	KEGG	54	0.000	25	0.000
Prostaglandin and leukotriene metabolism	KEGG	54	0.000	25	0.000
Cell Wall Carbohydrate Metabolism	BioPath	43	0.000	11	0.047
Phenylpropanoid Metabolism	BioPath	39	0.000	12	0.000
mono-/sesqui-/di-terpene biosynthesis	LitPath	39	0.000	7	0.000
terpenoid metabolism	LitPath	39	0.000	7	0.000
triterpene, sterol, and brassinosteroid metabolism	LitPath	32	0.000	8	0.012
Biosynthesis of steroids	KEGG	28	0.000	5	0.004
detoxification	FunCat	27	0.000	10	0.000
pectin metabolism	BioPath	21	0.000	8	0.004
flavonol biosynthesis	AraCyc	21	0.000	6	0.000
Glucosyltransferases for benzoic acids	BioPath	20	0.000	2	0.002
Miscellaneous acyl lipid metabolism	AcylLipid	20	0.000	9	0.000
triterpene biosynthesis	LitPath	20	0.000	3	0.002
monoterpenoid biosynthesis	TAIR-GO	19	0.000	2	0.000
monoterpene biosynthesis	LitPath	19	0.000	2	0.002
secondary metabolism	FunCat	18	0.000	5	0.001
Fructose and mannose metabolism	KEGG	18	0.000	2	0.210
lactose degradation IV	AraCyc	16	0.000	3	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP705A13 (At2g14100)
max. difference between log2-ratios:				6.1
max. difference between log2-ratios excluding lowest and highest 5%:				0.8
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
mono-/sesqui-/di-terpene biosynthesis	LitPath	12	0.000	3	0.001
terpenoid metabolism	LitPath	12	0.000	3	0.001
Pathways co-expressed in the Hormone etc. data set (with more than 8 annotation points)
max. difference between log2-ratios:				3.3
max. difference between log2-ratios excluding lowest and highest 5%:				1.6
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Cell Wall Carbohydrate Metabolism	BioPath	32.5	0.000	7	0.034
pectin metabolism	BioPath	22.5	0.000	6	0.001
Biosynthesis of steroids	KEGG	19	0.000	4	0.000
Phenylpropanoid Metabolism	BioPath	16	0.006	3	0.137
triterpene, sterol, and brassinosteroid metabolism	LitPath	15	0.000	3	0.023
flavonol biosynthesis	AraCyc	14	0.000	2	0.000
C-compound and carbohydrate metabolism	FunCat	14	0.000	4	0.046
Stilbene, coumarine and lignin biosynthesis	KEGG	14	0.000	7	0.000
Methane metabolism	KEGG	12	0.000	6	0.000
Pentose and glucuronate interconversions	KEGG	12	0.000	2	0.001
Phenylalanine metabolism	KEGG	12	0.000	6	0.000
Prostaglandin and leukotriene metabolism	KEGG	12	0.000	6	0.000
Terpenoid biosynthesis	KEGG	12	0.000	3	0.000
GDP-carbohydrate biosynthesis	BioPath	10	0.000	1	0.006
Glucosyltransferases for benzoic acids	BioPath	10	0.000	1	0.010
colanic acid building blocks biosynthesis	AraCyc	10	0.000	1	0.047
dTDP-rhamnose biosynthesis	AraCyc	10	0.000	1	0.029
galactose degradation I	AraCyc	10	0.000	1	0.001
glucose conversion	AraCyc	10	0.000	1	0.025
lactose degradation IV	AraCyc	10	0.000	1	0.001
UDP-glucose conversion	AraCyc	10	0.000	1	0.024
Fructose and mannose metabolism	KEGG	10	0.000	1	0.098
Oxidative phosphorylation	KEGG	10	0.000	2	0.051
Pathways co-expressed in the Mutant data set (with more than 8 annotation points)						CYP705A13 (At2g14100)
max. difference between log2-ratios:				4.3
max. difference between log2-ratios excluding lowest and highest 5%:				1.3
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
core phenylpropanoid metabolism	BioPath	20	0.000	2	0.002
Phenylpropanoid Metabolism	BioPath	20	0.000	2	0.080
lignin biosynthesis	TAIR-GO	20	0.000	2	0.000
lignin biosynthesis	AraCyc	20	0.000	2	0.002
Phenylpropanoid pathway	LitPath	20	0.000	2	0.006
Biosynthesis of Amino Acids and Derivatives	BioPath	14	0.003	2	0.074
Methionin/SAM/ethylene metabolism from cysteine and aspartate	BioPath	14	0.000	2	0.001
Stilbene, coumarine and lignin biosynthesis	KEGG	14	0.000	3	0.009
Chlorophyll biosynthesis and breakdown	BioPath	10	0.000	1	0.016
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)	BioPath	10	0.004	1	0.087
chlorophyll biosynthesis	TAIR-GO	10	0.000	1	0.004
chlorophyll biosynthesis	AraCyc	10	0.000	1	0.041
methionine and S-adenosylmethionine synthesis	AraCyc	10	0.000	1	0.001
methionine degradation I	AraCyc	10	0.000	1	0.002
phenylpropanoid biosynthesis	AraCyc	10	0.000	1	0.001
suberin biosynthesis	AraCyc	10	0.000	1	0.005
amino acid metabolism	FunCat	10	0.000	1	0.027
Flavonoid biosynthesis	KEGG	10	0.000	1	0.008
Inositol phosphate metabolism	KEGG	10	0.000	3	0.009
Methionine metabolism	KEGG	10	0.000	1	0.012
Porphyrin and chlorophyll metabolism	KEGG	10	0.000	1	0.021
Selenoamino acid metabolism	KEGG	10	0.000	1	0.026
chlorophyll and phytochromobilin metabolism	LitPath	10	0.000	1	0.013
chlorophyll biosynthesis	LitPath	10	0.000	1	0.001
page created by Juergen Ehlting	06/06/06