Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP705A20 (At3g20110) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are no co-expressed pathways common in all data sets



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP705A20 (At3g20110)







max. difference between log2-ratios: 4.8











max. difference between log2-ratios excluding lowest and highest 5%: 3.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Cell Wall Carbohydrate Metabolism BioPath 31 0.000 7 0.004


cellulose biosynthesis BioPath 20 0.000 3 0.000

Glycerolipid metabolism KEGG 20 0.000 3 0.001

Methane metabolism KEGG 18 0.000 8 0.000

hemicellulose biosynthesis BioPath 16 0.000 2 0.000

Fructose and mannose metabolism KEGG 16 0.000 2 0.016

Glycan Biosynthesis and Metabolism KEGG 16 0.000 2 0.037

Phenylalanine metabolism KEGG 14 0.000 7 0.000

Prostaglandin and leukotriene metabolism KEGG 14 0.000 7 0.000

Stilbene, coumarine and lignin biosynthesis KEGG 14 0.000 7 0.000

Phenylpropanoid Metabolism BioPath 12 0.011 3 0.050

pectin metabolism BioPath 11 0.000 4 0.006

flavonol biosynthesis AraCyc 11 0.000 2 0.000










Glucosyltransferases for benzoic acids BioPath 10 0.000 1 0.005










gibberellic acid biosynthesis TAIR-GO 9 0.000 1 0.000










gibberellin biosynthesis AraCyc 9 0.000 1 0.001












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP705A20 (At3g20110)







max. difference between log2-ratios: 4.5











max. difference between log2-ratios excluding lowest and highest 5%: 1.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Cell Wall Carbohydrate Metabolism BioPath 18.5 0.000 4 0.032
C-compound and carbohydrate metabolism FunCat 15 0.000 3 0.040
Fructose and mannose metabolism KEGG 12 0.000 2 0.001
trehalose biosynthesis TAIR-GO 9 0.000 1 0.000
trehalose biosynthesis I AraCyc 9 0.000 1 0.009
trehalose biosynthesis II AraCyc 9 0.000 1 0.005










trehalose biosynthesis III AraCyc 9 0.000 1 0.002










energy FunCat 9 0.000 1 0.000










metabolism of energy reserves (e.g. glycogen, trehalose) FunCat 9 0.000 1 0.000










cellulose biosynthesis BioPath 8 0.000 1 0.026










hemicellulose biosynthesis BioPath 8 0.000 1 0.003










Glycan Biosynthesis and Metabolism KEGG 8 0.000 1 0.030










Glycerolipid metabolism KEGG 8 0.000 1 0.009










mono-/sesqui-/di-terpene biosynthesis LitPath 8 0.000 2 0.001










terpenoid metabolism LitPath 8 0.000 2 0.001










pectin metabolism BioPath 6.5 0.001 2 0.048












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP705A20 (At3g20110)







max. difference between log2-ratios: 4.8











max. difference between log2-ratios excluding lowest and highest 5%: 2.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Ribosome KEGG 46 0.000 9 0.006





protein synthesis FunCat 26 0.000 5 0.006




Nucleotide Metabolism KEGG 24 0.000 3 0.032




Purine metabolism KEGG 24 0.000 3 0.015




Intermediary Carbon Metabolism BioPath 22 0.000 4 0.012




colanic acid building blocks biosynthesis AraCyc 22 0.000 5 0.001




Fructose and mannose metabolism KEGG 20.5 0.000 5 0.000




acetate fermentation AraCyc 19 0.000 3 0.056




fructose degradation (anaerobic) AraCyc 19 0.000 3 0.044




glycolysis IV AraCyc 19 0.000 3 0.046




sorbitol fermentation AraCyc 19 0.000 3 0.051




Gluconeogenesis from lipids in seeds BioPath 18 0.000 3 0.003




GDP-D-rhamnose biosynthesis AraCyc 18 0.000 3 0.000




de novo biosynthesis of purine nucleotides I AraCyc 16 0.004 2 0.282










de novo biosynthesis of purine nucleotides II AraCyc 16 0.000 2 0.037










formaldehyde assimilation I (serine pathway) AraCyc 16 0.000 2 0.032










gluconeogenesis AraCyc 16 0.000 2 0.070










serine-isocitrate lyase pathway AraCyc 16 0.000 2 0.070










amino acid metabolism FunCat 16 0.017 2 0.160










Alanine and aspartate metabolism KEGG 16 0.000 2 0.013










nucleotide metabolism FunCat 15 0.000 2 0.000










purine nucleotide metabolism FunCat 15 0.000 2 0.003










mannitol degradation AraCyc 13 0.000 2 0.015










sorbitol degradation AraCyc 13 0.000 2 0.017










GDP-carbohydrate biosynthesis BioPath 12 0.000 2 0.000










tRNA charging pathway AraCyc 12 0.000 3 0.017










tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) FunCat 12 0.037 2 0.154










Aminoacyl-tRNA biosynthesis KEGG 12 0.000 3 0.004










Pyruvate metabolism KEGG 12 0.031 2 0.106










transport FunCat 11 0.000 2 0.000










Oxidative phosphorylation KEGG 11 0.004 2 0.109





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP705A20 (At3g20110)







max. difference between log2-ratios: 4.8











max. difference between log2-ratios excluding lowest and highest 5%: 2.3











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Intermediary Carbon Metabolism BioPath 10 0.000 1 0.031



glyoxylate cycle AraCyc 10 0.000 1 0.002


TCA cycle variation VII AraCyc 10 0.000 1 0.015










TCA cycle variation VIII AraCyc 10 0.000 1 0.008










glycolysis and gluconeogenesis FunCat 10 0.000 1 0.001










glyoxylate cycle FunCat 10 0.000 1 0.000










Glyoxylate and dicarboxylate metabolism KEGG 10 0.000 1 0.000










Pyruvate metabolism KEGG 10 0.000 1 0.000










fatty acid beta oxidation complex BioPath 7 0.000 1 0.001










Gluconeogenesis from lipids in seeds BioPath 7 0.000 1 0.006










fatty acid beta-oxidation TAIR-GO 7 0.000 1 0.000










fatty acid oxidation pathway AraCyc 7 0.000 1 0.001










isoleucine degradation I AraCyc 7 0.000 1 0.002










isoleucine degradation III AraCyc 7 0.000 1 0.000










leucine degradation I AraCyc 7 0.000 1 0.002










leucine degradation II AraCyc 7 0.000 1 0.000










valine degradation I AraCyc 7 0.000 1 0.004










valine degradation II AraCyc 7 0.000 1 0.001










Degradation of storage lipids and straight fatty acids AcylLipid 7 0.000 1 0.000



























page created by Juergen Ehlting 06/06/06