Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP705A24 (At1g28430)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
Cell Wall Carbohydrate Metabolism	BioPath	125	28
ubiquinone biosynthesis	BioPath	32	4
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP705A24 (At1g28430)
max. difference between log2-ratios:				7.5
max. difference between log2-ratios excluding lowest and highest 5%:				4.2
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Miscellaneous acyl lipid metabolism	AcylLipid	44	0.000	16	0.000
Fatty acid elongation and wax and cutin metabolism	AcylLipid	29	0.000	6	0.026
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	22	0.000	4	0.000
fatty acid metabolism	TAIR-GO	22	0.000	3	0.000
Cell Wall Carbohydrate Metabolism	BioPath	20	0.001	5	0.131
sexual reproduction	TAIR-GO	20	0.000	5	0.000
Biosynthesis of prenyl diphosphates	BioPath	14	0.000	3	0.001
triacylglycerol degradation	AraCyc	14	0.000	6	0.000
C-compound and carbohydrate metabolism	FunCat	14	0.027	3	0.302
polyisoprenoid biosynthesis	AraCyc	12	0.000	3	0.000
Galactose metabolism	KEGG	12	0.000	2	0.001
Starch and sucrose metabolism	KEGG	12	0.000	3	0.001
gibberellic acid catabolism	TAIR-GO	10	0.000	1	0.001
Diterpenoid biosynthesis	KEGG	10	0.000	1	0.002
Gibberellin metabolism	LitPath	10	0.000	1	0.024
giberelin catabolism	LitPath	10	0.000	1	0.000
prenyl diphosphate (GPP,FPP, GGPP) biosynthesis	LitPath	10	0.000	1	0.019
lignin biosynthesis	AraCyc	9	0.000	4	0.000
Phenylpropanoid pathway	LitPath	9	0.011	4	0.003
pectin metabolism	BioPath	8	0.003	2	0.206
ubiquinone biosynthesis	BioPath	8	0.000	1	0.001
biosynthesis of proto- and siroheme	AraCyc	8	0.000	1	0.042
mevalonate pathway	AraCyc	8	0.000	1	0.010
metabolism of vitamins, cofactors, and prosthetic groups	FunCat	8	0.000	1	0.001
Oxidative phosphorylation	KEGG	8	0.000	2	0.009
Ubiquinone biosynthesis	KEGG	8	0.000	1	0.002
ubiquinone biosynthesis	LitPath	8	0.000	1	0.001
suberin biosynthesis	AraCyc	7	0.000	3	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP705A24 (At1g28430)
max. difference between log2-ratios:				0.0
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
not expressed to detectable levels in any sample
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP705A24 (At1g28430)
max. difference between log2-ratios:				1.0
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Cell Wall Carbohydrate Metabolism	BioPath	18	0.000	3	0.011
RNA polymerase	KEGG	15	0.000	2	0.000
Transcription	KEGG	15	0.000	2	0.002
Fructose and mannose metabolism	KEGG	14	0.000	2	0.001
cellulose biosynthesis	BioPath	10	0.000	1	0.007
hemicellulose biosynthesis	BioPath	10	0.000	1	0.001
Glycan Biosynthesis and Metabolism	KEGG	10	0.000	1	0.021
Glycerolipid metabolism	KEGG	10	0.000	1	0.006
DNA methylation	TAIR-GO	9	0.000	1	0.000
nuclear heterochromatin	TAIR-GO	9	0.000	1	0.000
RNA interference, production of siRNA	TAIR-GO	9	0.000	1	0.000
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP705A24 (At1g28430)
max. difference between log2-ratios:				8.4
max. difference between log2-ratios excluding lowest and highest 5%:				1.4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Cell Wall Carbohydrate Metabolism	BioPath	87	0.000	20	0.000
pectin metabolism	BioPath	69	0.000	17	0.000
Miscellaneous acyl lipid metabolism	AcylLipid	54	0.000	17	0.000
Starch and sucrose metabolism	KEGG	39	0.000	6	0.000
C-compound and carbohydrate metabolism	FunCat	36	0.001	11	0.013
Phenylpropanoid pathway	LitPath	29	0.000	6	0.000
biogenesis of cell wall	FunCat	24	0.000	8	0.000
core phenylpropanoid metabolism	BioPath	22	0.000	3	0.020
Galactose metabolism	KEGG	22	0.000	3	0.001
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	20	0.000	3	0.058
sexual reproduction	TAIR-GO	20	0.000	5	0.000
Glycan Biosynthesis and Metabolism	KEGG	18	0.000	3	0.008
sucrose metabolism	BioPath	16	0.000	2	0.009
glycolysis and gluconeogenesis	FunCat	16	0.031	4	0.121
Fatty acid elongation and wax and cutin metabolism	AcylLipid	16	0.033	4	0.278
Glutamate/glutamine from nitrogen fixation	BioPath	14	0.000	2	0.003
fatty acid metabolism	TAIR-GO	14	0.000	3	0.000
long-chain fatty acid metabolism	TAIR-GO	14	0.000	3	0.000
very-long-chain fatty acid metabolism	TAIR-GO	14	0.000	3	0.000
lactose degradation IV	AraCyc	14	0.000	4	0.000
assimilation of ammonia, metabolism of the glutamate group	FunCat	14	0.000	2	0.011
nitrogen and sulfur metabolism	FunCat	14	0.000	2	0.009
Glutamate metabolism	KEGG	14	0.000	2	0.017
Nitrogen metabolism	KEGG	14	0.000	2	0.008
Oxidative phosphorylation	KEGG	14	0.000	3	0.014
Biosynthesis of prenyl diphosphates	BioPath	12	0.010	2	0.082
triacylglycerol degradation	AraCyc	12	0.000	5	0.000
C-compound and carbohydrate utilization	FunCat	12	0.000	2	0.000
page created by Juergen Ehlting	06/05/06