Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP705A15 (At3g20080) save all data as Tab Delimited Table










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Pathways co-expressed in the 3 data sets with co-expressed pathways(with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






terpenoid metabolism LitPath 24 6



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP705A15 (At3g20080)







max. difference between log2-ratios: 1.3











max. difference between log2-ratios excluding lowest and highest 5%: 0.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Biosynthesis of prenyl diphosphates BioPath 10 0.000 1 0.002


Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 10 0.000 1 0.003

Biosynthesis of steroids KEGG 10 0.000 1 0.000










Terpenoid biosynthesis KEGG 10 0.000 1 0.000










prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 10 0.000 1 0.000










terpenoid metabolism LitPath 8 0.000 2 0.001












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP705A15 (At3g20080)







max. difference between log2-ratios: 2.2











max. difference between log2-ratios excluding lowest and highest 5%: 0.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Cell Wall Carbohydrate Metabolism BioPath 12 0.000 2 0.016
gibberellic acid biosynthesis TAIR-GO 10 0.000 1 0.000
seed germination TAIR-GO 10 0.000 1 0.000
Diterpenoid biosynthesis KEGG 10 0.000 1 0.000
Gibberellin metabolism LitPath 10 0.000 1 0.015
giberelin biosynthesis LitPath 10 0.000 1 0.009










trehalose biosynthesis TAIR-GO 9 0.000 1 0.000










trehalose biosynthesis I AraCyc 9 0.000 1 0.002










trehalose biosynthesis II AraCyc 9 0.000 1 0.001










trehalose biosynthesis III AraCyc 9 0.000 1 0.000










C-compound and carbohydrate metabolism FunCat 9 0.002 1 0.269










energy FunCat 9 0.000 1 0.000










metabolism of energy reserves (e.g. glycogen, trehalose) FunCat 9 0.000 1 0.000










cellulose biosynthesis BioPath 8 0.000 1 0.003










hemicellulose biosynthesis BioPath 8 0.000 1 0.000










Fructose and mannose metabolism KEGG 8 0.000 1 0.006










Glycan Biosynthesis and Metabolism KEGG 8 0.000 1 0.011










Glycerolipid metabolism KEGG 8 0.000 1 0.003










mono-/sesqui-/di-terpene biosynthesis LitPath 8 0.000 2 0.004










terpenoid metabolism LitPath 8 0.000 2 0.005












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP705A15 (At3g20080)







max. difference between log2-ratios: 0.9











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Lipid signaling AcylLipid 11 0.000 2 0.000





Cell Wall Carbohydrate Metabolism BioPath 10.5 0.000 3 0.011




lipases pathway AraCyc 9 0.000 1 0.000




degradation FunCat 9 0.000 1 0.002




intracellular signalling FunCat 9 0.000 1 0.008










lipid, fatty acid and isoprenoid degradation FunCat 9 0.000 1 0.002










second messenger mediated signal transduction FunCat 9 0.000 1 0.000










mono-/sesqui-/di-terpene biosynthesis LitPath 8 0.000 2 0.001










terpenoid metabolism LitPath 8 0.000 2 0.001





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP705A15 (At3g20080)







max. difference between log2-ratios: 1.5











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

















Link to mutants heatmap






there are no co-expressed genes with more than 6 annotation points





















page created by Juergen Ehlting 06/06/06