Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)


CYP705A24 (At1g28430) save all data as Tab Delimited Table








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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.



Pathway Source Sum of scores Sum of genes




Cell Wall Carbohydrate Metabolism BioPath 125 28




ubiquinone biosynthesis BioPath 32 4






















To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
































For more information on how these pathway maps were generated please read the methods page














































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP705A24 (At1g28430)





max. difference between log2-ratios: 7.5









max. difference between log2-ratios excluding lowest and highest 5%: 4.2









Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap




Miscellaneous acyl lipid metabolism AcylLipid 44 0.000 16 0.000
Fatty acid elongation and wax and cutin metabolism AcylLipid 29 0.000 6 0.026
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 22 0.000 4 0.000
fatty acid metabolism TAIR-GO 22 0.000 3 0.000
Cell Wall Carbohydrate Metabolism BioPath 20 0.001 5 0.131
sexual reproduction TAIR-GO 20 0.000 5 0.000
Biosynthesis of prenyl diphosphates BioPath 14 0.000 3 0.001
triacylglycerol degradation AraCyc 14 0.000 6 0.000
C-compound and carbohydrate metabolism FunCat 14 0.027 3 0.302
polyisoprenoid biosynthesis AraCyc 12 0.000 3 0.000
Galactose metabolism KEGG 12 0.000 2 0.001
Starch and sucrose metabolism KEGG 12 0.000 3 0.001
gibberellic acid catabolism TAIR-GO 10 0.000 1 0.001
Diterpenoid biosynthesis KEGG 10 0.000 1 0.002








Gibberellin metabolism LitPath 10 0.000 1 0.024








giberelin catabolism LitPath 10 0.000 1 0.000








prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 10 0.000 1 0.019








lignin biosynthesis AraCyc 9 0.000 4 0.000








Phenylpropanoid pathway LitPath 9 0.011 4 0.003








pectin metabolism BioPath 8 0.003 2 0.206








ubiquinone biosynthesis BioPath 8 0.000 1 0.001








biosynthesis of proto- and siroheme AraCyc 8 0.000 1 0.042








mevalonate pathway AraCyc 8 0.000 1 0.010








metabolism of vitamins, cofactors, and prosthetic groups FunCat 8 0.000 1 0.001








Oxidative phosphorylation KEGG 8 0.000 2 0.009








Ubiquinone biosynthesis KEGG 8 0.000 1 0.002








ubiquinone biosynthesis LitPath 8 0.000 1 0.001








suberin biosynthesis AraCyc 7 0.000 3 0.000






































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP705A24 (At1g28430)





max. difference between log2-ratios: 0.0









max. difference between log2-ratios excluding lowest and highest 5%: 0.0





















not expressed to detectable levels in any sample





















































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP705A24 (At1g28430)





max. difference between log2-ratios: 1.0









max. difference between log2-ratios excluding lowest and highest 5%: 0.0









Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap




Cell Wall Carbohydrate Metabolism BioPath 18 0.000 3 0.011



RNA polymerase KEGG 15 0.000 2 0.000


Transcription KEGG 15 0.000 2 0.002


Fructose and mannose metabolism KEGG 14 0.000 2 0.001


cellulose biosynthesis BioPath 10 0.000 1 0.007








hemicellulose biosynthesis BioPath 10 0.000 1 0.001








Glycan Biosynthesis and Metabolism KEGG 10 0.000 1 0.021








Glycerolipid metabolism KEGG 10 0.000 1 0.006








DNA methylation TAIR-GO 9 0.000 1 0.000








nuclear heterochromatin TAIR-GO 9 0.000 1 0.000








RNA interference, production of siRNA TAIR-GO 9 0.000 1 0.000





















































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP705A24 (At1g28430)





max. difference between log2-ratios: 8.4









max. difference between log2-ratios excluding lowest and highest 5%: 1.4









Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap




Cell Wall Carbohydrate Metabolism BioPath 87 0.000 20 0.000

pectin metabolism BioPath 69 0.000 17 0.000
Miscellaneous acyl lipid metabolism AcylLipid 54 0.000 17 0.000
Starch and sucrose metabolism KEGG 39 0.000 6 0.000
C-compound and carbohydrate metabolism FunCat 36 0.001 11 0.013
Phenylpropanoid pathway LitPath 29 0.000 6 0.000
biogenesis of cell wall FunCat 24 0.000 8 0.000
core phenylpropanoid metabolism BioPath 22 0.000 3 0.020
Galactose metabolism KEGG 22 0.000 3 0.001
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 20 0.000 3 0.058
sexual reproduction TAIR-GO 20 0.000 5 0.000
Glycan Biosynthesis and Metabolism KEGG 18 0.000 3 0.008
sucrose metabolism BioPath 16 0.000 2 0.009








glycolysis and gluconeogenesis FunCat 16 0.031 4 0.121








Fatty acid elongation and wax and cutin metabolism AcylLipid 16 0.033 4 0.278








Glutamate/glutamine from nitrogen fixation BioPath 14 0.000 2 0.003








fatty acid metabolism TAIR-GO 14 0.000 3 0.000








long-chain fatty acid metabolism TAIR-GO 14 0.000 3 0.000








very-long-chain fatty acid metabolism TAIR-GO 14 0.000 3 0.000








lactose degradation IV AraCyc 14 0.000 4 0.000








assimilation of ammonia, metabolism of the glutamate group FunCat 14 0.000 2 0.011








nitrogen and sulfur metabolism FunCat 14 0.000 2 0.009








Glutamate metabolism KEGG 14 0.000 2 0.017








Nitrogen metabolism KEGG 14 0.000 2 0.008








Oxidative phosphorylation KEGG 14 0.000 3 0.014








Biosynthesis of prenyl diphosphates BioPath 12 0.010 2 0.082








triacylglycerol degradation AraCyc 12 0.000 5 0.000








C-compound and carbohydrate utilization FunCat 12 0.000 2 0.000























page created by Juergen Ehlting 06/05/06